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The map label for this gene is secF [H]

Identifier: 87200088

GI number: 87200088

Start: 2211779

End: 2212756

Strand: Reverse

Name: secF [H]

Synonym: Saro_2072

Alternate gene names: 87200088

Gene position: 2212756-2211779 (Counterclockwise)

Preceding gene: 87200089

Following gene: 87200085

Centisome position: 62.13

GC content: 62.99

Gene sequence:

>978_bases
ATGAAACTCCTCAAGCTCGTTCCCGACCATACCAACATCCACTTCCTGAAGTGGCGGGTGCCGTTCTACGTCATCAGCAT
CATCCTGATGGCGGCGTCCTGGGGCCTGGTCCTGACCAAGGGCCTGAACCTGGGCGTCGACTTCATCGGTGGCCAGATGA
TTCGCGTGACCTTCGAACGCAGCGCCGAAGCGCCCGTGGGCGAACTGCGCGAGCAGGTCGGCCGGCTGGGCTATGGCGAA
CCGATCATCCAGCGCTACGGCAAGCCCAACGAGATCTCGATCCGGATGAAGCTGCCCGAGGGCGCAGACCACGATGCGGC
GCTGGCCGACAAGATGGCCCGCACGATCACGGCCGACATCAAGAAGAACCATGGCGATGCGCGTATCGACGGCGTCGATT
CGGTGTCGGGCAAGGTCTCCAAGGAGCTAGGCTGGGATGCGTTCAAGGCGCTCGGCCTCGCCTCGCTGGCGGTGGCGGCT
TATATCTGGCTGCGTTTCGAATGGCAGTTCGGTGTCGGCGCGCTCTTCGCGCTGGTCCACGACGTCACGCTGACGCTCGG
GCTTTTCGCGCTGACCGGGATGGAGTTCGACCTGAACATCGTCGCCGCGTTGCTGACGCTGATCGGCTACTCGCTCAACG
ACACGATCGTGGTCTACGACCGCATCCGCGAGAACATGAAGAAGTTCCGCAAGATGCCGATGCCCGAACTGCTCGACCTT
TCGGTGAACGAGACGCTGGCGCGCACGATCGTGACCTCGCTGTCGATGCTGATCACGCTGGTGGCGCTGCTGCTGCTCGG
CCCGGACGTGATCTTCGGCTTCACCGCAGCCATCACGCTCGGCATCTTCGTCGGGACGTACAGCTCGATCTACATGGCCG
CGCCGATCCTGATCTGGCTCAAGGTCAATCCGAACAGCTTCGTGCCGACCGAGACCGCGCTTGAAAAGCAGGAGCGGATG
GCGCGGGAAGGCGCCTGA

Upstream 100 bases:

>100_bases
CCTCGGTGTTCACCGCCGTGACGCTGACGCGCATGTGGGTGGCCGGATGGCTGCGCCGCGCGCGGCCCACTGAAATCGCC
TTGTAAGAGGAGGAAGGCAC

Downstream 100 bases:

>100_bases
GCTATCCAGTCGGCTTGAAATCGGAAGGCGGCGGCGAGGCTTAAGGCTTCGTCGCCGCTTCTTCGTAGATCGCTGCAAGC
GCCGCGGCATTCGCGTCCCA

Product: protein translocase subunit secF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKLLKLVPDHTNIHFLKWRVPFYVISIILMAASWGLVLTKGLNLGVDFIGGQMIRVTFERSAEAPVGELREQVGRLGYGE
PIIQRYGKPNEISIRMKLPEGADHDAALADKMARTITADIKKNHGDARIDGVDSVSGKVSKELGWDAFKALGLASLAVAA
YIWLRFEWQFGVGALFALVHDVTLTLGLFALTGMEFDLNIVAALLTLIGYSLNDTIVVYDRIRENMKKFRKMPMPELLDL
SVNETLARTIVTSLSMLITLVALLLLGPDVIFGFTAAITLGIFVGTYSSIYMAAPILIWLKVNPNSFVPTETALEKQERM
AREGA

Sequences:

>Translated_325_residues
MKLLKLVPDHTNIHFLKWRVPFYVISIILMAASWGLVLTKGLNLGVDFIGGQMIRVTFERSAEAPVGELREQVGRLGYGE
PIIQRYGKPNEISIRMKLPEGADHDAALADKMARTITADIKKNHGDARIDGVDSVSGKVSKELGWDAFKALGLASLAVAA
YIWLRFEWQFGVGALFALVHDVTLTLGLFALTGMEFDLNIVAALLTLIGYSLNDTIVVYDRIRENMKKFRKMPMPELLDL
SVNETLARTIVTSLSMLITLVALLLLGPDVIFGFTAAITLGIFVGTYSSIYMAAPILIWLKVNPNSFVPTETALEKQERM
AREGA
>Mature_325_residues
MKLLKLVPDHTNIHFLKWRVPFYVISIILMAASWGLVLTKGLNLGVDFIGGQMIRVTFERSAEAPVGELREQVGRLGYGE
PIIQRYGKPNEISIRMKLPEGADHDAALADKMARTITADIKKNHGDARIDGVDSVSGKVSKELGWDAFKALGLASLAVAA
YIWLRFEWQFGVGALFALVHDVTLTLGLFALTGMEFDLNIVAALLTLIGYSLNDTIVVYDRIRENMKKFRKMPMPELLDL
SVNETLARTIVTSLSMLITLVALLLLGPDVIFGFTAAITLGIFVGTYSSIYMAAPILIWLKVNPNSFVPTETALEKQERM
AREGA

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=311, Percent_Identity=35.3697749196142, Blast_Score=196, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35884; Mature: 35884

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLKLVPDHTNIHFLKWRVPFYVISIILMAASWGLVLTKGLNLGVDFIGGQMIRVTFER
CCCCEECCCCCCEEEEEEEHHHHHHHHHHHHHCCHHHEECCCCCCCCHHCCEEEEEEECC
SAEAPVGELREQVGRLGYGEPIIQRYGKPNEISIRMKLPEGADHDAALADKMARTITADI
CCCCCHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
KKNHGDARIDGVDSVSGKVSKELGWDAFKALGLASLAVAAYIWLRFEWQFGVGALFALVH
HCCCCCCEECCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHH
DVTLTLGLFALTGMEFDLNIVAALLTLIGYSLNDTIVVYDRIRENMKKFRKMPMPELLDL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCHHHCC
SVNETLARTIVTSLSMLITLVALLLLGPDVIFGFTAAITLGIFVGTYSSIYMAAPILIWL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
KVNPNSFVPTETALEKQERMAREGA
EECCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLLKLVPDHTNIHFLKWRVPFYVISIILMAASWGLVLTKGLNLGVDFIGGQMIRVTFER
CCCCEECCCCCCEEEEEEEHHHHHHHHHHHHHCCHHHEECCCCCCCCHHCCEEEEEEECC
SAEAPVGELREQVGRLGYGEPIIQRYGKPNEISIRMKLPEGADHDAALADKMARTITADI
CCCCCHHHHHHHHHCCCCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
KKNHGDARIDGVDSVSGKVSKELGWDAFKALGLASLAVAAYIWLRFEWQFGVGALFALVH
HCCCCCCEECCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHH
DVTLTLGLFALTGMEFDLNIVAALLTLIGYSLNDTIVVYDRIRENMKKFRKMPMPELLDL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCHHHCC
SVNETLARTIVTSLSMLITLVALLLLGPDVIFGFTAAITLGIFVGTYSSIYMAAPILIWL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
KVNPNSFVPTETALEKQERMAREGA
EECCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9175857 [H]