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The map label for this gene is traB [H]

Identifier: 87200175

GI number: 87200175

Start: 2297182

End: 2298522

Strand: Direct

Name: traB [H]

Synonym: Saro_2159

Alternate gene names: 87200175

Gene position: 2297182-2298522 (Clockwise)

Preceding gene: 87200174

Following gene: 87200176

Centisome position: 64.5

GC content: 65.7

Gene sequence:

>1341_bases
ATGACTGATGCAACCCATACGCCAGGCACTGCCCCTTTGCAGGCCGAGAGCGCAGCATCGTCCGAACTTTCCGGGCTCAA
CGCCCGCACCGCGCGCCGTCAGAAGCTGCTGCTGGGGTCGCTGGGAGCACTCGCCCTCATCGGCGGAAGCTGGTTCATCC
TTGGCGGCGACGACAAGGCCAAGACCGGCGATCCCAATGCGGCGCAGACGATCGACACGGCAGGCCTGGTCAACCGCGAC
CTATCCCAGCGCGAGTTCGTCGCGACTTATGGCAACCGGCTGGATGCGGTCACGCGCGAACAGAAGGCGCTGAAAGACGG
CAGCATTCCGCGAAGCGAGATCGAAGCGCAGCTGGCGGCTCTCAAAGCCGAGAACCAGGCCATGCGTGTCGACGGACAGG
CTGCGATCGATGCTATCTCGGCAGAGAACGCCGAGCTCAAGACCCGGCTTGCCGCGCAGCCTGCATCACCGGCACCGGCT
GTACCGCCACCGGCTTATGGGCCGCAGGCAGGCGGCTATGACGCAAGGGCCCGGTCACCCCAAACCAGTACCGGCGCCGC
AGCAGGCGATCCGCAGGGCGGCATGATCCCTTCGCCTGGCGAGGTGAAGCTGATGAGCTTCAGCTCCGACAAGGCAGCGA
CCAATGGCCTCCGTGTGGGCAGGCCCGATGCGCCACCGGTCGTGGTCGAAGATTCGCCTGATTACCTGCCGCCCAACTCC
TACGCGCCGGCACGCGTAATCGTCGGCGTCGATGCCTCGGCAGGCGTCGCCAGCCAGACCGATCCGCTGCCTGTGGTGCT
TCGGATTACCGGCCCTGCTCGTTCGGTCATGCAGAACGGAAAGGTTTTGACCACCCGGATCCAGGGCTGCGTTGTCAACG
GCGCGGCACGCGGGGATCTCAGCAGTGAGAAGGTCTACGTGAAGCTCGCCCGCATGACCTGCGATCAGCCTGGCGGCAGG
GTCGCAGTGAGCGAGGTCAAAGGCTTCATCAGCTTCGCTGGCAAGTCCGGGGTCCGCGGCCGCGTCGTCAGCCGCGAAGG
TAGCCTCGTCAGCCAGGCCCTGCTGGCCGGGATCGTCGGCGGCTTCGGGCGCGGCTTCTCGGCCAATGCCAACAGTGTCT
TTTCCGGCGTCACGACCAACCCTGACGGCAGTCGCTCCAAGCTCTCGGCCGGCGACATTCTCGGTGGCGGGCTTGGCCAG
GGTGCCGCCGACGCTGCCGACACGGTCAGCAAATACCTGATCGAGCGCGCCGAACAGTACCAACCCGTCGTCGAGATGCC
GACCGGCATCGATGTCGAGATCGTGTTCCTCGACGGCGTCTACGTGAGGAACTCCCAATGA

Upstream 100 bases:

>100_bases
GCACCGCGCGACACGCTCGCCGTCTCGATCGCCGAGCCAAAGCTCGAACCCGGGGCCAGCACCACGGCCTTTGTTGTCGG
CGCAAGCGGGGAGACCGGCA

Downstream 100 bases:

>100_bases
TCGAAAATACTCTCCTCGAGCAGGACAATCGTCGGCGCCGCTGGTTGCGTACCAGCGCCGGACTGGCGGCGATCATCGCC
ATGTCGGCCGCGACGGGATG

Product: TraB pilus assembly

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MTDATHTPGTAPLQAESAASSELSGLNARTARRQKLLLGSLGALALIGGSWFILGGDDKAKTGDPNAAQTIDTAGLVNRD
LSQREFVATYGNRLDAVTREQKALKDGSIPRSEIEAQLAALKAENQAMRVDGQAAIDAISAENAELKTRLAAQPASPAPA
VPPPAYGPQAGGYDARARSPQTSTGAAAGDPQGGMIPSPGEVKLMSFSSDKAATNGLRVGRPDAPPVVVEDSPDYLPPNS
YAPARVIVGVDASAGVASQTDPLPVVLRITGPARSVMQNGKVLTTRIQGCVVNGAARGDLSSEKVYVKLARMTCDQPGGR
VAVSEVKGFISFAGKSGVRGRVVSREGSLVSQALLAGIVGGFGRGFSANANSVFSGVTTNPDGSRSKLSAGDILGGGLGQ
GAADAADTVSKYLIERAEQYQPVVEMPTGIDVEIVFLDGVYVRNSQ

Sequences:

>Translated_446_residues
MTDATHTPGTAPLQAESAASSELSGLNARTARRQKLLLGSLGALALIGGSWFILGGDDKAKTGDPNAAQTIDTAGLVNRD
LSQREFVATYGNRLDAVTREQKALKDGSIPRSEIEAQLAALKAENQAMRVDGQAAIDAISAENAELKTRLAAQPASPAPA
VPPPAYGPQAGGYDARARSPQTSTGAAAGDPQGGMIPSPGEVKLMSFSSDKAATNGLRVGRPDAPPVVVEDSPDYLPPNS
YAPARVIVGVDASAGVASQTDPLPVVLRITGPARSVMQNGKVLTTRIQGCVVNGAARGDLSSEKVYVKLARMTCDQPGGR
VAVSEVKGFISFAGKSGVRGRVVSREGSLVSQALLAGIVGGFGRGFSANANSVFSGVTTNPDGSRSKLSAGDILGGGLGQ
GAADAADTVSKYLIERAEQYQPVVEMPTGIDVEIVFLDGVYVRNSQ
>Mature_445_residues
TDATHTPGTAPLQAESAASSELSGLNARTARRQKLLLGSLGALALIGGSWFILGGDDKAKTGDPNAAQTIDTAGLVNRDL
SQREFVATYGNRLDAVTREQKALKDGSIPRSEIEAQLAALKAENQAMRVDGQAAIDAISAENAELKTRLAAQPASPAPAV
PPPAYGPQAGGYDARARSPQTSTGAAAGDPQGGMIPSPGEVKLMSFSSDKAATNGLRVGRPDAPPVVVEDSPDYLPPNSY
APARVIVGVDASAGVASQTDPLPVVLRITGPARSVMQNGKVLTTRIQGCVVNGAARGDLSSEKVYVKLARMTCDQPGGRV
AVSEVKGFISFAGKSGVRGRVVSREGSLVSQALLAGIVGGFGRGFSANANSVFSGVTTNPDGSRSKLSAGDILGGGLGQG
AADAADTVSKYLIERAEQYQPVVEMPTGIDVEIVFLDGVYVRNSQ

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 45750; Mature: 45619

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDATHTPGTAPLQAESAASSELSGLNARTARRQKLLLGSLGALALIGGSWFILGGDDKA
CCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCC
KTGDPNAAQTIDTAGLVNRDLSQREFVATYGNRLDAVTREQKALKDGSIPRSEIEAQLAA
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LKAENQAMRVDGQAAIDAISAENAELKTRLAAQPASPAPAVPPPAYGPQAGGYDARARSP
HHCCCCEEEECCHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QTSTGAAAGDPQGGMIPSPGEVKLMSFSSDKAATNGLRVGRPDAPPVVVEDSPDYLPPNS
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHCCEECCCCCCCCEEECCCCCCCCCCC
YAPARVIVGVDASAGVASQTDPLPVVLRITGPARSVMQNGKVLTTRIQGCVVNGAARGDL
CCCEEEEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHCCCEEEEEECEEEEECCCCCCC
SSEKVYVKLARMTCDQPGGRVAVSEVKGFISFAGKSGVRGRVVSREGSLVSQALLAGIVG
CCCEEEEEEEEHHCCCCCCEEEHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHH
GFGRGFSANANSVFSGVTTNPDGSRSKLSAGDILGGGLGQGAADAADTVSKYLIERAEQY
HCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
QPVVEMPTGIDVEIVFLDGVYVRNSQ
CCCEECCCCCCEEEEEECCEEEECCC
>Mature Secondary Structure 
TDATHTPGTAPLQAESAASSELSGLNARTARRQKLLLGSLGALALIGGSWFILGGDDKA
CCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCC
KTGDPNAAQTIDTAGLVNRDLSQREFVATYGNRLDAVTREQKALKDGSIPRSEIEAQLAA
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LKAENQAMRVDGQAAIDAISAENAELKTRLAAQPASPAPAVPPPAYGPQAGGYDARARSP
HHCCCCEEEECCHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QTSTGAAAGDPQGGMIPSPGEVKLMSFSSDKAATNGLRVGRPDAPPVVVEDSPDYLPPNS
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHCCEECCCCCCCCEEECCCCCCCCCCC
YAPARVIVGVDASAGVASQTDPLPVVLRITGPARSVMQNGKVLTTRIQGCVVNGAARGDL
CCCEEEEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHCCCEEEEEECEEEEECCCCCCC
SSEKVYVKLARMTCDQPGGRVAVSEVKGFISFAGKSGVRGRVVSREGSLVSQALLAGIVG
CCCEEEEEEEEHHCCCCCCEEEHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHH
GFGRGFSANANSVFSGVTTNPDGSRSKLSAGDILGGGLGQGAADAADTVSKYLIERAEQY
HCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
QPVVEMPTGIDVEIVFLDGVYVRNSQ
CCCEECCCCCCEEEEEECCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7915817; 8655498 [H]