| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is ntrY [H]
Identifier: 87199946
GI number: 87199946
Start: 2041595
End: 2043823
Strand: Direct
Name: ntrY [H]
Synonym: Saro_1929
Alternate gene names: 87199946
Gene position: 2041595-2043823 (Clockwise)
Preceding gene: 87199945
Following gene: 87199947
Centisome position: 57.32
GC content: 63.17
Gene sequence:
>2229_bases ATGGAGCGCACACCTTCAGTTCCGGTTCGCCGATTGCCGCGGTGGTGGCGCCGCGTACTCGTCAGCCTGCGCCGTGCGAA CGTCTTCCTTCTTCTGGAGATCGCGGCATCCGCAGTTCTTGCTCTGATGCTTGCAGTGAGCTGGCTAACGCTCACGTCTT CCAGCGCCGAGGGGCAAATTCTTCCATCGCGCCTGACCTCGAGCCTGCTCATCGGCACCTTGGTTCCGGCTATGGCCCTG ATAATCCTGGTCGGTCGCCGTCTCGCAATTCGGCGTGCCGCGCAGAGCGTTCTGGGGTCGAGCGGCCGGCTGCACGTCCG CCTTGTGTGGCTATTCTCGCTCATCGCCGCGATCCCGACTTTGCTTGTCGTGGTATTTGCCTCGTTCCTTTTCCAGTCCG GCGTGGAGTTCTGGTTCTCCGACAATTCGCGCGGAATGCTCGAGAATGCGAACAAGCTTGCGCGCGGATATTACGAGGAC AAGTTGCGCGATGTCGGCAACGAGACCGTGGCCATGGCTGGCGACATCAGGGACTACCTGGATCAGGCCGCCATCACCTC GACCGAATTTGCAGAAGGCTATTCGTTCCAGGTTCTTAGCCGCCAACTCAACGAATCCGCCATCCTCGAACGCGCACCGG ATGGTTCGCTCCGCACGGCAGCCATCGTCGACCCGGAAAAGTCCGACCGCCGTCAGCGTGTCACTCCGCAGGACCTGAAG CGCCTCGACGCGGGCGAAAGCGTGGTCGTGAGCGCCTCTGCGCAACGCATCGAAGCCGTTACCCCGGTCGATAAACGGCG CGGCATCTATCTCTACGCCGCCCGTACATCGGATGCCCTCGCACTCGAACAGTGGGAGCGCGCTCAGACTGTCCTCAAGG CCTATGACATGCTGACGACGCGGGCGAGGGCGCTGCAATTGCGCTTTAATCTCGCGCTGTTCGGCGTCAGCCTGGCGCTC GTCGGCCTCGCGGTCTGGGCGGCGTTGCGCTTTGCCGACCGCCAGGTCGCTCCGCTGGCCGAACTCGTCTCAGCGGCCCG CACGATCGGAAGCGGCAACTTCGCCATGCGCGTCGCGCAGAACAGCGGCACCGACGAAATCGGCCTGCTCGCGCGTGCCT TCAACCGCATGACCCAGCAGCTTGAGGGCCAGACCCAGGCGCTTGTCTCGGCCAACGCACAGCTAGAGGTGCGCCGCGCC TTTATCGAAGCCGTACTGGAATCGATCACGGCAGGCATCGTCTCGATCGGCCGCGACGGAGCGATCCAGCTCATCAATTC GTCCGCGCAGCGACTGCTTCTGGATACAGACGCTGCAAGCCCCATTGGCCGCGCTCTTTCCGATGTTTCGCCGGTCTTTG CCCAACTCGTTGCGTCGGGCCAACCCAACAACGTGATCCAGCATCCCCTCGGTGGTGATCTGCGCACGCTCGCCGTGCGC GTGGTGGAAGACAACAACGGCCACGTCATCACTTTCGAGGACATTACCCGACAGCTTCTCGACCAGCGCCGTGCGGCCTG GTCCGACGTGGCGCGCCGTATCGCGCACGAGATCAAGAACCCGTTGACCCCGATCCAGCTCGCGACCGAACGTCTCAAGC GCCGCTACGGGCGCCAGATCGAGAATGACCCGGAACTGTTCGAGGAGTTGACGAGCACGATCATCCGCCAGGTCGGAGAC CTCCGGAAGATGGTCGACGAGTTTTCCTCGTTCGCGCGACTGCCTAAGCCGGTGTTCCGGGCCGAGGATGCCAGCGACCT GGTCCGCCAGTCGCTGTTCCTCCAGGAAGTTGCGCATACCGCCATCGATTTCAGCTTCGCATGCGACGCGCCGTCCATGC CCATCCAGTGCGACCGCCACCAGTTCGCACAAGTCATGACCAACGTCCTCAAGAACGCCGTCGAGGCGATCGAGGCCAAA GCCAAGACCGAGGACGTCGATTATCGCGGTCGCATAGCTGTGACCCTTGCCGGCGATCACGATACCGTGACGGTCAGCGT CACTGACAACGGCATCGGCCTTCCTGCCGAACGCGAACGCATACTCGAACCGTACATGACGACGCGCGAAAAGGGCACTG GCCTCGGTCTGGCGATCGTTCACAAGATCGTCGAGGAGCACGGCGGCGAGATGGCCTTCACCGCCGAGCCCGGCGGCGGC ACCCGCGTAACAATGCGCTTCGCCCGCGATCCGCTTGCAACTTCCGCCCACCACGCCGAACAGGACTGA
Upstream 100 bases:
>100_bases CCAGTCGCGATTAGCCAGAGCTGCCGGTGAGAAGCGGCCTAACGACGCTCGACGGTTTCCTCTTGCATTTTTGCAACAGG GGTGTTGTGAAGTCGCAACG
Downstream 100 bases:
>100_bases CAGGACCCTCACGATGGCACTCGATATCCTCATCGTCGATGACGAACGCGACATCCGCGAACTGGTAGCGGGGGTGCTGA GCGACGAAGGCTATGGCTGT
Product: periplasmic sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 742; Mature: 742
Protein sequence:
>742_residues MERTPSVPVRRLPRWWRRVLVSLRRANVFLLLEIAASAVLALMLAVSWLTLTSSSAEGQILPSRLTSSLLIGTLVPAMAL IILVGRRLAIRRAAQSVLGSSGRLHVRLVWLFSLIAAIPTLLVVVFASFLFQSGVEFWFSDNSRGMLENANKLARGYYED KLRDVGNETVAMAGDIRDYLDQAAITSTEFAEGYSFQVLSRQLNESAILERAPDGSLRTAAIVDPEKSDRRQRVTPQDLK RLDAGESVVVSASAQRIEAVTPVDKRRGIYLYAARTSDALALEQWERAQTVLKAYDMLTTRARALQLRFNLALFGVSLAL VGLAVWAALRFADRQVAPLAELVSAARTIGSGNFAMRVAQNSGTDEIGLLARAFNRMTQQLEGQTQALVSANAQLEVRRA FIEAVLESITAGIVSIGRDGAIQLINSSAQRLLLDTDAASPIGRALSDVSPVFAQLVASGQPNNVIQHPLGGDLRTLAVR VVEDNNGHVITFEDITRQLLDQRRAAWSDVARRIAHEIKNPLTPIQLATERLKRRYGRQIENDPELFEELTSTIIRQVGD LRKMVDEFSSFARLPKPVFRAEDASDLVRQSLFLQEVAHTAIDFSFACDAPSMPIQCDRHQFAQVMTNVLKNAVEAIEAK AKTEDVDYRGRIAVTLAGDHDTVTVSVTDNGIGLPAERERILEPYMTTREKGTGLGLAIVHKIVEEHGGEMAFTAEPGGG TRVTMRFARDPLATSAHHAEQD
Sequences:
>Translated_742_residues MERTPSVPVRRLPRWWRRVLVSLRRANVFLLLEIAASAVLALMLAVSWLTLTSSSAEGQILPSRLTSSLLIGTLVPAMAL IILVGRRLAIRRAAQSVLGSSGRLHVRLVWLFSLIAAIPTLLVVVFASFLFQSGVEFWFSDNSRGMLENANKLARGYYED KLRDVGNETVAMAGDIRDYLDQAAITSTEFAEGYSFQVLSRQLNESAILERAPDGSLRTAAIVDPEKSDRRQRVTPQDLK RLDAGESVVVSASAQRIEAVTPVDKRRGIYLYAARTSDALALEQWERAQTVLKAYDMLTTRARALQLRFNLALFGVSLAL VGLAVWAALRFADRQVAPLAELVSAARTIGSGNFAMRVAQNSGTDEIGLLARAFNRMTQQLEGQTQALVSANAQLEVRRA FIEAVLESITAGIVSIGRDGAIQLINSSAQRLLLDTDAASPIGRALSDVSPVFAQLVASGQPNNVIQHPLGGDLRTLAVR VVEDNNGHVITFEDITRQLLDQRRAAWSDVARRIAHEIKNPLTPIQLATERLKRRYGRQIENDPELFEELTSTIIRQVGD LRKMVDEFSSFARLPKPVFRAEDASDLVRQSLFLQEVAHTAIDFSFACDAPSMPIQCDRHQFAQVMTNVLKNAVEAIEAK AKTEDVDYRGRIAVTLAGDHDTVTVSVTDNGIGLPAERERILEPYMTTREKGTGLGLAIVHKIVEEHGGEMAFTAEPGGG TRVTMRFARDPLATSAHHAEQD >Mature_742_residues MERTPSVPVRRLPRWWRRVLVSLRRANVFLLLEIAASAVLALMLAVSWLTLTSSSAEGQILPSRLTSSLLIGTLVPAMAL IILVGRRLAIRRAAQSVLGSSGRLHVRLVWLFSLIAAIPTLLVVVFASFLFQSGVEFWFSDNSRGMLENANKLARGYYED KLRDVGNETVAMAGDIRDYLDQAAITSTEFAEGYSFQVLSRQLNESAILERAPDGSLRTAAIVDPEKSDRRQRVTPQDLK RLDAGESVVVSASAQRIEAVTPVDKRRGIYLYAARTSDALALEQWERAQTVLKAYDMLTTRARALQLRFNLALFGVSLAL VGLAVWAALRFADRQVAPLAELVSAARTIGSGNFAMRVAQNSGTDEIGLLARAFNRMTQQLEGQTQALVSANAQLEVRRA FIEAVLESITAGIVSIGRDGAIQLINSSAQRLLLDTDAASPIGRALSDVSPVFAQLVASGQPNNVIQHPLGGDLRTLAVR VVEDNNGHVITFEDITRQLLDQRRAAWSDVARRIAHEIKNPLTPIQLATERLKRRYGRQIENDPELFEELTSTIIRQVGD LRKMVDEFSSFARLPKPVFRAEDASDLVRQSLFLQEVAHTAIDFSFACDAPSMPIQCDRHQFAQVMTNVLKNAVEAIEAK AKTEDVDYRGRIAVTLAGDHDTVTVSVTDNGIGLPAERERILEPYMTTREKGTGLGLAIVHKIVEEHGGEMAFTAEPGGG TRVTMRFARDPLATSAHHAEQD
Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]
COG id: COG5000
COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=408, Percent_Identity=26.9607843137255, Blast_Score=121, Evalue=2e-28, Organism=Escherichia coli, GI1790436, Length=239, Percent_Identity=30.9623430962343, Blast_Score=103, Evalue=3e-23, Organism=Escherichia coli, GI1790300, Length=339, Percent_Identity=28.023598820059, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1790346, Length=219, Percent_Identity=27.8538812785388, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI1790567, Length=344, Percent_Identity=25.8720930232558, Blast_Score=74, Evalue=5e-14, Organism=Escherichia coli, GI145693157, Length=228, Percent_Identity=23.6842105263158, Blast_Score=67, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR017232 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 81597; Mature: 81597
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERTPSVPVRRLPRWWRRVLVSLRRANVFLLLEIAASAVLALMLAVSWLTLTSSSAEGQI CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC LPSRLTSSLLIGTLVPAMALIILVGRRLAIRRAAQSVLGSSGRLHVRLVWLFSLIAAIPT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH LLVVVFASFLFQSGVEFWFSDNSRGMLENANKLARGYYEDKLRDVGNETVAMAGDIRDYL HHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHH DQAAITSTEFAEGYSFQVLSRQLNESAILERAPDGSLRTAAIVDPEKSDRRQRVTPQDLK HHHHCCCHHHHCCCHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCCCCHHCCCCHHHHH RLDAGESVVVSASAQRIEAVTPVDKRRGIYLYAARTSDALALEQWERAQTVLKAYDMLTT HCCCCCCEEEECCHHHHHHCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH RARALQLRFNLALFGVSLALVGLAVWAALRFADRQVAPLAELVSAARTIGSGNFAMRVAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEC NSGTDEIGLLARAFNRMTQQLEGQTQALVSANAQLEVRRAFIEAVLESITAGIVSIGRDG CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC AIQLINSSAQRLLLDTDAASPIGRALSDVSPVFAQLVASGQPNNVIQHPLGGDLRTLAVR HHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEEE VVEDNNGHVITFEDITRQLLDQRRAAWSDVARRIAHEIKNPLTPIQLATERLKRRYGRQI EEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC ENDPELFEELTSTIIRQVGDLRKMVDEFSSFARLPKPVFRAEDASDLVRQSLFLQEVAHT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHH AIDFSFACDAPSMPIQCDRHQFAQVMTNVLKNAVEAIEAKAKTEDVDYRGRIAVTLAGDH HHCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC DTVTVSVTDNGIGLPAERERILEPYMTTREKGTGLGLAIVHKIVEEHGGEMAFTAEPGGG CEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC TRVTMRFARDPLATSAHHAEQD CEEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure MERTPSVPVRRLPRWWRRVLVSLRRANVFLLLEIAASAVLALMLAVSWLTLTSSSAEGQI CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC LPSRLTSSLLIGTLVPAMALIILVGRRLAIRRAAQSVLGSSGRLHVRLVWLFSLIAAIPT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH LLVVVFASFLFQSGVEFWFSDNSRGMLENANKLARGYYEDKLRDVGNETVAMAGDIRDYL HHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHH DQAAITSTEFAEGYSFQVLSRQLNESAILERAPDGSLRTAAIVDPEKSDRRQRVTPQDLK HHHHCCCHHHHCCCHHHHHHHHHCHHHHHHCCCCCCCCEEEEECCCCCCHHCCCCHHHHH RLDAGESVVVSASAQRIEAVTPVDKRRGIYLYAARTSDALALEQWERAQTVLKAYDMLTT HCCCCCCEEEECCHHHHHHCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH RARALQLRFNLALFGVSLALVGLAVWAALRFADRQVAPLAELVSAARTIGSGNFAMRVAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEC NSGTDEIGLLARAFNRMTQQLEGQTQALVSANAQLEVRRAFIEAVLESITAGIVSIGRDG CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC AIQLINSSAQRLLLDTDAASPIGRALSDVSPVFAQLVASGQPNNVIQHPLGGDLRTLAVR HHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEEE VVEDNNGHVITFEDITRQLLDQRRAAWSDVARRIAHEIKNPLTPIQLATERLKRRYGRQI EEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC ENDPELFEELTSTIIRQVGDLRKMVDEFSSFARLPKPVFRAEDASDLVRQSLFLQEVAHT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHH AIDFSFACDAPSMPIQCDRHQFAQVMTNVLKNAVEAIEAKAKTEDVDYRGRIAVTLAGDH HHCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC DTVTVSVTDNGIGLPAERERILEPYMTTREKGTGLGLAIVHKIVEEHGGEMAFTAEPGGG CEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC TRVTMRFARDPLATSAHHAEQD CEEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1661370 [H]