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The map label for this gene is traH [H]

Identifier: 87200184

GI number: 87200184

Start: 2305885

End: 2307321

Strand: Direct

Name: traH [H]

Synonym: Saro_2168

Alternate gene names: 87200184

Gene position: 2305885-2307321 (Clockwise)

Preceding gene: 87200183

Following gene: 87200185

Centisome position: 64.74

GC content: 62.7

Gene sequence:

>1437_bases
ATGAAAAGAGCCATCGCTGCGCTTCTGGCAGCCGCCCTCCCCTTCGCCCTCCCGCTGTCTGGCGCATCGGCCGACGTCGG
CAGTTCGATGGACTCGTTTCTGAACGACGTCGGGGGCGCTGCCAACGTCAACGGACCGACCGCGTTCCAGGGGCAGTCGG
CCGGCTATTACAGCCTCGGCAATGTCTGGACGCGGTTCCCGCAGAAGACGACCAACATCGCCAATCTGCAGTTGCCGCGC
GCTCGCGCCGGTTGCGGCGGCATCGACATCTTTGCGGGGTCCTTCAGCTTCATCAACGCGAGCGAGATCGTCGCGATGCT
GAAGGCAGTCGCGAACAATGCTGTCGGCTTTGCCTTCAGCCTAGCGATCGACACGGTCTGCCCGGAATGCTCGAAGATCA
TGCAGGAGTTCAGCCAGAAGGCTCAGCTCATGAACAACCTCAACATCAACTCCTGCGAGATGGCCCAGGGTCTGGTGGGC
GGGATCTGGCCCAAGGGCGACCTTGCCGACAAGGCGATCTGCGAAGCGATCGGCAACTCCGAAGGGATTTTCACCGACTA
TGCCGCGGCCAAGCATGGGTGCGGCACCAAGGGGCAGCGATCGAGCACGACCGCGCAAGGCTCAGGCAAATATGATGACG
TCAATCCCGGGGTGCCGCGCAACTACACCTGGACGATCCTCAAGAAGTCGGCGTTCTTCTCGCCAGGCGGCCGGTTCGAC
GAAGAGCTCGCCGAATATGCGATGACGCTGCTCGGCACGATAATATACGTGCCCCCAAAGGACGATGAGCTGGGCAAGTT
CGTGCCAATCGTCGGCGAAGCCTCGTCCACCCTCGTGACTTCGCTGCTGGATGGCACGGCGAATGGCAATGTCCTCATTT
TCGACTGCGACGAGCCGGAAAAGTGCCTCAACCCGGGCTTCAAGTCGCTGAGCCTGCCGGCATCGAAAGCGCTGCGGCCG
CGCGTGGCTGCGCTCATCGGCGGTATGGTTCAGGCCATCCGCGACGACACCGCGATCAGCGAAGAGCAAAAGGAACTGCT
GCAAGTCGCGTCTATCCCGCTCTACAAGATCCTGACCGTCCAGGCGGCCTATGGCCGGGGCATGCCGACCGACGACCGGG
AGACCCTGGCCGAGATCGCCAGTGTCGACCTGCTGTTTGCTGTGCTCGACCGGATAGTGAGCGAGGCGGGCCGCTCGATG
TCGAGCTTCATCGGGGCCGACGAAGCCAAGATCGCCATGTGGCAGAATCAGGTCAATGTCGTGCGTCAGGCGCTCGCTGA
CCGGCAGGCCAACACGCATCTCAAGGTCAATGCGGTGCTGCAGATCATCGAGAAGACGGCGTTCATCGAGAACGTGCTGG
CCGCCTCGATGTCGCCCGGAATGGCCGCATCGCTGGACTGGTCGCGCGGCGTCCAGAGCCGCGCCCTTACCCACTGA

Upstream 100 bases:

>100_bases
GGCCGCCCCATTCCGATCGGCTACGGCGTCATGAGCGCCGACGAGCTTCAGGACCGGATTTACCTCCTCACATCGAAGGA
AGCTGGACGTGACTACTAGG

Downstream 100 bases:

>100_bases
CCGGGCCAACCACATCAAGGCGGGACAACAGACATGGTCGAGATTTTCACGGTCGGCGGCGGGGACTATCTGGTCAACGT
CTTCCAGGCGGTCGCCGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MKRAIAALLAAALPFALPLSGASADVGSSMDSFLNDVGGAANVNGPTAFQGQSAGYYSLGNVWTRFPQKTTNIANLQLPR
ARAGCGGIDIFAGSFSFINASEIVAMLKAVANNAVGFAFSLAIDTVCPECSKIMQEFSQKAQLMNNLNINSCEMAQGLVG
GIWPKGDLADKAICEAIGNSEGIFTDYAAAKHGCGTKGQRSSTTAQGSGKYDDVNPGVPRNYTWTILKKSAFFSPGGRFD
EELAEYAMTLLGTIIYVPPKDDELGKFVPIVGEASSTLVTSLLDGTANGNVLIFDCDEPEKCLNPGFKSLSLPASKALRP
RVAALIGGMVQAIRDDTAISEEQKELLQVASIPLYKILTVQAAYGRGMPTDDRETLAEIASVDLLFAVLDRIVSEAGRSM
SSFIGADEAKIAMWQNQVNVVRQALADRQANTHLKVNAVLQIIEKTAFIENVLAASMSPGMAASLDWSRGVQSRALTH

Sequences:

>Translated_478_residues
MKRAIAALLAAALPFALPLSGASADVGSSMDSFLNDVGGAANVNGPTAFQGQSAGYYSLGNVWTRFPQKTTNIANLQLPR
ARAGCGGIDIFAGSFSFINASEIVAMLKAVANNAVGFAFSLAIDTVCPECSKIMQEFSQKAQLMNNLNINSCEMAQGLVG
GIWPKGDLADKAICEAIGNSEGIFTDYAAAKHGCGTKGQRSSTTAQGSGKYDDVNPGVPRNYTWTILKKSAFFSPGGRFD
EELAEYAMTLLGTIIYVPPKDDELGKFVPIVGEASSTLVTSLLDGTANGNVLIFDCDEPEKCLNPGFKSLSLPASKALRP
RVAALIGGMVQAIRDDTAISEEQKELLQVASIPLYKILTVQAAYGRGMPTDDRETLAEIASVDLLFAVLDRIVSEAGRSM
SSFIGADEAKIAMWQNQVNVVRQALADRQANTHLKVNAVLQIIEKTAFIENVLAASMSPGMAASLDWSRGVQSRALTH
>Mature_478_residues
MKRAIAALLAAALPFALPLSGASADVGSSMDSFLNDVGGAANVNGPTAFQGQSAGYYSLGNVWTRFPQKTTNIANLQLPR
ARAGCGGIDIFAGSFSFINASEIVAMLKAVANNAVGFAFSLAIDTVCPECSKIMQEFSQKAQLMNNLNINSCEMAQGLVG
GIWPKGDLADKAICEAIGNSEGIFTDYAAAKHGCGTKGQRSSTTAQGSGKYDDVNPGVPRNYTWTILKKSAFFSPGGRFD
EELAEYAMTLLGTIIYVPPKDDELGKFVPIVGEASSTLVTSLLDGTANGNVLIFDCDEPEKCLNPGFKSLSLPASKALRP
RVAALIGGMVQAIRDDTAISEEQKELLQVASIPLYKILTVQAAYGRGMPTDDRETLAEIASVDLLFAVLDRIVSEAGRSM
SSFIGADEAKIAMWQNQVNVVRQALADRQANTHLKVNAVLQIIEKTAFIENVLAASMSPGMAASLDWSRGVQSRALTH

Specific function: Involved in pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010927 [H]

Pfam domain/function: PF06122 TraH [H]

EC number: NA

Molecular weight: Translated: 50653; Mature: 50653

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAIAALLAAALPFALPLSGASADVGSSMDSFLNDVGGAANVNGPTAFQGQSAGYYSLG
CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH
NVWTRFPQKTTNIANLQLPRARAGCGGIDIFAGSFSFINASEIVAMLKAVANNAVGFAFS
HHHHHCCCHHCCCCCEECCCHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHH
LAIDTVCPECSKIMQEFSQKAQLMNNLNINSCEMAQGLVGGIWPKGDLADKAICEAIGNS
HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
EGIFTDYAAAKHGCGTKGQRSSTTAQGSGKYDDVNPGVPRNYTWTILKKSAFFSPGGRFD
CCCEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH
EELAEYAMTLLGTIIYVPPKDDELGKFVPIVGEASSTLVTSLLDGTANGNVLIFDCDEPE
HHHHHHHHHHHHHEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCH
KCLNPGFKSLSLPASKALRPRVAALIGGMVQAIRDDTAISEEQKELLQVASIPLYKILTV
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHEE
QAAYGRGMPTDDRETLAEIASVDLLFAVLDRIVSEAGRSMSSFIGADEAKIAMWQNQVNV
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHH
VRQALADRQANTHLKVNAVLQIIEKTAFIENVLAASMSPGMAASLDWSRGVQSRALTH
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHCHHHHCCCC
>Mature Secondary Structure
MKRAIAALLAAALPFALPLSGASADVGSSMDSFLNDVGGAANVNGPTAFQGQSAGYYSLG
CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH
NVWTRFPQKTTNIANLQLPRARAGCGGIDIFAGSFSFINASEIVAMLKAVANNAVGFAFS
HHHHHCCCHHCCCCCEECCCHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHH
LAIDTVCPECSKIMQEFSQKAQLMNNLNINSCEMAQGLVGGIWPKGDLADKAICEAIGNS
HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
EGIFTDYAAAKHGCGTKGQRSSTTAQGSGKYDDVNPGVPRNYTWTILKKSAFFSPGGRFD
CCCEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH
EELAEYAMTLLGTIIYVPPKDDELGKFVPIVGEASSTLVTSLLDGTANGNVLIFDCDEPE
HHHHHHHHHHHHHEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCH
KCLNPGFKSLSLPASKALRPRVAALIGGMVQAIRDDTAISEEQKELLQVASIPLYKILTV
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHEE
QAAYGRGMPTDDRETLAEIASVDLLFAVLDRIVSEAGRSMSSFIGADEAKIAMWQNQVNV
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHH
VRQALADRQANTHLKVNAVLQIIEKTAFIENVLAASMSPGMAASLDWSRGVQSRALTH
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1348105; 7915817; 2656408 [H]