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The map label for this gene is secD

Identifier: 87200089

GI number: 87200089

Start: 2212771

End: 2214378

Strand: Reverse

Name: secD

Synonym: Saro_2073

Alternate gene names: 87200089

Gene position: 2214378-2212771 (Counterclockwise)

Preceding gene: 87200090

Following gene: 87200088

Centisome position: 62.17

GC content: 65.61

Gene sequence:

>1608_bases
ATGCTCGAATTTCCGCGCTGGAAGGTGATCTGGCTCTGGCTGCTGACGCTGGTCTGCGTTGCTGCCGCGATCCCCTCGCT
CACCTCCACGATGGGCCTCGCCTGGCCATCCTCGCTTCCCGAACCGAAGGTCAACCTCGGCCTCGACCTTGCTGGCGGTA
GCCACATCCTGCTCGAGGCGGACCCCTCGCAGGTTCGCCAGCAGCGTATCGAGGGCATGGAGGAATCGGTTCGCACCAAG
CTGAAGCAGGATGACAAGAACATCCGCATCAGCGACATCTCCAACCGTGACGGCGCGCTGACTTTCGTGGTAGCCGATCC
GTCGCAGGTCGATGCGGTGCGCGAGGCGATCCTGCCGCTGACCAACGGTGCGGGGCTGACCGGACAGCGCGACTGGGACA
TCAACGTCGTTGACGGCAACCGCTTCGTGCTCAAGCCTACCGACGCCGGGATCGACCAGGCGGTGACCCAGGCGATGGAC
ACGGCGGTCGAAGTGGTGCGCAAGCGCATCGACGCGCTCGGCACCAAGGAGCCGACGATCATCCGCTCGGGGCCGACGCG
CATCGTCGTCCAGGTTCCTGGCCTGCAAGACCCGCAGGCGCTCAAGAACCTGCTCGGCCAGACCGCCAAGCTCGAGTTCA
AGCTGGTCGATACCTCGGCGCTGCCATCCGACGTGGCGCAGGGCATCGCGCCTCCGGGCAGCGAGATCGTGCCATACGTG
TCGCCCGCCGAAGGCGGCGGGGTGCCCTCGATCGCGGTCAAGCGGCTCGGCGGCATTCGCGGCGACCAGCTGACCAACGC
CCAGCAGACCAACAACCAGCAGACCAACGAACCGGTCGTCAACATCACCTTCAATACCGAGGGCGGCGCCAAGTTCGCCA
AGCTGACCACGCAGAACGTGGGCAAGCAGTTCGCGATCATCCTCGACGGCAAGGTGCTTTCGGCGCCGGTCATCAACGAG
CCGATCCTGGGCGGCAGCGCGGTGATCTCCGGCCGCTTCACGACCGAAAGCGCGAACCAGCTTGCGATCTCGCTGCGTTC
GGGCGCGTTGCCGGTGGACCTGAAGGTGGTCGAGGAGCGAACCGTCGGTCCGGACCTTGGTGCCGATTCGATCCGCAAGG
GCGTGATCGCGATGGGCGTCGGCACCCTGGCGCTCGCGGTGTTCATCCTCGCGACCTATGGCCGCTTCGGCGTCTATGCG
AACCTCGCGGTCATCATCAACGTTCTGATGATCCTTGGCATCATGGGCATAATCGGCACGACGCTGACCCTGCCGGGCAT
CGCCGGCTTCGTGCTGACCATCGGTGCGGCGGTCGACGCCAACGTCCTGATCAACGAACGCATCCGCGAGGAGCGGCATC
GCGGACGCAAGGTCGTGCAGGCGGTGGAACTGGGCTACAAGGAAGCCAGCCGCGCGATCTTCGACGCGAACATCACCAAC
GTCATCGCCGCCGTGCTCATGTTCGCGTTCGGATCGGGCCCGGTGAAGGGCTTCGCCGTCGTGCTGATGATCGGCATCGC
CACCTCGGTGTTCACCGCCGTGACGCTGACGCGCATGTGGGTGGCCGGATGGCTGCGCCGCGCGCGGCCCACTGAAATCG
CCTTGTAA

Upstream 100 bases:

>100_bases
CAAGGTCAAGGCCGTGCGCGCCACCATCGGCGACATCGTGCCGCCCGCGGGCAGCGCACCGGCCAACGATTGATCTTCCT
TTCCTGAAAGCTGACCGCCC

Downstream 100 bases:

>100_bases
GAGGAGGAAGGCACATGAAACTCCTCAAGCTCGTTCCCGACCATACCAACATCCACTTCCTGAAGTGGCGGGTGCCGTTC
TACGTCATCAGCATCATCCT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MLEFPRWKVIWLWLLTLVCVAAAIPSLTSTMGLAWPSSLPEPKVNLGLDLAGGSHILLEADPSQVRQQRIEGMEESVRTK
LKQDDKNIRISDISNRDGALTFVVADPSQVDAVREAILPLTNGAGLTGQRDWDINVVDGNRFVLKPTDAGIDQAVTQAMD
TAVEVVRKRIDALGTKEPTIIRSGPTRIVVQVPGLQDPQALKNLLGQTAKLEFKLVDTSALPSDVAQGIAPPGSEIVPYV
SPAEGGGVPSIAVKRLGGIRGDQLTNAQQTNNQQTNEPVVNITFNTEGGAKFAKLTTQNVGKQFAIILDGKVLSAPVINE
PILGGSAVISGRFTTESANQLAISLRSGALPVDLKVVEERTVGPDLGADSIRKGVIAMGVGTLALAVFILATYGRFGVYA
NLAVIINVLMILGIMGIIGTTLTLPGIAGFVLTIGAAVDANVLINERIREERHRGRKVVQAVELGYKEASRAIFDANITN
VIAAVLMFAFGSGPVKGFAVVLMIGIATSVFTAVTLTRMWVAGWLRRARPTEIAL

Sequences:

>Translated_535_residues
MLEFPRWKVIWLWLLTLVCVAAAIPSLTSTMGLAWPSSLPEPKVNLGLDLAGGSHILLEADPSQVRQQRIEGMEESVRTK
LKQDDKNIRISDISNRDGALTFVVADPSQVDAVREAILPLTNGAGLTGQRDWDINVVDGNRFVLKPTDAGIDQAVTQAMD
TAVEVVRKRIDALGTKEPTIIRSGPTRIVVQVPGLQDPQALKNLLGQTAKLEFKLVDTSALPSDVAQGIAPPGSEIVPYV
SPAEGGGVPSIAVKRLGGIRGDQLTNAQQTNNQQTNEPVVNITFNTEGGAKFAKLTTQNVGKQFAIILDGKVLSAPVINE
PILGGSAVISGRFTTESANQLAISLRSGALPVDLKVVEERTVGPDLGADSIRKGVIAMGVGTLALAVFILATYGRFGVYA
NLAVIINVLMILGIMGIIGTTLTLPGIAGFVLTIGAAVDANVLINERIREERHRGRKVVQAVELGYKEASRAIFDANITN
VIAAVLMFAFGSGPVKGFAVVLMIGIATSVFTAVTLTRMWVAGWLRRARPTEIAL
>Mature_535_residues
MLEFPRWKVIWLWLLTLVCVAAAIPSLTSTMGLAWPSSLPEPKVNLGLDLAGGSHILLEADPSQVRQQRIEGMEESVRTK
LKQDDKNIRISDISNRDGALTFVVADPSQVDAVREAILPLTNGAGLTGQRDWDINVVDGNRFVLKPTDAGIDQAVTQAMD
TAVEVVRKRIDALGTKEPTIIRSGPTRIVVQVPGLQDPQALKNLLGQTAKLEFKLVDTSALPSDVAQGIAPPGSEIVPYV
SPAEGGGVPSIAVKRLGGIRGDQLTNAQQTNNQQTNEPVVNITFNTEGGAKFAKLTTQNVGKQFAIILDGKVLSAPVINE
PILGGSAVISGRFTTESANQLAISLRSGALPVDLKVVEERTVGPDLGADSIRKGVIAMGVGTLALAVFILATYGRFGVYA
NLAVIINVLMILGIMGIIGTTLTLPGIAGFVLTIGAAVDANVLINERIREERHRGRKVVQAVELGYKEASRAIFDANITN
VIAAVLMFAFGSGPVKGFAVVLMIGIATSVFTAVTLTRMWVAGWLRRARPTEIAL

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=507, Percent_Identity=36.8836291913215, Blast_Score=283, Evalue=2e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 56860; Mature: 56860

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEFPRWKVIWLWLLTLVCVAAAIPSLTSTMGLAWPSSLPEPKVNLGLDLAGGSHILLEA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEC
DPSQVRQQRIEGMEESVRTKLKQDDKNIRISDISNRDGALTFVVADPSQVDAVREAILPL
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCHHHHHHHHHHHCC
TNGAGLTGQRDWDINVVDGNRFVLKPTDAGIDQAVTQAMDTAVEVVRKRIDALGTKEPTI
CCCCCCCCCCCCEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IRSGPTRIVVQVPGLQDPQALKNLLGQTAKLEFKLVDTSALPSDVAQGIAPPGSEIVPYV
EECCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEEECCCCCCHHHHHCCCCCCCCCCCCC
SPAEGGGVPSIAVKRLGGIRGDQLTNAQQTNNQQTNEPVVNITFNTEGGAKFAKLTTQNV
CCCCCCCCCHHHHHHHCCCCCCCCCCCHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHC
GKQFAIILDGKVLSAPVINEPILGGSAVISGRFTTESANQLAISLRSGALPVDLKVVEER
CCEEEEEECCCEEECCCCCCCCCCCCEEEECEEECCCCCEEEEEEECCCCCEEEEEECCC
TVGPDLGADSIRKGVIAMGVGTLALAVFILATYGRFGVYANLAVIINVLMILGIMGIIGT
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTLPGIAGFVLTIGAAVDANVLINERIREERHRGRKVVQAVELGYKEASRAIFDANITN
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHH
VIAAVLMFAFGSGPVKGFAVVLMIGIATSVFTAVTLTRMWVAGWLRRARPTEIAL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLEFPRWKVIWLWLLTLVCVAAAIPSLTSTMGLAWPSSLPEPKVNLGLDLAGGSHILLEA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEC
DPSQVRQQRIEGMEESVRTKLKQDDKNIRISDISNRDGALTFVVADPSQVDAVREAILPL
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCHHHHHHHHHHHCC
TNGAGLTGQRDWDINVVDGNRFVLKPTDAGIDQAVTQAMDTAVEVVRKRIDALGTKEPTI
CCCCCCCCCCCCEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IRSGPTRIVVQVPGLQDPQALKNLLGQTAKLEFKLVDTSALPSDVAQGIAPPGSEIVPYV
EECCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEEECCCCCCHHHHHCCCCCCCCCCCCC
SPAEGGGVPSIAVKRLGGIRGDQLTNAQQTNNQQTNEPVVNITFNTEGGAKFAKLTTQNV
CCCCCCCCCHHHHHHHCCCCCCCCCCCHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHC
GKQFAIILDGKVLSAPVINEPILGGSAVISGRFTTESANQLAISLRSGALPVDLKVVEER
CCEEEEEECCCEEECCCCCCCCCCCCEEEECEEECCCCCEEEEEEECCCCCEEEEEECCC
TVGPDLGADSIRKGVIAMGVGTLALAVFILATYGRFGVYANLAVIINVLMILGIMGIIGT
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTLPGIAGFVLTIGAAVDANVLINERIREERHRGRKVVQAVELGYKEASRAIFDANITN
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHH
VIAAVLMFAFGSGPVKGFAVVLMIGIATSVFTAVTLTRMWVAGWLRRARPTEIAL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA