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The map label for this gene is tnpB1 [H]

Identifier: 87199952

GI number: 87199952

Start: 2049480

End: 2051612

Strand: Direct

Name: tnpB1 [H]

Synonym: Saro_1935

Alternate gene names: 87199952

Gene position: 2049480-2051612 (Clockwise)

Preceding gene: 87199951

Following gene: 87199953

Centisome position: 57.54

GC content: 62.87

Gene sequence:

>2133_bases
ATGGGCCTGACGCCGCTGGCGCTCGTCGGCGGCACGCCGCACGATACCGATCGCTACAACAACTGGCTTGAGGGGCGCCT
CGCGGAGATATCCCCCCTCCTCGTCGCCAATCCCATTTGGTCGGACGCCATGATGGGTGAGGTGTTCGGCCATCCCTGGC
TGAGCCAGACATACGCAAGCTTGCCGCTTCAGGCTGCGGTTCCGGTACTCACCAACGAGATCAAGGCTTACCTGGCGGTA
TCCGTTCTCGACGATCGCAAGGCGGACGCCCACTGGTTCCAGCGCCGGATCCCGGTGATCCGCTATCTGGTAGAGGAAGG
CGCGGACCTGCTTGGTCACTTTGAGGCGGGCTGCCTTGCCGACATCCCTCACCCCGGCTTCGCGCCATCAGATGACGAGG
GTGCGCGCAAACGGAACCACCACAACGATGCAGTGCTGGAGTGCTACGCCGCCTGGTATGGCGCGAATTATGGACGGCGC
AGGCAAAGCCAGACCCGCCAGTGGATCCGGGGCGGCAAGATCGTCACCAGCGAGTTCCGCTCACCGGAAGTGCAGCTGTT
CGGTGATATCCATCGCTTCGCGATCATCAACCGGGCGCAGATGGCACCGATGCATGACCGCGACATCATCCTGCTCAACG
ATCTCTACAGCGAGGAGGACACACGCTTCCGCGATCGGCAACGGCGAAGCGACACCTATATCAACTTCCTGAACTTCGAG
CCGTGGCTGCGCCCGCTGATGCGCGGCTTCCTGCTCGACAAGGTCGCACATGGGGAATTTGCGCCAAGAACGGTGATCGC
GATGCGATCTCGGTTACGGCTGTTTGCGCAGTTCCTCCACGAAGAATCCGTCGCTGGTCCTGCGAAGATCAACGAACTAA
CGATGGAGCGCTATCTTGCATGGGGAAACGCGCGCAATGCCGCCGGCAAGAACTGGTACACCGACATCGTCCAACTGATG
CGGGCAGCACCGGTGCTACTGCCGGGGGAATGGCCGCGGATCGCGCTCGACAAGCGCGCGGCGCGGCGCATCCGTTACAA
GCAGGCACCGGATGACCCGCGCAACCGGCTCTACGCTTCGCGAGAGGGCGCCAACCGGGCGGCGCCTCCTGAGGCCTTGG
CCGCGATGATGGCCAGGCTCGATGAACTGCCTGCCCCTATCCCGGTAATCTTCATGATCGGGATCACCACCGGTGCGCGA
GCCGAAGACCTGCATGCCTTGCTCTTCGACTGCCTGCGGCCCGATCCGCACGACAAGCGGTTCATGCTGTTCACGTTCTG
GCAGAACAAGGTCAGCCGCTGGAACACCAAGCCCTTGCTGGCGACCGATCCCGCGCACCGGGCCATGATCGAGTTGATCG
AAGCCCAGCAGGATCGCGTCCGGCAGCGTTACGGGCGCGCCACGAAATACCTGTTCCCCGTCTTTTACGGCAAGCGGGAA
TCGTTCCTCGGCTACAACTGGACCTTGCAGGAGCTCAGGATGCTGTGCCTCAGGCACGGGATCGTCGATGGCGAAGGCAA
GCCGTTCGACTTCTCATGGCATCCGTTGCGCCACCATCGAGGGACACAAATGGCGGCCGAAGGCCACGACATCCTGAGCA
TCATGTTCGAGCTCGGCCATGCCTCGCCGGATATGGCGTCGATGTACGTCAACAAGCGTCTCGATCTCAAGAAGAACGCC
TTGCTGCGAAAGGGTGGCGGCCAGTTCTTCACAATCGCGGGCAAGGTCGACGAAGCGGTCGGCGATCTCCTGCTGCGCAA
GGAAACCATGCTGGCCACGCGGGTCTGCGGCGGCGCCTGCACGCTGCCAGGGCAACTCGGCGAATGGTGCGAGCACGCCC
ACGCCTGCCTGACCTGCCGGTTCTTCCGCGCCGATGGCGGCGACGTGGAGCACTTCCGCTGTGAACGGGCCGGACTTTAC
GCCGCGATCGAAGGGCTCGAGCAGGAAGCGCAGAACTACGAGGAAGGCGGACAGACCCGCATGGCCGACATCACGCGAAA
GCGCCTGCAACGCAATAAGGATGCGGTCCACAACACCGACACCATCATCCGCTCCATCGAGGAGCACGGCCTCTACAAGG
GTGAAAAGCAGCGCTACAGGCCGGCCACTGCTCGAGAGGAAGCGACGTCATGA

Upstream 100 bases:

>100_bases
TCGCCTCGGAAATCCGCAGGCTTTACCTCACAGGACCCGACGAGGTGCATGAAAGGCTTGAGAAACTTCGCGAGGCTGAG
CTGCTCGGAAAGGATCTGCG

Downstream 100 bases:

>100_bases
CCATGGGACCGGATCTGCGGATCGCAACACTCAACGATGCCCGCAGCCGTCGTAGCGCAGAGAAGCGCGCTGCAGTCGAG
GATGCGATCATGCGGCTGCG

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 710; Mature: 709

Protein sequence:

>710_residues
MGLTPLALVGGTPHDTDRYNNWLEGRLAEISPLLVANPIWSDAMMGEVFGHPWLSQTYASLPLQAAVPVLTNEIKAYLAV
SVLDDRKADAHWFQRRIPVIRYLVEEGADLLGHFEAGCLADIPHPGFAPSDDEGARKRNHHNDAVLECYAAWYGANYGRR
RQSQTRQWIRGGKIVTSEFRSPEVQLFGDIHRFAIINRAQMAPMHDRDIILLNDLYSEEDTRFRDRQRRSDTYINFLNFE
PWLRPLMRGFLLDKVAHGEFAPRTVIAMRSRLRLFAQFLHEESVAGPAKINELTMERYLAWGNARNAAGKNWYTDIVQLM
RAAPVLLPGEWPRIALDKRAARRIRYKQAPDDPRNRLYASREGANRAAPPEALAAMMARLDELPAPIPVIFMIGITTGAR
AEDLHALLFDCLRPDPHDKRFMLFTFWQNKVSRWNTKPLLATDPAHRAMIELIEAQQDRVRQRYGRATKYLFPVFYGKRE
SFLGYNWTLQELRMLCLRHGIVDGEGKPFDFSWHPLRHHRGTQMAAEGHDILSIMFELGHASPDMASMYVNKRLDLKKNA
LLRKGGGQFFTIAGKVDEAVGDLLLRKETMLATRVCGGACTLPGQLGEWCEHAHACLTCRFFRADGGDVEHFRCERAGLY
AAIEGLEQEAQNYEEGGQTRMADITRKRLQRNKDAVHNTDTIIRSIEEHGLYKGEKQRYRPATAREEATS

Sequences:

>Translated_710_residues
MGLTPLALVGGTPHDTDRYNNWLEGRLAEISPLLVANPIWSDAMMGEVFGHPWLSQTYASLPLQAAVPVLTNEIKAYLAV
SVLDDRKADAHWFQRRIPVIRYLVEEGADLLGHFEAGCLADIPHPGFAPSDDEGARKRNHHNDAVLECYAAWYGANYGRR
RQSQTRQWIRGGKIVTSEFRSPEVQLFGDIHRFAIINRAQMAPMHDRDIILLNDLYSEEDTRFRDRQRRSDTYINFLNFE
PWLRPLMRGFLLDKVAHGEFAPRTVIAMRSRLRLFAQFLHEESVAGPAKINELTMERYLAWGNARNAAGKNWYTDIVQLM
RAAPVLLPGEWPRIALDKRAARRIRYKQAPDDPRNRLYASREGANRAAPPEALAAMMARLDELPAPIPVIFMIGITTGAR
AEDLHALLFDCLRPDPHDKRFMLFTFWQNKVSRWNTKPLLATDPAHRAMIELIEAQQDRVRQRYGRATKYLFPVFYGKRE
SFLGYNWTLQELRMLCLRHGIVDGEGKPFDFSWHPLRHHRGTQMAAEGHDILSIMFELGHASPDMASMYVNKRLDLKKNA
LLRKGGGQFFTIAGKVDEAVGDLLLRKETMLATRVCGGACTLPGQLGEWCEHAHACLTCRFFRADGGDVEHFRCERAGLY
AAIEGLEQEAQNYEEGGQTRMADITRKRLQRNKDAVHNTDTIIRSIEEHGLYKGEKQRYRPATAREEATS
>Mature_709_residues
GLTPLALVGGTPHDTDRYNNWLEGRLAEISPLLVANPIWSDAMMGEVFGHPWLSQTYASLPLQAAVPVLTNEIKAYLAVS
VLDDRKADAHWFQRRIPVIRYLVEEGADLLGHFEAGCLADIPHPGFAPSDDEGARKRNHHNDAVLECYAAWYGANYGRRR
QSQTRQWIRGGKIVTSEFRSPEVQLFGDIHRFAIINRAQMAPMHDRDIILLNDLYSEEDTRFRDRQRRSDTYINFLNFEP
WLRPLMRGFLLDKVAHGEFAPRTVIAMRSRLRLFAQFLHEESVAGPAKINELTMERYLAWGNARNAAGKNWYTDIVQLMR
AAPVLLPGEWPRIALDKRAARRIRYKQAPDDPRNRLYASREGANRAAPPEALAAMMARLDELPAPIPVIFMIGITTGARA
EDLHALLFDCLRPDPHDKRFMLFTFWQNKVSRWNTKPLLATDPAHRAMIELIEAQQDRVRQRYGRATKYLFPVFYGKRES
FLGYNWTLQELRMLCLRHGIVDGEGKPFDFSWHPLRHHRGTQMAAEGHDILSIMFELGHASPDMASMYVNKRLDLKKNAL
LRKGGGQFFTIAGKVDEAVGDLLLRKETMLATRVCGGACTLPGQLGEWCEHAHACLTCRFFRADGGDVEHFRCERAGLYA
AIEGLEQEAQNYEEGGQTRMADITRKRLQRNKDAVHNTDTIIRSIEEHGLYKGEKQRYRPATAREEATS

Specific function: One of three proteins encoded by transposon Tn554 required for its transposition [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 81081; Mature: 80949

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLTPLALVGGTPHDTDRYNNWLEGRLAEISPLLVANPIWSDAMMGEVFGHPWLSQTYAS
CCCCCEEEECCCCCCCHHHHHHHHCHHHHCCCHHEECCCHHHHHHHHHHCCCHHHHHHHH
LPLQAAVPVLTNEIKAYLAVSVLDDRKADAHWFQRRIPVIRYLVEEGADLLGHFEAGCLA
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCEE
DIPHPGFAPSDDEGARKRNHHNDAVLECYAAWYGANYGRRRQSQTRQWIRGGKIVTSEFR
CCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCC
SPEVQLFGDIHRFAIINRAQMAPMHDRDIILLNDLYSEEDTRFRDRQRRSDTYINFLNFE
CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCC
PWLRPLMRGFLLDKVAHGEFAPRTVIAMRSRLRLFAQFLHEESVAGPAKINELTMERYLA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
WGNARNAAGKNWYTDIVQLMRAAPVLLPGEWPRIALDKRAARRIRYKQAPDDPRNRLYAS
HCCCCCCCCCHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHEEEC
REGANRAAPPEALAAMMARLDELPAPIPVIFMIGITTGARAEDLHALLFDCLRPDPHDKR
CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCE
FMLFTFWQNKVSRWNTKPLLATDPAHRAMIELIEAQQDRVRQRYGRATKYLFPVFYGKRE
EEEEEEHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
SFLGYNWTLQELRMLCLRHGIVDGEGKPFDFSWHPLRHHRGTQMAAEGHDILSIMFELGH
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHCC
ASPDMASMYVNKRLDLKKNALLRKGGGQFFTIAGKVDEAVGDLLLRKETMLATRVCGGAC
CCCHHHHHHHHHCCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCC
TLPGQLGEWCEHAHACLTCRFFRADGGDVEHFRCERAGLYAAIEGLEQEAQNYEEGGQTR
CCCHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
MADITRKRLQRNKDAVHNTDTIIRSIEEHGLYKGEKQRYRPATAREEATS
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHCCCC
>Mature Secondary Structure 
GLTPLALVGGTPHDTDRYNNWLEGRLAEISPLLVANPIWSDAMMGEVFGHPWLSQTYAS
CCCCEEEECCCCCCCHHHHHHHHCHHHHCCCHHEECCCHHHHHHHHHHCCCHHHHHHHH
LPLQAAVPVLTNEIKAYLAVSVLDDRKADAHWFQRRIPVIRYLVEEGADLLGHFEAGCLA
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCEE
DIPHPGFAPSDDEGARKRNHHNDAVLECYAAWYGANYGRRRQSQTRQWIRGGKIVTSEFR
CCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCC
SPEVQLFGDIHRFAIINRAQMAPMHDRDIILLNDLYSEEDTRFRDRQRRSDTYINFLNFE
CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCC
PWLRPLMRGFLLDKVAHGEFAPRTVIAMRSRLRLFAQFLHEESVAGPAKINELTMERYLA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
WGNARNAAGKNWYTDIVQLMRAAPVLLPGEWPRIALDKRAARRIRYKQAPDDPRNRLYAS
HCCCCCCCCCHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHEEEC
REGANRAAPPEALAAMMARLDELPAPIPVIFMIGITTGARAEDLHALLFDCLRPDPHDKR
CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCE
FMLFTFWQNKVSRWNTKPLLATDPAHRAMIELIEAQQDRVRQRYGRATKYLFPVFYGKRE
EEEEEEHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
SFLGYNWTLQELRMLCLRHGIVDGEGKPFDFSWHPLRHHRGTQMAAEGHDILSIMFELGH
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHCC
ASPDMASMYVNKRLDLKKNALLRKGGGQFFTIAGKVDEAVGDLLLRKETMLATRVCGGAC
CCCHHHHHHHHHCCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCC
TLPGQLGEWCEHAHACLTCRFFRADGGDVEHFRCERAGLYAAIEGLEQEAQNYEEGGQTR
CCCHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
MADITRKRLQRNKDAVHNTDTIIRSIEEHGLYKGEKQRYRPATAREEATS
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]