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The map label for this gene is xerC [H]

Identifier: 87199919

GI number: 87199919

Start: 2015288

End: 2016169

Strand: Direct

Name: xerC [H]

Synonym: Saro_1902

Alternate gene names: 87199919

Gene position: 2015288-2016169 (Clockwise)

Preceding gene: 87199918

Following gene: 87199920

Centisome position: 56.58

GC content: 66.44

Gene sequence:

>882_bases
GTGCGTCGCACGGTCGAACCCGCCGTCGAGAACTTCCTGGCGATGCTGGCGGCGCAACGCGGCGCGGCGGCCAATACGCT
CGCGGCATACCGGCGCGACCTGGCGGGCGCAGCCGAGGTGATCGGACCGTTGGCAACGGCAGGAAGGGAGGACCTCGCAC
GCCTTGCGATCGCTTGGTCCGATCTTGCGGCTTCGTCGCTGGCCCGCAAGTCTTCGGCGTTACGCCAGTTCTACGGCTTT
CTCGTCGACGAAGGGATGCGCGAGGAAGACCCATCGTCGGCGCTTCCACGCCCCAAGACGCGGCGCCCCCTGCCGCGTCT
GCTCGACCATGGGCAAGTTGAGGCGCTTTTTCGCACCGCCGAGGAAGATGCACGGTCAGGTACGCCTGAAGCAGCCCGGA
TGCTTGCCTTGCTCGAATTGCTGTACGGATCCGGCCTGCGCGCGACCGAGCTTGTCTCGCTTCCGCTTGCGGCGATTCCA
CGCGACGCACCGCTCCTGACGATCACCGGCAAGGGCGGTGTGCAGCGCATGGTGCCCGTTTCGGCACGGGCGACGCGCGC
TCTTGCCGATTGGCTCGTCGCGAGAGGGAAGGGCGGACGCTTCGTGTTCCCCAGTCCGCGTGGGGGACATCTTTCGCGGG
TGAGGCTATTCCAGTTGCTCCGTGACCTTGCCCTTCGCGCAGGACTGGATCCCGAGAAAGTCAGCCCGCACGTTCTGCGG
CACGCCTTTGCCACCCACCTTCTTGAAGGCGGCGCAGATCTGCGCGTCCTCCAGACGCTACTCGGCCATGCCGATATCGC
AACGACCCAGATCTATACCCACGTCGACGCCGCGAGGCTGGTCACGCTGGTGAACGAGCGCCACCCGCTTGCCCGCAGTT
GA

Upstream 100 bases:

>100_bases
CCCGCTGCACCTATATCACATCGTGTCCGCGCTCCATCGCGTCGGTCTCGACGGAGAGGCGAGAATGATCGCGGCCGAAG
CGGTCGCCCGCGTCTGAACT

Downstream 100 bases:

>100_bases
CCAAACCCGCGACCGCGCCTAGCGGAATGCCCATGATTTCCTATCTCGAGTTCGAAAAGCCGGTTGCCGCGCTCGAAGCC
CGCATCGCCGAACTGCGCGA

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MRRTVEPAVENFLAMLAAQRGAAANTLAAYRRDLAGAAEVIGPLATAGREDLARLAIAWSDLAASSLARKSSALRQFYGF
LVDEGMREEDPSSALPRPKTRRPLPRLLDHGQVEALFRTAEEDARSGTPEAARMLALLELLYGSGLRATELVSLPLAAIP
RDAPLLTITGKGGVQRMVPVSARATRALADWLVARGKGGRFVFPSPRGGHLSRVRLFQLLRDLALRAGLDPEKVSPHVLR
HAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAARLVTLVNERHPLARS

Sequences:

>Translated_293_residues
MRRTVEPAVENFLAMLAAQRGAAANTLAAYRRDLAGAAEVIGPLATAGREDLARLAIAWSDLAASSLARKSSALRQFYGF
LVDEGMREEDPSSALPRPKTRRPLPRLLDHGQVEALFRTAEEDARSGTPEAARMLALLELLYGSGLRATELVSLPLAAIP
RDAPLLTITGKGGVQRMVPVSARATRALADWLVARGKGGRFVFPSPRGGHLSRVRLFQLLRDLALRAGLDPEKVSPHVLR
HAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAARLVTLVNERHPLARS
>Mature_293_residues
MRRTVEPAVENFLAMLAAQRGAAANTLAAYRRDLAGAAEVIGPLATAGREDLARLAIAWSDLAASSLARKSSALRQFYGF
LVDEGMREEDPSSALPRPKTRRPLPRLLDHGQVEALFRTAEEDARSGTPEAARMLALLELLYGSGLRATELVSLPLAAIP
RDAPLLTITGKGGVQRMVPVSARATRALADWLVARGKGGRFVFPSPRGGHLSRVRLFQLLRDLALRAGLDPEKVSPHVLR
HAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAARLVTLVNERHPLARS

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=295, Percent_Identity=41.6949152542373, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1790244, Length=297, Percent_Identity=32.6599326599327, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1790767, Length=180, Percent_Identity=31.6666666666667, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790768, Length=169, Percent_Identity=33.1360946745562, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 31681; Mature: 31681

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: PS00334 MYB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTVEPAVENFLAMLAAQRGAAANTLAAYRRDLAGAAEVIGPLATAGREDLARLAIAWS
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
DLAASSLARKSSALRQFYGFLVDEGMREEDPSSALPRPKTRRPLPRLLDHGQVEALFRTA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHH
EEDARSGTPEAARMLALLELLYGSGLRATELVSLPLAAIPRDAPLLTITGKGGVQRMVPV
HHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHCCC
SARATRALADWLVARGKGGRFVFPSPRGGHLSRVRLFQLLRDLALRAGLDPEKVSPHVLR
HHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHH
HAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAARLVTLVNERHPLARS
HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRRTVEPAVENFLAMLAAQRGAAANTLAAYRRDLAGAAEVIGPLATAGREDLARLAIAWS
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
DLAASSLARKSSALRQFYGFLVDEGMREEDPSSALPRPKTRRPLPRLLDHGQVEALFRTA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHH
EEDARSGTPEAARMLALLELLYGSGLRATELVSLPLAAIPRDAPLLTITGKGGVQRMVPV
HHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHCCC
SARATRALADWLVARGKGGRFVFPSPRGGHLSRVRLFQLLRDLALRAGLDPEKVSPHVLR
HHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHH
HAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAARLVTLVNERHPLARS
HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA