Click here to switch to the map view.

The map label for this gene is xerC [H]

Identifier: 87200080

GI number: 87200080

Start: 2204037

End: 2204930

Strand: Direct

Name: xerC [H]

Synonym: Saro_2064

Alternate gene names: 87200080

Gene position: 2204037-2204930 (Clockwise)

Preceding gene: 87200079

Following gene: 87200084

Centisome position: 61.88

GC content: 72.6

Gene sequence:

>894_bases
ATGACCACCGCCGAGATCCTCGAGGCGTGGAACGCTCACCTCGCCCTCGGGCGGCGCCGCTCCCCCCACACCGTCCGTGC
CTATGCCGCCACCGCCGCTCGCTTCCTGCGCGGCCTGCCCGGTGAACAGGACTGGTCCTCGCTCGCCCGGATCGACGCCG
CGACCTTGCGCGCCCACCTCGCCGACCGGCGGGCCGACGGCCTCGGCAACGTTTCCGCCGCCCGCGAATTGTCCGCGCTC
AAGACCTTCATCGCCTTTGCCCGCGAGCAGGCCGGGCACGAGGATGCCAGCCGACCGCGCCTGCGCGGCCCGCGCGTCAA
GAGGGGCCTGCCGCGTCCGATCACGCCGGACGAGGCTGTAAACCTTGCCGAAACCGTGGCCGACGATGCCGCCGTGCCGT
GGATCGCGGCGCGCGACCGCGCGGTCCTTCTCCTGCTCTACGGCGCGGGCATGCGCATTGCAGAGGCGCTTGCCCTTCCC
GCCTCGGCCCTCCCGCTGGGCGAGGCCGTGACGATCACCGGCAAAGGCGGACGCCAGCGTGTCGTCCCCCTGCTGCCAAT
CGTTCGTGCCGGGGTGGACGACTATGTCCGCCAGTGCCCGTGGCCGCTGGAGAAGGACAAGCCCCTGTTTCGCGGGGCGA
AGGGCGGTCCGCTGGCCCAGGGCATGGTCCAGCGCGCCGTGGCCCGGGCACGGATCGCCCTCGGCCTTCCTGCAACGGCG
ACGCCGCATGCGCTGCGCCATTCCTTCGCCACGCACCTGCTCGGCGCGGGCGCGGACCTGCGCAGCCTCCAGGAACTGCT
GGGCCACGCCAGCCTGTCGTCGACCCAGATCTACACGCGGGTCGATGCGGCAACCCTGCTCGACGTCTACCGCAACGCGC
ATCCGCGCGCCTGA

Upstream 100 bases:

>100_bases
ACCTGAACGACACCGAAACATGCCTGAAGGTGACCGAACAGGGCGCGCCGGTGCTGGAAGCGTTGCTGGCCGACCTCGTG
ACCGACACGATCATCGCCGC

Downstream 100 bases:

>100_bases
GCGACAACGCCTATTTGATGGCAGTGGTTGCCGGCCGGGGCAGCCTCAGCACCGAGAGAAGGCCACCAAGGTCCTCGCTT
TCCTTGAGTTCGACGCTGCC

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MTTAEILEAWNAHLALGRRRSPHTVRAYAATAARFLRGLPGEQDWSSLARIDAATLRAHLADRRADGLGNVSAARELSAL
KTFIAFAREQAGHEDASRPRLRGPRVKRGLPRPITPDEAVNLAETVADDAAVPWIAARDRAVLLLLYGAGMRIAEALALP
ASALPLGEAVTITGKGGRQRVVPLLPIVRAGVDDYVRQCPWPLEKDKPLFRGAKGGPLAQGMVQRAVARARIALGLPATA
TPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTRVDAATLLDVYRNAHPRA

Sequences:

>Translated_297_residues
MTTAEILEAWNAHLALGRRRSPHTVRAYAATAARFLRGLPGEQDWSSLARIDAATLRAHLADRRADGLGNVSAARELSAL
KTFIAFAREQAGHEDASRPRLRGPRVKRGLPRPITPDEAVNLAETVADDAAVPWIAARDRAVLLLLYGAGMRIAEALALP
ASALPLGEAVTITGKGGRQRVVPLLPIVRAGVDDYVRQCPWPLEKDKPLFRGAKGGPLAQGMVQRAVARARIALGLPATA
TPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTRVDAATLLDVYRNAHPRA
>Mature_296_residues
TTAEILEAWNAHLALGRRRSPHTVRAYAATAARFLRGLPGEQDWSSLARIDAATLRAHLADRRADGLGNVSAARELSALK
TFIAFAREQAGHEDASRPRLRGPRVKRGLPRPITPDEAVNLAETVADDAAVPWIAARDRAVLLLLYGAGMRIAEALALPA
SALPLGEAVTITGKGGRQRVVPLLPIVRAGVDDYVRQCPWPLEKDKPLFRGAKGGPLAQGMVQRAVARARIALGLPATAT
PHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTRVDAATLLDVYRNAHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=293, Percent_Identity=34.8122866894198, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1789261, Length=256, Percent_Identity=32.421875, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1790768, Length=177, Percent_Identity=31.638418079096, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 31842; Mature: 31711

Theoretical pI: Translated: 11.26; Mature: 11.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTAEILEAWNAHLALGRRRSPHTVRAYAATAARFLRGLPGEQDWSSLARIDAATLRAHL
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
ADRRADGLGNVSAARELSALKTFIAFAREQAGHEDASRPRLRGPRVKRGLPRPITPDEAV
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCHHHH
NLAETVADDAAVPWIAARDRAVLLLLYGAGMRIAEALALPASALPLGEAVTITGKGGRQR
HHHHHHHHHCCCCEEECCCCEEEEEEECCCHHHHHHHHCCHHCCCCCCEEEEECCCCCCC
VVPLLPIVRAGVDDYVRQCPWPLEKDKPLFRGAKGGPLAQGMVQRAVARARIALGLPATA
HHHHHHHHHCCHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
TPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTRVDAATLLDVYRNAHPRA
CHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTAEILEAWNAHLALGRRRSPHTVRAYAATAARFLRGLPGEQDWSSLARIDAATLRAHL
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
ADRRADGLGNVSAARELSALKTFIAFAREQAGHEDASRPRLRGPRVKRGLPRPITPDEAV
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCHHHH
NLAETVADDAAVPWIAARDRAVLLLLYGAGMRIAEALALPASALPLGEAVTITGKGGRQR
HHHHHHHHHCCCCEEECCCCEEEEEEECCCHHHHHHHHCCHHCCCCCCEEEEECCCCCCC
VVPLLPIVRAGVDDYVRQCPWPLEKDKPLFRGAKGGPLAQGMVQRAVARARIALGLPATA
HHHHHHHHHCCHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
TPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTRVDAATLLDVYRNAHPRA
CHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]