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The map label for this gene is hfaC [H]

Identifier: 87200084

GI number: 87200084

Start: 2207602

End: 2209398

Strand: Direct

Name: hfaC [H]

Synonym: Saro_2068

Alternate gene names: 87200084

Gene position: 2207602-2209398 (Clockwise)

Preceding gene: 87200080

Following gene: 87200086

Centisome position: 61.98

GC content: 66.78

Gene sequence:

>1797_bases
ATGGCAGCAGCACCGATCCTCAGCTGGGAAGGCCTTGGACTTCTCCAGGGCAATGGCTGGCTTTTTCGCGACCTCGACAT
CCACATCGGCCCGCGCGACCGCCTGGCGCTGATCGGGCGGAACGGCGCGGGCAAGACCACGCTGCTCAAGCTGCTGGGCG
GACAGATCGATGCGGACAAGGGTACCCGCTCGATCCAGCCCGGCACCAGGATCGTGACGCTGGAGCAGGACCCCTTCTTC
ACCGGCTATGACACGCTGATGGACTTCGCGCTGTCGGGCAAGGACGCGCCGGCCCGACACGAGGTCGAATCGATTGCCGG
GCAGCTCGGCATCGACATGAGCCGCAAGGCGGACAGCGCCAGCGGTGGCGAGCGGCGTCGGGCGGCCCTCGCCCGCGCAC
TGGCAAGCGAGCCGGACCTGCTCCTGCTCGACGAGCCGACCAACCACCTCGACCTTGCCGCCATCGACTGGCTGGAGGAC
TGGCTCCAGCGGTTCAAGGGTGCGTTCGTGGTGATCAGCCACGACCGCACCTTCCTCGAACGCCTGACCAGGGCGACGCT
CTGGCTCGACCGTGGATCGTTGCGCCGCAAGGACATTGGCTTTGGCGGGTACGAGGCCTGGATGGAACAGGTCTATGCCG
AGGAAGCCCGCGCCGCCGACAAGCTCGACGCCAAGCTGAAGATCGAAGCCCACTGGCTGGAACGCGGCGTCACCGCGCGG
CGCAAGCGCAACATGGGCCGCCTCGAAAAGCTTTATGAAATGCGCGCGCAGCGGGCGGCGATGCTCTCGCCGCAGGGCAC
CGCAAAGCTCGCCATCGCCAGCGACGATGCCAAGAGCAAGGCGGTGATCGTCGCCGACCACGTCAACAAGTCCTTCGGCG
ATCGCCCGATCGTCAAGGACTTCACCCTGCGCATCACGCGCAAGGACCGCATCGGCGTCGTCGGATCGAATGGCGCGGGC
AAGACCACGCTGCTCAAGCTCCTGACCGGCGAACTCGCGCCCGACAGCGGCACCGTGACGCTGGCCAAGACCCTCCAGGG
CGTGATGATCGACCAGCAGCGCAGCCTGATGGCGCCGGAAAAGCGCGTGCGCGACGTGCTGGCCGATGGCAGCGACTGGA
TCGACGTGCGCGGGGTCCGCAAGCACATCCAGGGCTATCTCAAGGACTTCCTGTTCGATCCCGGCCTTGTCGAGGCGCGC
GTCGGCACGCTTTCGGGCGGCGAGCGGTCGCGCCTCCTGCTGGCACGCGAATTCGCGCGCAAGTCCAACCTGCTGGTGCT
GGACGAGCCGACCAACGACCTCGACCTGGAAACGCTGGATCTGCTCCAGGAAGTGATAGCGGACTATGACGGCACGGTGC
TGATCGTCAGCCACGACCGCGACTTCCTCGACCGCACGGTCACGATCACGCTGGGCATGGACGGTTCGGGCCGGGTCGAT
ATCGTCGCTGGCGGCTATGCCGACTGGGAAAAGATGCGCAAGAGCAGAGGCGCGGGCGCTGCAAAGGCGGCATCGCCCCG
GGAAGCCGGAGCCCCTCCACCGCCTCCACCGCCGCCGCCGGCGAAGAAGGGCAAGCTTTCCTACAAGGACCAGCGCGACT
ACGAACTTCTGCCGACGCGCATCGAGGAACTCGAGGCAGCAATCGCGCGTGGCGAAGCCCAGTTGGCCGACCCGGACCTC
TACGCCAGGGACCCGAAGAAGTTCGACGCGCTGATGGCGGCGCTGGAAAAGGTGCGGGGCGAGAAGGAAGCAGCCGAGGA
GCGCTGGCTGGAACTGGCCGAAATGGTCGAGGGCTGA

Upstream 100 bases:

>100_bases
ATTCAGGACCGATTTCGAAGGGTGGCACAGCTTATCCTGTCAGCTCATTCATTTGCCTGCGCCGTTGCGCAGCGGCTGGG
CCGAGGCTAAGCGCGGCGAC

Downstream 100 bases:

>100_bases
TCACCCGATCCGGTAAAAGTCCGCGACCCGGTCCAGCGCGATGCGCAGCACCAGCTTCCCGCTGCGCGCGGGCCAGTCGA
GCGCCTTTTCCGCGGCGGGC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: Protein HfaC [H]

Number of amino acids: Translated: 598; Mature: 597

Protein sequence:

>598_residues
MAAAPILSWEGLGLLQGNGWLFRDLDIHIGPRDRLALIGRNGAGKTTLLKLLGGQIDADKGTRSIQPGTRIVTLEQDPFF
TGYDTLMDFALSGKDAPARHEVESIAGQLGIDMSRKADSASGGERRRAALARALASEPDLLLLDEPTNHLDLAAIDWLED
WLQRFKGAFVVISHDRTFLERLTRATLWLDRGSLRRKDIGFGGYEAWMEQVYAEEARAADKLDAKLKIEAHWLERGVTAR
RKRNMGRLEKLYEMRAQRAAMLSPQGTAKLAIASDDAKSKAVIVADHVNKSFGDRPIVKDFTLRITRKDRIGVVGSNGAG
KTTLLKLLTGELAPDSGTVTLAKTLQGVMIDQQRSLMAPEKRVRDVLADGSDWIDVRGVRKHIQGYLKDFLFDPGLVEAR
VGTLSGGERSRLLLAREFARKSNLLVLDEPTNDLDLETLDLLQEVIADYDGTVLIVSHDRDFLDRTVTITLGMDGSGRVD
IVAGGYADWEKMRKSRGAGAAKAASPREAGAPPPPPPPPPAKKGKLSYKDQRDYELLPTRIEELEAAIARGEAQLADPDL
YARDPKKFDALMAALEKVRGEKEAAEERWLELAEMVEG

Sequences:

>Translated_598_residues
MAAAPILSWEGLGLLQGNGWLFRDLDIHIGPRDRLALIGRNGAGKTTLLKLLGGQIDADKGTRSIQPGTRIVTLEQDPFF
TGYDTLMDFALSGKDAPARHEVESIAGQLGIDMSRKADSASGGERRRAALARALASEPDLLLLDEPTNHLDLAAIDWLED
WLQRFKGAFVVISHDRTFLERLTRATLWLDRGSLRRKDIGFGGYEAWMEQVYAEEARAADKLDAKLKIEAHWLERGVTAR
RKRNMGRLEKLYEMRAQRAAMLSPQGTAKLAIASDDAKSKAVIVADHVNKSFGDRPIVKDFTLRITRKDRIGVVGSNGAG
KTTLLKLLTGELAPDSGTVTLAKTLQGVMIDQQRSLMAPEKRVRDVLADGSDWIDVRGVRKHIQGYLKDFLFDPGLVEAR
VGTLSGGERSRLLLAREFARKSNLLVLDEPTNDLDLETLDLLQEVIADYDGTVLIVSHDRDFLDRTVTITLGMDGSGRVD
IVAGGYADWEKMRKSRGAGAAKAASPREAGAPPPPPPPPPAKKGKLSYKDQRDYELLPTRIEELEAAIARGEAQLADPDL
YARDPKKFDALMAALEKVRGEKEAAEERWLELAEMVEG
>Mature_597_residues
AAAPILSWEGLGLLQGNGWLFRDLDIHIGPRDRLALIGRNGAGKTTLLKLLGGQIDADKGTRSIQPGTRIVTLEQDPFFT
GYDTLMDFALSGKDAPARHEVESIAGQLGIDMSRKADSASGGERRRAALARALASEPDLLLLDEPTNHLDLAAIDWLEDW
LQRFKGAFVVISHDRTFLERLTRATLWLDRGSLRRKDIGFGGYEAWMEQVYAEEARAADKLDAKLKIEAHWLERGVTARR
KRNMGRLEKLYEMRAQRAAMLSPQGTAKLAIASDDAKSKAVIVADHVNKSFGDRPIVKDFTLRITRKDRIGVVGSNGAGK
TTLLKLLTGELAPDSGTVTLAKTLQGVMIDQQRSLMAPEKRVRDVLADGSDWIDVRGVRKHIQGYLKDFLFDPGLVEARV
GTLSGGERSRLLLAREFARKSNLLVLDEPTNDLDLETLDLLQEVIADYDGTVLIVSHDRDFLDRTVTITLGMDGSGRVDI
VAGGYADWEKMRKSRGAGAAKAASPREAGAPPPPPPPPPAKKGKLSYKDQRDYELLPTRIEELEAAIARGEAQLADPDLY
ARDPKKFDALMAALEKVRGEKEAAEERWLELAEMVEG

Specific function: Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adhere to surfaces [H]

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=539, Percent_Identity=29.1280148423006, Blast_Score=157, Evalue=3e-38,
Organism=Homo sapiens, GI10947135, Length=543, Percent_Identity=27.6243093922652, Blast_Score=148, Evalue=2e-35,
Organism=Homo sapiens, GI69354671, Length=543, Percent_Identity=27.6243093922652, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI10947137, Length=494, Percent_Identity=29.3522267206478, Blast_Score=119, Evalue=8e-27,
Organism=Homo sapiens, GI27881506, Length=496, Percent_Identity=29.6370967741936, Blast_Score=119, Evalue=9e-27,
Organism=Escherichia coli, GI1787182, Length=638, Percent_Identity=36.6771159874608, Blast_Score=361, Evalue=1e-101,
Organism=Escherichia coli, GI2367384, Length=522, Percent_Identity=33.3333333333333, Blast_Score=267, Evalue=1e-72,
Organism=Escherichia coli, GI1789751, Length=619, Percent_Identity=28.4329563812601, Blast_Score=221, Evalue=9e-59,
Organism=Escherichia coli, GI1787041, Length=522, Percent_Identity=29.5019157088123, Blast_Score=201, Evalue=1e-52,
Organism=Escherichia coli, GI48994943, Length=577, Percent_Identity=24.263431542461, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1788165, Length=232, Percent_Identity=28.8793103448276, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786253, Length=226, Percent_Identity=30.0884955752212, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87081834, Length=194, Percent_Identity=31.4432989690722, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787758, Length=176, Percent_Identity=32.3863636363636, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1786563, Length=206, Percent_Identity=29.126213592233, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787712, Length=175, Percent_Identity=30.2857142857143, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787164, Length=192, Percent_Identity=30.7291666666667, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081791, Length=200, Percent_Identity=28, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1789891, Length=236, Percent_Identity=26.6949152542373, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI87081709, Length=190, Percent_Identity=26.8421052631579, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI1787029, Length=214, Percent_Identity=27.1028037383178, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI1787500, Length=202, Percent_Identity=23.7623762376238, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1788225, Length=206, Percent_Identity=25.7281553398058, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=528, Percent_Identity=28.219696969697, Blast_Score=163, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI17553372, Length=548, Percent_Identity=28.8321167883212, Blast_Score=139, Evalue=6e-33,
Organism=Caenorhabditis elegans, GI17555318, Length=517, Percent_Identity=26.3056092843327, Blast_Score=134, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17565586, Length=202, Percent_Identity=29.2079207920792, Blast_Score=70, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6320874, Length=358, Percent_Identity=29.3296089385475, Blast_Score=144, Evalue=5e-35,
Organism=Saccharomyces cerevisiae, GI6321121, Length=406, Percent_Identity=30.2955665024631, Blast_Score=140, Evalue=6e-34,
Organism=Saccharomyces cerevisiae, GI6324314, Length=327, Percent_Identity=28.7461773700306, Blast_Score=122, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6323278, Length=325, Percent_Identity=28.9230769230769, Blast_Score=113, Evalue=8e-26,
Organism=Saccharomyces cerevisiae, GI6325030, Length=341, Percent_Identity=29.3255131964809, Blast_Score=111, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24666836, Length=537, Percent_Identity=29.608938547486, Blast_Score=179, Evalue=4e-45,
Organism=Drosophila melanogaster, GI24641342, Length=542, Percent_Identity=27.4907749077491, Blast_Score=170, Evalue=2e-42,
Organism=Drosophila melanogaster, GI24642252, Length=502, Percent_Identity=29.8804780876494, Blast_Score=158, Evalue=1e-38,
Organism=Drosophila melanogaster, GI18859989, Length=502, Percent_Identity=29.8804780876494, Blast_Score=158, Evalue=1e-38,
Organism=Drosophila melanogaster, GI221512771, Length=193, Percent_Identity=30.0518134715026, Blast_Score=70, Evalue=5e-12,
Organism=Drosophila melanogaster, GI281363262, Length=205, Percent_Identity=27.8048780487805, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24653245, Length=205, Percent_Identity=27.8048780487805, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221500365, Length=177, Percent_Identity=32.7683615819209, Blast_Score=67, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007184, Length=177, Percent_Identity=32.7683615819209, Blast_Score=67, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR007406 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 65879; Mature: 65748

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAAPILSWEGLGLLQGNGWLFRDLDIHIGPRDRLALIGRNGAGKTTLLKLLGGQIDADK
CCCCCCCCCCCCEEEECCCEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHCCCCCCCC
GTRSIQPGTRIVTLEQDPFFTGYDTLMDFALSGKDAPARHEVESIAGQLGIDMSRKADSA
CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
SGGERRRAALARALASEPDLLLLDEPTNHLDLAAIDWLEDWLQRFKGAFVVISHDRTFLE
CCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHH
RLTRATLWLDRGSLRRKDIGFGGYEAWMEQVYAEEARAADKLDAKLKIEAHWLERGVTAR
HHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCCHHHH
RKRNMGRLEKLYEMRAQRAAMLSPQGTAKLAIASDDAKSKAVIVADHVNKSFGDRPIVKD
HHHCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCEE
FTLRITRKDRIGVVGSNGAGKTTLLKLLTGELAPDSGTVTLAKTLQGVMIDQQRSLMAPE
EEEEEEECCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHCCHHHHCCHH
KRVRDVLADGSDWIDVRGVRKHIQGYLKDFLFDPGLVEARVGTLSGGERSRLLLAREFAR
HHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCCCCHHHHHHHHHHHH
KSNLLVLDEPTNDLDLETLDLLQEVIADYDGTVLIVSHDRDFLDRTVTITLGMDGSGRVD
HCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEE
IVAGGYADWEKMRKSRGAGAAKAASPREAGAPPPPPPPPPAKKGKLSYKDQRDYELLPTR
EEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
IEELEAAIARGEAQLADPDLYARDPKKFDALMAALEKVRGEKEAAEERWLELAEMVEG
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AAAPILSWEGLGLLQGNGWLFRDLDIHIGPRDRLALIGRNGAGKTTLLKLLGGQIDADK
CCCCCCCCCCCEEEECCCEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHCCCCCCCC
GTRSIQPGTRIVTLEQDPFFTGYDTLMDFALSGKDAPARHEVESIAGQLGIDMSRKADSA
CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
SGGERRRAALARALASEPDLLLLDEPTNHLDLAAIDWLEDWLQRFKGAFVVISHDRTFLE
CCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHH
RLTRATLWLDRGSLRRKDIGFGGYEAWMEQVYAEEARAADKLDAKLKIEAHWLERGVTAR
HHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCCHHHH
RKRNMGRLEKLYEMRAQRAAMLSPQGTAKLAIASDDAKSKAVIVADHVNKSFGDRPIVKD
HHHCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCEE
FTLRITRKDRIGVVGSNGAGKTTLLKLLTGELAPDSGTVTLAKTLQGVMIDQQRSLMAPE
EEEEEEECCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHCCHHHHCCHH
KRVRDVLADGSDWIDVRGVRKHIQGYLKDFLFDPGLVEARVGTLSGGERSRLLLAREFAR
HHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCHHEEECCCCCCCHHHHHHHHHHHH
KSNLLVLDEPTNDLDLETLDLLQEVIADYDGTVLIVSHDRDFLDRTVTITLGMDGSGRVD
HCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEE
IVAGGYADWEKMRKSRGAGAAKAASPREAGAPPPPPPPPPAKKGKLSYKDQRDYELLPTR
EEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
IEELEAAIARGEAQLADPDLYARDPKKFDALMAALEKVRGEKEAAEERWLELAEMVEG
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Endonuclease; Excision [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11259647; 8150261 [H]