| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200125
Identifier: 87200125
GI number: 87200125
Start: 2245284
End: 2246075
Strand: Direct
Name: 87200125
Synonym: Saro_2109
Alternate gene names: NA
Gene position: 2245284-2246075 (Clockwise)
Preceding gene: 87200120
Following gene: 87200129
Centisome position: 63.04
GC content: 70.08
Gene sequence:
>792_bases ATGGCCACGTCACCCCCCACTATTTTCGCGCCGAAACGGCGTAATGCCGTCCGCCAGCGCATGGCCGCGCTCCAGGGCCG CCCCGACGCCGCACGCTACATCGCCGACGACATGGCCGACGATGTGCTCGACCGCCTGTCCTTCCTCCGCCACGAACCGC GCGAGGCGCTGGTCGTCGGAGACTGGACCGGCACGGTTCCCGGCGGGCTGCGCGCCACTGGGGCACAGGTCGAAGAGCGC GATCCCGCTCTCGGTACCGCCCTGCTCGACGAGGAAGCCCCCTACCCCGGCGACGACAAGTTCGATTTCATCGCCAGCCT CGGCACGCTCGACACCGTGAACGACCTTCCGGGCGCGCTGGTCCATCTCCGGCGCGCGCTGGCGGATGGCGGGCTGATGA TCGCGAGCTTCCCGGGAGCCGGTTCGCTGCCCGCGCTGCGCGCCATCATGTTCGAAGCCGATGGCGAGCGCCCCTCTCCG CGCATCCACCCGCAAGTCGATGTCCGGGCTGGCGGCCAGTTGCTGCAACGCTGCGGCTTTGCCGACCCGGTGATCGACAG CCACCACATCGATGTGCGCTTCGGTTCGTTCGAGCGCATGATCGGCGACTTGCGCGAACAGGGGCTGACGAGCTGCCTCG CACGGCCCGGTGCCCCCCTCGGCCGGACAGCCCTCGCCCGCGCGCAGTCAGCCTTCGACGCGCGCCGGGACGCTGACGGC AAGGTGACCGAACGCTTCGAGATCCTGACCCTCAGCGGGTGGGCGAAACCGCTCCGCCCGCCGAAGTTCTGA
Upstream 100 bases:
>100_bases GGTCGAGCGCGGACAGCCAGGACATGCCCAGGGACATGGCATCGTTGTCGACAGCGCCTTGAGGCTTGGCAAGAGCGCCC CGGACAGGCAGGGCCCGGAA
Downstream 100 bases:
>100_bases GCCGCCCGAAGGCGGCTCCTGATCAGGCGAGTGCCGCTTGCGCCGCCGAAAGCCGGGCGATCGGCACGCGATAGGGGCTG GCCGAGACGTAATCGAGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: SAM-Dependent Methyltransferase; Methyltransferase; SAM-Dependent Methyltransferase Protein; Biotin Biosynthesis Protein BioC; Methyltransferase Domain Family; S-Adenosyl-L-Methionine-Dependent Methyltransferases; Biotin Synthesis Protein; Biotin Synthesis Protein Bioc; Methyltransferase Family Protein; Biotin Synthesis Protein BioC
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MATSPPTIFAPKRRNAVRQRMAALQGRPDAARYIADDMADDVLDRLSFLRHEPREALVVGDWTGTVPGGLRATGAQVEER DPALGTALLDEEAPYPGDDKFDFIASLGTLDTVNDLPGALVHLRRALADGGLMIASFPGAGSLPALRAIMFEADGERPSP RIHPQVDVRAGGQLLQRCGFADPVIDSHHIDVRFGSFERMIGDLREQGLTSCLARPGAPLGRTALARAQSAFDARRDADG KVTERFEILTLSGWAKPLRPPKF
Sequences:
>Translated_263_residues MATSPPTIFAPKRRNAVRQRMAALQGRPDAARYIADDMADDVLDRLSFLRHEPREALVVGDWTGTVPGGLRATGAQVEER DPALGTALLDEEAPYPGDDKFDFIASLGTLDTVNDLPGALVHLRRALADGGLMIASFPGAGSLPALRAIMFEADGERPSP RIHPQVDVRAGGQLLQRCGFADPVIDSHHIDVRFGSFERMIGDLREQGLTSCLARPGAPLGRTALARAQSAFDARRDADG KVTERFEILTLSGWAKPLRPPKF >Mature_262_residues ATSPPTIFAPKRRNAVRQRMAALQGRPDAARYIADDMADDVLDRLSFLRHEPREALVVGDWTGTVPGGLRATGAQVEERD PALGTALLDEEAPYPGDDKFDFIASLGTLDTVNDLPGALVHLRRALADGGLMIASFPGAGSLPALRAIMFEADGERPSPR IHPQVDVRAGGQLLQRCGFADPVIDSHHIDVRFGSFERMIGDLREQGLTSCLARPGAPLGRTALARAQSAFDARRDADGK VTERFEILTLSGWAKPLRPPKF
Specific function: Unknown
COG id: COG0500
COG function: function code QR; SAM-dependent methyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI40018642, Length=273, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI86792933, Length=155, Percent_Identity=32.258064516129, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI19922210, Length=264, Percent_Identity=27.6515151515151, Blast_Score=73, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28455; Mature: 28323
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATSPPTIFAPKRRNAVRQRMAALQGRPDAARYIADDMADDVLDRLSFLRHEPREALVVG CCCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE DWTGTVPGGLRATGAQVEERDPALGTALLDEEAPYPGDDKFDFIASLGTLDTVNDLPGAL CCCCCCCCCCCCCCCCCHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHCCHHH VHLRRALADGGLMIASFPGAGSLPALRAIMFEADGERPSPRIHPQVDVRAGGQLLQRCGF HHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHCCC ADPVIDSHHIDVRFGSFERMIGDLREQGLTSCLARPGAPLGRTALARAQSAFDARRDADG CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC KVTERFEILTLSGWAKPLRPPKF CHHHEEEEEEECCCCCCCCCCCC >Mature Secondary Structure ATSPPTIFAPKRRNAVRQRMAALQGRPDAARYIADDMADDVLDRLSFLRHEPREALVVG CCCCCCEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE DWTGTVPGGLRATGAQVEERDPALGTALLDEEAPYPGDDKFDFIASLGTLDTVNDLPGAL CCCCCCCCCCCCCCCCCHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHCCHHH VHLRRALADGGLMIASFPGAGSLPALRAIMFEADGERPSPRIHPQVDVRAGGQLLQRCGF HHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHCCC ADPVIDSHHIDVRFGSFERMIGDLREQGLTSCLARPGAPLGRTALARAQSAFDARRDADG CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC KVTERFEILTLSGWAKPLRPPKF CHHHEEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA