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The map label for this gene is yggW [C]

Identifier: 87200079

GI number: 87200079

Start: 2202886

End: 2204040

Strand: Direct

Name: yggW [C]

Synonym: Saro_2063

Alternate gene names: 87200079

Gene position: 2202886-2204040 (Clockwise)

Preceding gene: 87200078

Following gene: 87200080

Centisome position: 61.85

GC content: 65.19

Gene sequence:

>1155_bases
ATGCAGCCCCTTGCCCTCTACGTCCACTGGCCGTTCTGCCTCGCAAAGTGCCCTTATTGCGACTTCAACAGCCATGTGCG
CGCGCGGACCGACATCGCAGCGTGGCAGGCCGCGCTGCTGGCGGACATGCGACATGAAGCTCGGTTGACGCCGGGACGGC
CGCTCTCCTCGATCTTCTTCGGAGGCGGTACGCCATCGCTCATGCCGCCCGCGCTGGTCGAGGCATTGCTCGCCGAAGCA
GAGCGGCTCTGGGGCTTTGCCCCGGGCATCGAGATCACGCTGGAGGCGAACCCAAGTTCGGTCGAGGCCGCAAACTTCGC
GGCCCTGTCCAGCGCCGGAATCAATCGCGTCTCGCTTGGCCTTCAGGCGCTCGACGACAACACCCTGAAATTCCTCGGTC
GGCTGCATGACGTCAGCGAAAGCCTTGCCGCGCTGGATCTTGCCCAGACCCATTTCGGCCGTGTCAGCTTCGACCTCATC
TATGCCCGCCCCGGCCAGACCCCGGCGCAGTGGGAAGCTGAACTCAAGCGCGCTTTAGGCTTCGGAACCGGCCACCTCTC
GCTCTACCAGCTCACCATCGAGCCCGGCACCCGCTTCGCCACGCTCGTCCGCGAAGGCAAGCTCGCCCCTCTCGACGACG
ACGAGGCGGCCGACCTCTTTGCCCTGACCCGGGAGCTGACCTCCGCTGCCAGCCTGCCCGCCTACGAGACCAGCAACCAT
GCCCGCCCCGGCGAGGAAAGCCGCCACAACCTGACCTACTGGCGCTACCAGGACTACATCGGCATAGGACCTGGCGCCCA
TGGCCGGAGGCTTGGCGCGGCGACCGTGCGGCACAAGAAACCCGAGAACTTTCTCCGCGCGGTTTCCGAACATGGCCAAG
GCATTGTCGAAGAACGACAACTTACCCCGTCCGAACAGGCGATCGAAGCCGTGCTCATGGGTCTGCGCCTTGCCGAGGGC
ATTTCCCCGCCGGCGCTCGCCGCCCGCTTCGGCTTTGCGGAGGACGAAATGATCGACCGGCGCAATCGCGAATCCTTCGC
AAGAATGGGGTACCTGAACGACACCGAAACATGCCTGAAGGTGACCGAACAGGGCGCGCCGGTGCTGGAAGCGTTGCTGG
CCGACCTCGTGACCGACACGATCATCGCCGCATGA

Upstream 100 bases:

>100_bases
AGCTGGTCGCCGACCAGTTCTCCTGACGGCCTGACCGCTTCCCGCCATCGTCCTTGCCCCGGCCTTCGCCGGGATGGCGG
AACGTGCTAGGGCAACCCCG

Downstream 100 bases:

>100_bases
CCACCGCCGAGATCCTCGAGGCGTGGAACGCTCACCTCGCCCTCGGGCGGCGCCGCTCCCCCCACACCGTCCGTGCCTAT
GCCGCCACCGCCGCTCGCTT

Product: coproporphyrinogen III oxidase

Products: Protoporphyrinogen IX; CO2; H2O

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MQPLALYVHWPFCLAKCPYCDFNSHVRARTDIAAWQAALLADMRHEARLTPGRPLSSIFFGGGTPSLMPPALVEALLAEA
ERLWGFAPGIEITLEANPSSVEAANFAALSSAGINRVSLGLQALDDNTLKFLGRLHDVSESLAALDLAQTHFGRVSFDLI
YARPGQTPAQWEAELKRALGFGTGHLSLYQLTIEPGTRFATLVREGKLAPLDDDEAADLFALTRELTSAASLPAYETSNH
ARPGEESRHNLTYWRYQDYIGIGPGAHGRRLGAATVRHKKPENFLRAVSEHGQGIVEERQLTPSEQAIEAVLMGLRLAEG
ISPPALAARFGFAEDEMIDRRNRESFARMGYLNDTETCLKVTEQGAPVLEALLADLVTDTIIAA

Sequences:

>Translated_384_residues
MQPLALYVHWPFCLAKCPYCDFNSHVRARTDIAAWQAALLADMRHEARLTPGRPLSSIFFGGGTPSLMPPALVEALLAEA
ERLWGFAPGIEITLEANPSSVEAANFAALSSAGINRVSLGLQALDDNTLKFLGRLHDVSESLAALDLAQTHFGRVSFDLI
YARPGQTPAQWEAELKRALGFGTGHLSLYQLTIEPGTRFATLVREGKLAPLDDDEAADLFALTRELTSAASLPAYETSNH
ARPGEESRHNLTYWRYQDYIGIGPGAHGRRLGAATVRHKKPENFLRAVSEHGQGIVEERQLTPSEQAIEAVLMGLRLAEG
ISPPALAARFGFAEDEMIDRRNRESFARMGYLNDTETCLKVTEQGAPVLEALLADLVTDTIIAA
>Mature_384_residues
MQPLALYVHWPFCLAKCPYCDFNSHVRARTDIAAWQAALLADMRHEARLTPGRPLSSIFFGGGTPSLMPPALVEALLAEA
ERLWGFAPGIEITLEANPSSVEAANFAALSSAGINRVSLGLQALDDNTLKFLGRLHDVSESLAALDLAQTHFGRVSFDLI
YARPGQTPAQWEAELKRALGFGTGHLSLYQLTIEPGTRFATLVREGKLAPLDDDEAADLFALTRELTSAASLPAYETSNH
ARPGEESRHNLTYWRYQDYIGIGPGAHGRRLGAATVRHKKPENFLRAVSEHGQGIVEERQLTPSEQAIEAVLMGLRLAEG
ISPPALAARFGFAEDEMIDRRNRESFARMGYLNDTETCLKVTEQGAPVLEALLADLVTDTIIAA

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=299, Percent_Identity=40.8026755852843, Blast_Score=221, Evalue=1e-57,
Organism=Escherichia coli, GI1789325, Length=385, Percent_Identity=37.4025974025974, Blast_Score=227, Evalue=1e-60,
Organism=Escherichia coli, GI87082341, Length=383, Percent_Identity=26.3707571801567, Blast_Score=111, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: 1.3.3.3

Molecular weight: Translated: 41900; Mature: 41900

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPLALYVHWPFCLAKCPYCDFNSHVRARTDIAAWQAALLADMRHEARLTPGRPLSSIFF
CCCEEEEEECHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEE
GGGTPSLMPPALVEALLAEAERLWGFAPGIEITLEANPSSVEAANFAALSSAGINRVSLG
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCHHHHH
LQALDDNTLKFLGRLHDVSESLAALDLAQTHFGRVSFDLIYARPGQTPAQWEAELKRALG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHC
FGTGHLSLYQLTIEPGTRFATLVREGKLAPLDDDEAADLFALTRELTSAASLPAYETSNH
CCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
ARPGEESRHNLTYWRYQDYIGIGPGAHGRRLGAATVRHKKPENFLRAVSEHGQGIVEERQ
CCCCCCCCCCCEEEEEECEEECCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCHHHHC
LTPSEQAIEAVLMGLRLAEGISPPALAARFGFAEDEMIDRRNRESFARMGYLNDTETCLK
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
VTEQGAPVLEALLADLVTDTIIAA
HHHCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQPLALYVHWPFCLAKCPYCDFNSHVRARTDIAAWQAALLADMRHEARLTPGRPLSSIFF
CCCEEEEEECHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEE
GGGTPSLMPPALVEALLAEAERLWGFAPGIEITLEANPSSVEAANFAALSSAGINRVSLG
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCHHHHH
LQALDDNTLKFLGRLHDVSESLAALDLAQTHFGRVSFDLIYARPGQTPAQWEAELKRALG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHC
FGTGHLSLYQLTIEPGTRFATLVREGKLAPLDDDEAADLFALTRELTSAASLPAYETSNH
CCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
ARPGEESRHNLTYWRYQDYIGIGPGAHGRRLGAATVRHKKPENFLRAVSEHGQGIVEERQ
CCCCCCCCCCCEEEEEECEEECCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCHHHHC
LTPSEQAIEAVLMGLRLAEGISPPALAARFGFAEDEMIDRRNRESFARMGYLNDTETCLK
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
VTEQGAPVLEALLADLVTDTIIAA
HHHCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Coproporphyrinogen III; O2; H+

Specific reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]