| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is ybaP [C]
Identifier: 87200129
GI number: 87200129
Start: 2252270
End: 2253178
Strand: Direct
Name: ybaP [C]
Synonym: Saro_2113
Alternate gene names: 87200129
Gene position: 2252270-2253178 (Clockwise)
Preceding gene: 87200125
Following gene: 87200130
Centisome position: 63.24
GC content: 66.67
Gene sequence:
>909_bases ATGAAGCAAAGCATCCGCAACCTCCTCGCAGCATTCGCCCTGGCCGCAATCCCGCTGGCAGCTCCGGCCTGGGCCGAAAC TCCGGCCGCAACCACCGCCGTCGCCGAAAGGCACCTGAAGCCCGCGCTCTGGAAAGTGGCCGATGCCGATACGACGATCT ACCTGTTCGGCACGATCCACGCCTTGCCCAAGGGGCTGGTGTGGCTCGACGGGCCGGTTGCCTCGGCCCTTGCTGAATCG GGCGAACTGGTGACCGAGATTCCCGATGCGCCAGCAGCCCAGCAACAGCAGACGGTCCGTGCCATCGGCCTGCTCCAGGG AGAGACCTTGCGCTCGCTGATGAGCGACGCCGACCGCGCGGCCTATGAAGCGCTCCTGGCAAGGCTGCGGATTCCGGCCG AGGCGTTCGATCCGCTGGAGCCGTGGCTGGCGGGAATCACGCTGGGCGTCATGCCCTATGCCATGGCCGGCTACGGGGCG GACGATGGCGTGGAGGCCGTGCTGCGCAAGGCCGCGCTGGCGAAGGGCAAGAAGCAGGGCGCGCTTGAAACCGTGGAATT CCAGCTCGGCCTGTTCGACAAGCTGCCGCGCGAGGCGCAGCTCAAGTTCCTGGGCGAAGCCGTGCGCGATTTCGACAAGG GCACGGCAATCATCGGCACGATGACCGAAGACTGGGGCAAGGGTGATTCCGATGCTCTGGCCCGGCTACTCAACGACGAG ATGGACGATCCCGACCTCGCCGAAGCGCTGCTTTACAAGCGCAACCGCAACTGGGCGGCGTGGATACGCAAGCGGCTGGA CCAGCCGGGCGCGGTCTTCGTCGCCGTCGGCGCTGGCCATCTTGCAGGCGCGGGCAGCGTTCAGGACGTGCTGAAGGCAC AAGGCATCGCCACCTCGCGGGTACAGTGA
Upstream 100 bases:
>100_bases TCAACCGCCAAGCAGGGCCCGCGCCCCTTGCGAAGGCAAAGAGACGGGCGCCTTCATTCCTTCATTTCCCTGCAACCCCT TTGCAGGCAATAGAACGACG
Downstream 100 bases:
>100_bases AGCAGTTTCGCCGCCTTCTATGGGCCATCGTGCCGGCCCTGCTGCTGGGCATGGCCTTTGCGTGGATGGAGCGCAGGGAC ACGCCGGCGCAGGACGGGCG
Product: GumN
Products: NA
Alternate protein names: GumN Protein; GumN-Family Protein; SLA2 Protein
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MKQSIRNLLAAFALAAIPLAAPAWAETPAATTAVAERHLKPALWKVADADTTIYLFGTIHALPKGLVWLDGPVASALAES GELVTEIPDAPAAQQQQTVRAIGLLQGETLRSLMSDADRAAYEALLARLRIPAEAFDPLEPWLAGITLGVMPYAMAGYGA DDGVEAVLRKAALAKGKKQGALETVEFQLGLFDKLPREAQLKFLGEAVRDFDKGTAIIGTMTEDWGKGDSDALARLLNDE MDDPDLAEALLYKRNRNWAAWIRKRLDQPGAVFVAVGAGHLAGAGSVQDVLKAQGIATSRVQ
Sequences:
>Translated_302_residues MKQSIRNLLAAFALAAIPLAAPAWAETPAATTAVAERHLKPALWKVADADTTIYLFGTIHALPKGLVWLDGPVASALAES GELVTEIPDAPAAQQQQTVRAIGLLQGETLRSLMSDADRAAYEALLARLRIPAEAFDPLEPWLAGITLGVMPYAMAGYGA DDGVEAVLRKAALAKGKKQGALETVEFQLGLFDKLPREAQLKFLGEAVRDFDKGTAIIGTMTEDWGKGDSDALARLLNDE MDDPDLAEALLYKRNRNWAAWIRKRLDQPGAVFVAVGAGHLAGAGSVQDVLKAQGIATSRVQ >Mature_302_residues MKQSIRNLLAAFALAAIPLAAPAWAETPAATTAVAERHLKPALWKVADADTTIYLFGTIHALPKGLVWLDGPVASALAES GELVTEIPDAPAAQQQQTVRAIGLLQGETLRSLMSDADRAAYEALLARLRIPAEAFDPLEPWLAGITLGVMPYAMAGYGA DDGVEAVLRKAALAKGKKQGALETVEFQLGLFDKLPREAQLKFLGEAVRDFDKGTAIIGTMTEDWGKGDSDALARLLNDE MDDPDLAEALLYKRNRNWAAWIRKRLDQPGAVFVAVGAGHLAGAGSVQDVLKAQGIATSRVQ
Specific function: Unknown
COG id: COG3735
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32202; Mature: 32202
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQSIRNLLAAFALAAIPLAAPAWAETPAATTAVAERHLKPALWKVADADTTIYLFGTIH CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHH ALPKGLVWLDGPVASALAESGELVTEIPDAPAAQQQQTVRAIGLLQGETLRSLMSDADRA HHCCCCEEECCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH AYEALLARLRIPAEAFDPLEPWLAGITLGVMPYAMAGYGADDGVEAVLRKAALAKGKKQG HHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC ALETVEFQLGLFDKLPREAQLKFLGEAVRDFDKGTAIIGTMTEDWGKGDSDALARLLNDE CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCC MDDPDLAEALLYKRNRNWAAWIRKRLDQPGAVFVAVGAGHLAGAGSVQDVLKAQGIATSR CCCHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHC VQ CC >Mature Secondary Structure MKQSIRNLLAAFALAAIPLAAPAWAETPAATTAVAERHLKPALWKVADADTTIYLFGTIH CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHH ALPKGLVWLDGPVASALAESGELVTEIPDAPAAQQQQTVRAIGLLQGETLRSLMSDADRA HHCCCCEEECCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH AYEALLARLRIPAEAFDPLEPWLAGITLGVMPYAMAGYGADDGVEAVLRKAALAKGKKQG HHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC ALETVEFQLGLFDKLPREAQLKFLGEAVRDFDKGTAIIGTMTEDWGKGDSDALARLLNDE CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCC MDDPDLAEALLYKRNRNWAAWIRKRLDQPGAVFVAVGAGHLAGAGSVQDVLKAQGIATSR CCCHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHC VQ CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA