| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199918
Identifier: 87199918
GI number: 87199918
Start: 2013392
End: 2015284
Strand: Direct
Name: 87199918
Synonym: Saro_1901
Alternate gene names: NA
Gene position: 2013392-2015284 (Clockwise)
Preceding gene: 87199915
Following gene: 87199919
Centisome position: 56.53
GC content: 65.61
Gene sequence:
>1893_bases ATGAAGCTGCGCATTCCGCTCCTTTCGGGTGCAGCAGCTCTGGTCGTGGTGTCGGGCACGCTGCTTGCCCAGGAATCGCT CCTTCCGCCGGGTTTCGACAGTCCCGCCACGCCTGCCCGGCCTGCGCAGCAGCGCTCCACGGCGCCCGCCGCCCCGCGAC TTGCCACGCCTGCAGCACGGCCCAGCGCGGCGTCGGCTCCTTCTTCGCCGGCCGCCACTTCGAGCCCGGTCGTACAGCCG ATCCCGGTCTCTTCAGCTCCGCCTCCGGTCCAGTCCCCGCTAGGGGTAAGCGATCAGGCCCTGCTGGATTCGCTCGATCC GGCGCTTCTTGCCAAACTGATCGAATCCGCCCGCCCGAAGTACGACATCCCTCCCTCCGGGCAGCGCAGCCTCGATATCG TCGGTGTCATCGACGCAAGCGACGGCGGCCTGCCCGCCGGCTCGACGCATTATCTCAACGGCCCGTTCGTGGAAGGTGTC ATCAACAAGATGCACGGGCGGTTCGTTTCGCGCTGGGGGCACATCCTTGCGCGGCGTGCAGTTGCCAGCAGGCTTGCCAC GCCCGTTGGAATGAATGGCGCCGACTGGGCGGCAATCCGGGCCCAGCTCTTGCTGCGCATGGGCGAGGCTGACGTTGCGC GCGCGATGGTGCAATCCGTGGACAGCGGCAATTTCACCCGCAGTCTCGAAGACGCCGCGATGGCAAGCTTCCTTGCCACC GCCGATCCCGTCGGCTTGTGTCCGATTACCGCCCTTACCGCTGCTAGCCGCCCCGGGTGGGACTGGGACCTTGTTCGCGC CATCTGTTCGGCATTCACAGACGAAGGCTCCCCGGCGATGGCGCAGCTTGATCGCGCGATGCGGCGCGGCGCCGGCAGCA AGATCGACATTCTCCTTGCCCAGAAGTTCGCTGGTGCGGCCACCAATGCTCGGCGAGCGGTCAAGATCGAATGGGACGAC GTCGAAGCGCTGACGCCCTGGAGCATCGGCATGTCCTTCGCGACCGGGCTTGAGCCTCCGGAAGCGCTGAGGGCCAAGGC CGGAATCGGCTATGTGCTGCTTGCCGCCCGCGCCCCGATGCTGCCCATTTCGTCCCGCGCAGCGGGAGCCGACGAAGCCG CGGCCCGAGGCGTGATGTCGAGCGAGGCGATGATCGACCTCTATTCGCAGATCTACGCCCTGCGCGAGGATGACGGCGGC AGTTCACAAGCCGACGAATGGAGCCGCCGCGCCGAAACGCTGCGGACGGCCTACGTCGCGGAGGCAGCATCAGACCGGCT CGATGCGATCCGCTCGTTGTGGGGGGACAGCAGCGACCCGAACAAGGCTTATGCAGGACTTGTGCTCACTTCGCATGCTG CAGCCCGCATTGCGCCCGAAGAGGGGCTTTCCGACAGTGCCGAAGCACTGATCGCGGCAATGCTTGCAGCCGGATTGGAT CGCAATGCCCTGAAATGGGCGCCGTACCTTCCGGTTGGAAGCGAAGGGTGGGGACTTCTGGTCCTCGCCAATCCGGGCCG GACAAATCGCGTTGGCACCGAAGGCCTCGATGCATTCGCCGGCGAGGACGATTCCGAGGGTACGTTGCGCAGCCGTTTTC TCGTGGCAGGGCTTATGGGACTGGAGCGGGTCGACGATGCCGCTGCCCGCGATTTCGCAAAAAAGCTTGGTGTCGATTTC AACCGACAGACGCGATGGACCCGCGCCATCGAAAGTGCGGCATCGTCGAACAATCCGGCACTCGTGGCGTTGCTCGCAGC ATTCGGCATGCAGGGAGATCGCTGGGACAAGATGACCCCGCTGCACCTATATCACATCGTGTCCGCGCTCCATCGCGTCG GTCTCGACGGAGAGGCGAGAATGATCGCGGCCGAAGCGGTCGCCCGCGTCTGA
Upstream 100 bases:
>100_bases CACTCCTGCTGGTTGCTATTCTCTTGTTGGCATGGATGAAGGGTGGGACGCAGCCGATGCGCTGGATCGAACAACCGGTC GGTAACGGAAGCCCCAGCCA
Downstream 100 bases:
>100_bases ACTGTGCGTCGCACGGTCGAACCCGCCGTCGAGAACTTCCTGGCGATGCTGGCGGCGCAACGCGGCGCGGCGGCCAATAC GCTCGCGGCATACCGGCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 630; Mature: 630
Protein sequence:
>630_residues MKLRIPLLSGAAALVVVSGTLLAQESLLPPGFDSPATPARPAQQRSTAPAAPRLATPAARPSAASAPSSPAATSSPVVQP IPVSSAPPPVQSPLGVSDQALLDSLDPALLAKLIESARPKYDIPPSGQRSLDIVGVIDASDGGLPAGSTHYLNGPFVEGV INKMHGRFVSRWGHILARRAVASRLATPVGMNGADWAAIRAQLLLRMGEADVARAMVQSVDSGNFTRSLEDAAMASFLAT ADPVGLCPITALTAASRPGWDWDLVRAICSAFTDEGSPAMAQLDRAMRRGAGSKIDILLAQKFAGAATNARRAVKIEWDD VEALTPWSIGMSFATGLEPPEALRAKAGIGYVLLAARAPMLPISSRAAGADEAAARGVMSSEAMIDLYSQIYALREDDGG SSQADEWSRRAETLRTAYVAEAASDRLDAIRSLWGDSSDPNKAYAGLVLTSHAAARIAPEEGLSDSAEALIAAMLAAGLD RNALKWAPYLPVGSEGWGLLVLANPGRTNRVGTEGLDAFAGEDDSEGTLRSRFLVAGLMGLERVDDAAARDFAKKLGVDF NRQTRWTRAIESAASSNNPALVALLAAFGMQGDRWDKMTPLHLYHIVSALHRVGLDGEARMIAAEAVARV
Sequences:
>Translated_630_residues MKLRIPLLSGAAALVVVSGTLLAQESLLPPGFDSPATPARPAQQRSTAPAAPRLATPAARPSAASAPSSPAATSSPVVQP IPVSSAPPPVQSPLGVSDQALLDSLDPALLAKLIESARPKYDIPPSGQRSLDIVGVIDASDGGLPAGSTHYLNGPFVEGV INKMHGRFVSRWGHILARRAVASRLATPVGMNGADWAAIRAQLLLRMGEADVARAMVQSVDSGNFTRSLEDAAMASFLAT ADPVGLCPITALTAASRPGWDWDLVRAICSAFTDEGSPAMAQLDRAMRRGAGSKIDILLAQKFAGAATNARRAVKIEWDD VEALTPWSIGMSFATGLEPPEALRAKAGIGYVLLAARAPMLPISSRAAGADEAAARGVMSSEAMIDLYSQIYALREDDGG SSQADEWSRRAETLRTAYVAEAASDRLDAIRSLWGDSSDPNKAYAGLVLTSHAAARIAPEEGLSDSAEALIAAMLAAGLD RNALKWAPYLPVGSEGWGLLVLANPGRTNRVGTEGLDAFAGEDDSEGTLRSRFLVAGLMGLERVDDAAARDFAKKLGVDF NRQTRWTRAIESAASSNNPALVALLAAFGMQGDRWDKMTPLHLYHIVSALHRVGLDGEARMIAAEAVARV >Mature_630_residues MKLRIPLLSGAAALVVVSGTLLAQESLLPPGFDSPATPARPAQQRSTAPAAPRLATPAARPSAASAPSSPAATSSPVVQP IPVSSAPPPVQSPLGVSDQALLDSLDPALLAKLIESARPKYDIPPSGQRSLDIVGVIDASDGGLPAGSTHYLNGPFVEGV INKMHGRFVSRWGHILARRAVASRLATPVGMNGADWAAIRAQLLLRMGEADVARAMVQSVDSGNFTRSLEDAAMASFLAT ADPVGLCPITALTAASRPGWDWDLVRAICSAFTDEGSPAMAQLDRAMRRGAGSKIDILLAQKFAGAATNARRAVKIEWDD VEALTPWSIGMSFATGLEPPEALRAKAGIGYVLLAARAPMLPISSRAAGADEAAARGVMSSEAMIDLYSQIYALREDDGG SSQADEWSRRAETLRTAYVAEAASDRLDAIRSLWGDSSDPNKAYAGLVLTSHAAARIAPEEGLSDSAEALIAAMLAAGLD RNALKWAPYLPVGSEGWGLLVLANPGRTNRVGTEGLDAFAGEDDSEGTLRSRFLVAGLMGLERVDDAAARDFAKKLGVDF NRQTRWTRAIESAASSNNPALVALLAAFGMQGDRWDKMTPLHLYHIVSALHRVGLDGEARMIAAEAVARV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66020; Mature: 66020
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLRIPLLSGAAALVVVSGTLLAQESLLPPGFDSPATPARPAQQRSTAPAAPRLATPAAR CEEEEEECCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC PSAASAPSSPAATSSPVVQPIPVSSAPPPVQSPLGVSDQALLDSLDPALLAKLIESARPK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCC YDIPPSGQRSLDIVGVIDASDGGLPAGSTHYLNGPFVEGVINKMHGRFVSRWGHILARRA CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VASRLATPVGMNGADWAAIRAQLLLRMGEADVARAMVQSVDSGNFTRSLEDAAMASFLAT HHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ADPVGLCPITALTAASRPGWDWDLVRAICSAFTDEGSPAMAQLDRAMRRGAGSKIDILLA CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEH QKFAGAATNARRAVKIEWDDVEALTPWSIGMSFATGLEPPEALRAKAGIGYVLLAARAPM HHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCCCC LPISSRAAGADEAAARGVMSSEAMIDLYSQIYALREDDGGSSQADEWSRRAETLRTAYVA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH EAASDRLDAIRSLWGDSSDPNKAYAGLVLTSHAAARIAPEEGLSDSAEALIAAMLAAGLD HHHHHHHHHHHHHHCCCCCCCHHHHHEEEECCHHHHCCCCCCCCHHHHHHHHHHHHHCCC RNALKWAPYLPVGSEGWGLLVLANPGRTNRVGTEGLDAFAGEDDSEGTLRSRFLVAGLMG CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHH LERVDDAAARDFAKKLGVDFNRQTRWTRAIESAASSNNPALVALLAAFGMQGDRWDKMTP HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCH LHLYHIVSALHRVGLDGEARMIAAEAVARV HHHHHHHHHHHHCCCCCCHHHHHHHHHHCC >Mature Secondary Structure MKLRIPLLSGAAALVVVSGTLLAQESLLPPGFDSPATPARPAQQRSTAPAAPRLATPAAR CEEEEEECCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC PSAASAPSSPAATSSPVVQPIPVSSAPPPVQSPLGVSDQALLDSLDPALLAKLIESARPK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCC YDIPPSGQRSLDIVGVIDASDGGLPAGSTHYLNGPFVEGVINKMHGRFVSRWGHILARRA CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VASRLATPVGMNGADWAAIRAQLLLRMGEADVARAMVQSVDSGNFTRSLEDAAMASFLAT HHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ADPVGLCPITALTAASRPGWDWDLVRAICSAFTDEGSPAMAQLDRAMRRGAGSKIDILLA CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEH QKFAGAATNARRAVKIEWDDVEALTPWSIGMSFATGLEPPEALRAKAGIGYVLLAARAPM HHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCCCC LPISSRAAGADEAAARGVMSSEAMIDLYSQIYALREDDGGSSQADEWSRRAETLRTAYVA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH EAASDRLDAIRSLWGDSSDPNKAYAGLVLTSHAAARIAPEEGLSDSAEALIAAMLAAGLD HHHHHHHHHHHHHHCCCCCCCHHHHHEEEECCHHHHCCCCCCCCHHHHHHHHHHHHHCCC RNALKWAPYLPVGSEGWGLLVLANPGRTNRVGTEGLDAFAGEDDSEGTLRSRFLVAGLMG CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHH LERVDDAAARDFAKKLGVDFNRQTRWTRAIESAASSNNPALVALLAAFGMQGDRWDKMTP HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCH LHLYHIVSALHRVGLDGEARMIAAEAVARV HHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA