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The map label for this gene is tnpA1 [H]

Identifier: 87199951

GI number: 87199951

Start: 2048323

End: 2049489

Strand: Direct

Name: tnpA1 [H]

Synonym: Saro_1934

Alternate gene names: 87199951

Gene position: 2048323-2049489 (Clockwise)

Preceding gene: 87199949

Following gene: 87199952

Centisome position: 57.51

GC content: 61.78

Gene sequence:

>1167_bases
ATGCCCGGCGGTCGCCGGTCGTGGACGGTATTGGATGATGACGGCGATGTCGTCGAGTGCCTTCGTCACTGGATCGTCCA
TCTCGAACAGACCCATGCGTCACCAAACACGATCCGCGCTTATGTTCGCCACGTTGTGGACTTCGCTAGCTTCCTCGGCG
CAAACGGCGCCGGCATCCATGAAGCCACGGTTGCGCTGTATGACAGCTTCCTTGCCTGGCGGCTTGCCCGCCGAAAGGAT
GCGCTGCCAAGTCCTCGGCTGATCCTGCTACGCAAGCAGGAAACGCGGATTCTGGCACCATCGACGCGCAACCAGATCCA
GCTCGCGGTCAAATCGTTCTACCGCTTTTACAACGGCACTGACGACTTCGCGGTCGATACGACCGAGGTCACAAAGGCCT
ATGACGGCCACCGGATCTACAAGCCGTTCCTTGAGCATATCAGCCAGCGACGGACGACACGGCGCAAAGACCGTTATCTC
TCGGGCGATCCCGGCCGGGTCCAGCAGCAGGTGCTCAAGAAGCGGCTGACGCCGAGCGAGGTTCTGCGGCTGATCGAGGC
CTGCGGGCTCGCGCGCGACGCCTTCCTGGTCGTGCTGCTCTACAACACCGGCCTTAGGATCGGTGAAGCGCTGGGCCTGC
GCCATGTCGATATCGATCTCGCCGAAAAGGTCATCTGGGTCGTTCCGCGCGAAGACAATGCCAATGAGGCCCGTGCGAAA
TCGGGCCGGACGCGCGGTGTGCCGGTGCACGACTACGTGCTCAACATGTACGTCGATTACATCACCAGCGACGAATATCT
GCCAGCCTTCGAGTCCGGCGCCGAGTACGTCTTCACCAATGTCAAAGCCGGCGTCATCGGGCACGCCATGAGCCTGTCCT
ACGCGCAGAAGCTCGCGGGCCTGCTGGAGCAGCGCACCCATATCGCCTTCAGCTGGCACATGTTCCGCCACAGCCATGCA
TCCGAGGCGATCGCGGCGGGATACAGCCTGCTCGAAGTGGCCGACCGGCTCGGGCATGCCAGCCCGCAAACGACAGCGGC
GTTCTATCAGCACCTGTTCGCCTCGGAAATCCGCAGGCTTTACCTCACAGGACCCGACGAGGTGCATGAAAGGCTTGAGA
AACTTCGCGAGGCTGAGCTGCTCGGAAAGGATCTGCGATGGGCCTGA

Upstream 100 bases:

>100_bases
GTGATGGCGAAAGGCTTGCAGTCACGGGGGTCTTTCAACAGTATCAGCGACCGTGTCCACTCCGTTCGCTACGACGCCCT
GGCAGGCTGCGCGCATCGAA

Downstream 100 bases:

>100_bases
CGCCGCTGGCGCTCGTCGGCGGCACGCCGCACGATACCGATCGCTACAACAACTGGCTTGAGGGGCGCCTCGCGGAGATA
TCCCCCCTCCTCGTCGCCAA

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MPGGRRSWTVLDDDGDVVECLRHWIVHLEQTHASPNTIRAYVRHVVDFASFLGANGAGIHEATVALYDSFLAWRLARRKD
ALPSPRLILLRKQETRILAPSTRNQIQLAVKSFYRFYNGTDDFAVDTTEVTKAYDGHRIYKPFLEHISQRRTTRRKDRYL
SGDPGRVQQQVLKKRLTPSEVLRLIEACGLARDAFLVVLLYNTGLRIGEALGLRHVDIDLAEKVIWVVPREDNANEARAK
SGRTRGVPVHDYVLNMYVDYITSDEYLPAFESGAEYVFTNVKAGVIGHAMSLSYAQKLAGLLEQRTHIAFSWHMFRHSHA
SEAIAAGYSLLEVADRLGHASPQTTAAFYQHLFASEIRRLYLTGPDEVHERLEKLREAELLGKDLRWA

Sequences:

>Translated_388_residues
MPGGRRSWTVLDDDGDVVECLRHWIVHLEQTHASPNTIRAYVRHVVDFASFLGANGAGIHEATVALYDSFLAWRLARRKD
ALPSPRLILLRKQETRILAPSTRNQIQLAVKSFYRFYNGTDDFAVDTTEVTKAYDGHRIYKPFLEHISQRRTTRRKDRYL
SGDPGRVQQQVLKKRLTPSEVLRLIEACGLARDAFLVVLLYNTGLRIGEALGLRHVDIDLAEKVIWVVPREDNANEARAK
SGRTRGVPVHDYVLNMYVDYITSDEYLPAFESGAEYVFTNVKAGVIGHAMSLSYAQKLAGLLEQRTHIAFSWHMFRHSHA
SEAIAAGYSLLEVADRLGHASPQTTAAFYQHLFASEIRRLYLTGPDEVHERLEKLREAELLGKDLRWA
>Mature_387_residues
PGGRRSWTVLDDDGDVVECLRHWIVHLEQTHASPNTIRAYVRHVVDFASFLGANGAGIHEATVALYDSFLAWRLARRKDA
LPSPRLILLRKQETRILAPSTRNQIQLAVKSFYRFYNGTDDFAVDTTEVTKAYDGHRIYKPFLEHISQRRTTRRKDRYLS
GDPGRVQQQVLKKRLTPSEVLRLIEACGLARDAFLVVLLYNTGLRIGEALGLRHVDIDLAEKVIWVVPREDNANEARAKS
GRTRGVPVHDYVLNMYVDYITSDEYLPAFESGAEYVFTNVKAGVIGHAMSLSYAQKLAGLLEQRTHIAFSWHMFRHSHAS
EAIAAGYSLLEVADRLGHASPQTTAAFYQHLFASEIRRLYLTGPDEVHERLEKLREAELLGKDLRWA

Specific function: One of three proteins encoded by transposon Tn554 required for its transposition [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44121; Mature: 43990

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGGRRSWTVLDDDGDVVECLRHWIVHLEQTHASPNTIRAYVRHVVDFASFLGANGAGIH
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
EATVALYDSFLAWRLARRKDALPSPRLILLRKQETRILAPSTRNQIQLAVKSFYRFYNGT
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHCCC
DDFAVDTTEVTKAYDGHRIYKPFLEHISQRRTTRRKDRYLSGDPGRVQQQVLKKRLTPSE
CCCEECHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHH
VLRLIEACGLARDAFLVVLLYNTGLRIGEALGLRHVDIDLAEKVIWVVPREDNANEARAK
HHHHHHHHCCCHHHHEEEEHHHCCCHHHHHHCCEEECHHHHCCEEEEEECCCCCCHHHHH
SGRTRGVPVHDYVLNMYVDYITSDEYLPAFESGAEYVFTNVKAGVIGHAMSLSYAQKLAG
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHCCCCEEEECCHHHHHHHHHHHHHHHHHHH
LLEQRTHIAFSWHMFRHSHASEAIAAGYSLLEVADRLGHASPQTTAAFYQHLFASEIRRL
HHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHE
YLTGPDEVHERLEKLREAELLGKDLRWA
ECCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PGGRRSWTVLDDDGDVVECLRHWIVHLEQTHASPNTIRAYVRHVVDFASFLGANGAGIH
CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
EATVALYDSFLAWRLARRKDALPSPRLILLRKQETRILAPSTRNQIQLAVKSFYRFYNGT
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHCCC
DDFAVDTTEVTKAYDGHRIYKPFLEHISQRRTTRRKDRYLSGDPGRVQQQVLKKRLTPSE
CCCEECHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHH
VLRLIEACGLARDAFLVVLLYNTGLRIGEALGLRHVDIDLAEKVIWVVPREDNANEARAK
HHHHHHHHCCCHHHHEEEEHHHCCCHHHHHHCCEEECHHHHCCEEEEEECCCCCCHHHHH
SGRTRGVPVHDYVLNMYVDYITSDEYLPAFESGAEYVFTNVKAGVIGHAMSLSYAQKLAG
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHCCCCEEEECCHHHHHHHHHHHHHHHHHHH
LLEQRTHIAFSWHMFRHSHASEAIAAGYSLLEVADRLGHASPQTTAAFYQHLFASEIRRL
HHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHE
YLTGPDEVHERLEKLREAELLGKDLRWA
ECCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]