| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87200105
Identifier: 87200105
GI number: 87200105
Start: 2225765
End: 2226544
Strand: Reverse
Name: 87200105
Synonym: Saro_2089
Alternate gene names: NA
Gene position: 2226544-2225765 (Counterclockwise)
Preceding gene: 87200107
Following gene: 87200104
Centisome position: 62.52
GC content: 66.67
Gene sequence:
>780_bases ATGATCCCGTTCCGCAGCGTCCCGGCGAAGCAAGGCTATCAGGCATCGCCGCGCGAGCGAGCGGGCTCGTTCGTCTTCGC TGCGGTTGCGAGCGCGCTGGTTTTCCTGATCATGCTGAAGATGGGGGCAGTCACCGGCTTCGGCGGGGGCGAAAGCGCGA GGCTGACGGCGATCGACCTTTCTGCCGAGGGCAAGGACGAGAAGAAGGCGGACCAGCCCGAGCAGAAGCAGCAGAAGCAA TCGGACCGCACCGAGGCCGTCGCGGCGCCCACGGTGACTGCGCCGCCGCCGGTGCCGGTTCCGGGCAAGGTCCAATGGCC CGAAGGCTTCATCGAGCTTTCGAGGAATGACTATCGCGCAACCGACATCAGCCAGATGAGGCGGCAGGATTCCGGCGGCG GGCAGCAGGCGAGCGCAGGCAGCCCAGGCGATTCCGCCAGCGTCGGGCAGGGGCCGGGCGGTGTCAGGCTATATGCCGCG CAATGGTATCGCGAGCCTTCCGACGCCGAGATCGGGCCTTACCTGCCTCAGCGCCGGATGCAGGGCGACTGGGCCATGAT CGCCTGCCGCACGGTGGAGAAGTACCATGTCGAGGATTGCCAGGAATTGGGCGAAAGCCCGCCGGGATCGGGCCTGGCGC GTGCGATCCGGCAGGCCGCGTGGCAGTTCCTGGTCCGGCCACCACGCGTGAACGGGAAGCCGCAGATCGGCGAATGGGTG CGGATACGTTTCGATTTCAGGTCGAAGAAGGGCGAGGCAGAGGTCAGCGCCAATCTTTGA
Upstream 100 bases:
>100_bases ACGCTGACGCCCGTGTCAGGATCGCTGCCGCTCGTAACAAAATGTCGCGCGGGTCCTTGGCGATTGCTGCGCTTGCGTGG TGCGTGTAATCGCAGCGTCG
Downstream 100 bases:
>100_bases CAATAAGTGTGCAAATTTGTATTTTGGGCACATGGCCCAGATGAATATTTCCGTCCCCGACCGACTGAAGGAGTGGATCG AAAGCCGCGTGGCTGACGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MIPFRSVPAKQGYQASPRERAGSFVFAAVASALVFLIMLKMGAVTGFGGGESARLTAIDLSAEGKDEKKADQPEQKQQKQ SDRTEAVAAPTVTAPPPVPVPGKVQWPEGFIELSRNDYRATDISQMRRQDSGGGQQASAGSPGDSASVGQGPGGVRLYAA QWYREPSDAEIGPYLPQRRMQGDWAMIACRTVEKYHVEDCQELGESPPGSGLARAIRQAAWQFLVRPPRVNGKPQIGEWV RIRFDFRSKKGEAEVSANL
Sequences:
>Translated_259_residues MIPFRSVPAKQGYQASPRERAGSFVFAAVASALVFLIMLKMGAVTGFGGGESARLTAIDLSAEGKDEKKADQPEQKQQKQ SDRTEAVAAPTVTAPPPVPVPGKVQWPEGFIELSRNDYRATDISQMRRQDSGGGQQASAGSPGDSASVGQGPGGVRLYAA QWYREPSDAEIGPYLPQRRMQGDWAMIACRTVEKYHVEDCQELGESPPGSGLARAIRQAAWQFLVRPPRVNGKPQIGEWV RIRFDFRSKKGEAEVSANL >Mature_259_residues MIPFRSVPAKQGYQASPRERAGSFVFAAVASALVFLIMLKMGAVTGFGGGESARLTAIDLSAEGKDEKKADQPEQKQQKQ SDRTEAVAAPTVTAPPPVPVPGKVQWPEGFIELSRNDYRATDISQMRRQDSGGGQQASAGSPGDSASVGQGPGGVRLYAA QWYREPSDAEIGPYLPQRRMQGDWAMIACRTVEKYHVEDCQELGESPPGSGLARAIRQAAWQFLVRPPRVNGKPQIGEWV RIRFDFRSKKGEAEVSANL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28102; Mature: 28102
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPFRSVPAKQGYQASPRERAGSFVFAAVASALVFLIMLKMGAVTGFGGGESARLTAIDL CCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE SAEGKDEKKADQPEQKQQKQSDRTEAVAAPTVTAPPPVPVPGKVQWPEGFIELSRNDYRA CCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHCCCCCCH TDISQMRRQDSGGGQQASAGSPGDSASVGQGPGGVRLYAAQWYREPSDAEIGPYLPQRRM HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCHHHC QGDWAMIACRTVEKYHVEDCQELGESPPGSGLARAIRQAAWQFLVRPPRVNGKPQIGEWV CCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE RIRFDFRSKKGEAEVSANL EEEEEECCCCCCCEECCCC >Mature Secondary Structure MIPFRSVPAKQGYQASPRERAGSFVFAAVASALVFLIMLKMGAVTGFGGGESARLTAIDL CCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE SAEGKDEKKADQPEQKQQKQSDRTEAVAAPTVTAPPPVPVPGKVQWPEGFIELSRNDYRA CCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHCCCCCCH TDISQMRRQDSGGGQQASAGSPGDSASVGQGPGGVRLYAAQWYREPSDAEIGPYLPQRRM HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCHHHC QGDWAMIACRTVEKYHVEDCQELGESPPGSGLARAIRQAAWQFLVRPPRVNGKPQIGEWV CCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE RIRFDFRSKKGEAEVSANL EEEEEECCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA