| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199899
Identifier: 87199899
GI number: 87199899
Start: 1987056
End: 1988561
Strand: Direct
Name: 87199899
Synonym: Saro_1882
Alternate gene names: NA
Gene position: 1987056-1988561 (Clockwise)
Preceding gene: 87199898
Following gene: 87199900
Centisome position: 55.79
GC content: 64.14
Gene sequence:
>1506_bases ATGGCGACGTCGGACCGGACGATCCGTTCTGTGGCAATTGTCGGCGGCGGCACGGCGGGCTGGATGACGGCGGCTGCACT GGCGCAGGCGCTTAGGCACAACTGCCGGATAACGCTGGTTGAATCGGACGACATCGGCACCGTGGGCGTCGGCGAGGCGA CGATCCCTCCGATCCGCACCTTCAACGAAACCCTGCAGATCGACGAGCGCGAGTTCGTCCGCAAGACGCAAGGGACGTTC AAGCTCGGCATCGAGTTCGTCGACTGGGCCCGGGTCGGAAACCGCTATTTTCACCCCTTCGGCCCGCACGGGCGTGCCTT CGACATGGTGAACCTGCACCACTATTGGCTGCGCGCCAGGGCGGAGGGGGAGACGGCACCGCTGGACGAGCACTCGATGG CTTGGGCGCTGGCCAGGGAAAATCGCTTTGCGCCACCAATGCCCGACCAGCGCAACGTGTTGTCCACGTTCGATTTTGCC TATCACTTCGATGCCGGCCTCTATGCCCGTTTCCTGCGCGAATATGCCGAGGCGAGGGGTGTCGTCCGCATCGAGGGCAA AATCGGCAGCGTTCAGCAGAATGGCGAAACCGGCTTCGTCACTGGCGTCACGCTGGAAGACGGCCGCGCGGTCGAGGCCG AGCTTTTCGTCGATTGCTCGGGCTTCCGCGGCCTCCTGATCGAGGGGGCGCTGCAGGCGGGGTACGAGGATTGGACCCAT TGGCTGCCATGCGACCGCGCGATGGCGGTGCCTTGCGAAAATGCCTATCCGCTGACGCCCTACACCCGTTCGACCGCCCG CGAGGCGGGGTGGCAGTGGCGCATTCCGCTGCAGCATCGCACCGGCAACGGCTACGTGTTCTGCAGCCAGTTCCTGTCGG AGGACGAAGCGGCGGAAAAGCTGCTGTCGCGCCTCGACGGCAAGGCGCTGGCCGATCCGCGTCCGCTGCGGTTCGTCACG GGGCGGCGCAAGAAGTTCTGGGACAGGAACGTGATCGCCATCGGCCTGTCGAGCGGCTTTATGGAGCCGCTGGAATCGAC GTCTATTCACTTGATCCAGGCTGGAATTTCCAAGCTTCTCGCGCTTTTCCCCGATCGCGGCTTCGACCCTATCGTGATCG ACGAGTACAACCGCATCGCGGTGAGCGAGTTCGAGCGCATCCGCGATTTCATCATCCTGCACTACAAGCTCACCGAGCGC GACGATGCGGAGTTGTGGCGCTATTGCGCGGCGATGGACATCCCGGACACGCTCAAGACGAAGATCGAGCATTTCCGAAG CTTTGGCAGGCTGGTTCAGCGCGATGCAGACCTGTTCGGGCCGCCATCGTGGCTCGCGGTGCACATCGGTCAGCTCAATT TTCCCGAACGGACCGATCCACTGGCGGACTATCGCGGCATCGACGGGCGCGAATGGCTGGCGAAGCTGCGGGCGGCGATG CACCACGCGGCGATGCAGCAACCCACGCACGAGCAGTTCATCGCGGCGAACTGCGCGGCGGCATGA
Upstream 100 bases:
>100_bases ATGACCGGGGGCGGAACGCGACTTGCGTTTCCGCCCCCGCGTTCCAGTATCGCCGGAAGAGCGATAGTCCCATAGCTGGG ACGGGCAGGAGAGATATCGG
Downstream 100 bases:
>100_bases GCACCGCCGATGCGCATCTGCGGCGGGCTGTCGCGCTGCGCGATTCCCAGGACCTCGCCGGGGCGCTCGATGCCATACGA GAGGCAGCGAGTGCCGCGCC
Product: tryptophan halogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 501; Mature: 500
Protein sequence:
>501_residues MATSDRTIRSVAIVGGGTAGWMTAAALAQALRHNCRITLVESDDIGTVGVGEATIPPIRTFNETLQIDEREFVRKTQGTF KLGIEFVDWARVGNRYFHPFGPHGRAFDMVNLHHYWLRARAEGETAPLDEHSMAWALARENRFAPPMPDQRNVLSTFDFA YHFDAGLYARFLREYAEARGVVRIEGKIGSVQQNGETGFVTGVTLEDGRAVEAELFVDCSGFRGLLIEGALQAGYEDWTH WLPCDRAMAVPCENAYPLTPYTRSTAREAGWQWRIPLQHRTGNGYVFCSQFLSEDEAAEKLLSRLDGKALADPRPLRFVT GRRKKFWDRNVIAIGLSSGFMEPLESTSIHLIQAGISKLLALFPDRGFDPIVIDEYNRIAVSEFERIRDFIILHYKLTER DDAELWRYCAAMDIPDTLKTKIEHFRSFGRLVQRDADLFGPPSWLAVHIGQLNFPERTDPLADYRGIDGREWLAKLRAAM HHAAMQQPTHEQFIAANCAAA
Sequences:
>Translated_501_residues MATSDRTIRSVAIVGGGTAGWMTAAALAQALRHNCRITLVESDDIGTVGVGEATIPPIRTFNETLQIDEREFVRKTQGTF KLGIEFVDWARVGNRYFHPFGPHGRAFDMVNLHHYWLRARAEGETAPLDEHSMAWALARENRFAPPMPDQRNVLSTFDFA YHFDAGLYARFLREYAEARGVVRIEGKIGSVQQNGETGFVTGVTLEDGRAVEAELFVDCSGFRGLLIEGALQAGYEDWTH WLPCDRAMAVPCENAYPLTPYTRSTAREAGWQWRIPLQHRTGNGYVFCSQFLSEDEAAEKLLSRLDGKALADPRPLRFVT GRRKKFWDRNVIAIGLSSGFMEPLESTSIHLIQAGISKLLALFPDRGFDPIVIDEYNRIAVSEFERIRDFIILHYKLTER DDAELWRYCAAMDIPDTLKTKIEHFRSFGRLVQRDADLFGPPSWLAVHIGQLNFPERTDPLADYRGIDGREWLAKLRAAM HHAAMQQPTHEQFIAANCAAA >Mature_500_residues ATSDRTIRSVAIVGGGTAGWMTAAALAQALRHNCRITLVESDDIGTVGVGEATIPPIRTFNETLQIDEREFVRKTQGTFK LGIEFVDWARVGNRYFHPFGPHGRAFDMVNLHHYWLRARAEGETAPLDEHSMAWALARENRFAPPMPDQRNVLSTFDFAY HFDAGLYARFLREYAEARGVVRIEGKIGSVQQNGETGFVTGVTLEDGRAVEAELFVDCSGFRGLLIEGALQAGYEDWTHW LPCDRAMAVPCENAYPLTPYTRSTAREAGWQWRIPLQHRTGNGYVFCSQFLSEDEAAEKLLSRLDGKALADPRPLRFVTG RRKKFWDRNVIAIGLSSGFMEPLESTSIHLIQAGISKLLALFPDRGFDPIVIDEYNRIAVSEFERIRDFIILHYKLTERD DAELWRYCAAMDIPDTLKTKIEHFRSFGRLVQRDADLFGPPSWLAVHIGQLNFPERTDPLADYRGIDGREWLAKLRAAMH HAAMQQPTHEQFIAANCAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006905 [H]
Pfam domain/function: PF04820 Trp_halogenase [H]
EC number: NA
Molecular weight: Translated: 56592; Mature: 56461
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATSDRTIRSVAIVGGGTAGWMTAAALAQALRHNCRITLVESDDIGTVGVGEATIPPIRT CCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCEECCCCCCCCCHHH FNETLQIDEREFVRKTQGTFKLGIEFVDWARVGNRYFHPFGPHGRAFDMVNLHHYWLRAR HHHHHCCCHHHHHHHHCCCEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHEEE AEGETAPLDEHSMAWALARENRFAPPMPDQRNVLSTFDFAYHFDAGLYARFLREYAEARG CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC VVRIEGKIGSVQQNGETGFVTGVTLEDGRAVEAELFVDCSGFRGLLIEGALQAGYEDWTH EEEEECCCCCEEECCCCEEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHCCHHHHHH WLPCDRAMAVPCENAYPLTPYTRSTAREAGWQWRIPLQHRTGNGYVFCSQFLSEDEAAEK CCCCCCEEECCCCCCCCCCCCCHHHHHHCCCEEEEEEEEECCCCEEEEHHHHCCHHHHHH LLSRLDGKALADPRPLRFVTGRRKKFWDRNVIAIGLSSGFMEPLESTSIHLIQAGISKLL HHHHCCCCCCCCCCCEEECCCCCHHHCCCCEEEEECCCCCCCHHHCCHHHHHHHHHHHHH ALFPDRGFDPIVIDEYNRIAVSEFERIRDFIILHYKLTERDDAELWRYCAAMDIPDTLKT HHCCCCCCCCEEECCCCCHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHCCCCHHHHH KIEHFRSFGRLVQRDADLFGPPSWLAVHIGQLNFPERTDPLADYRGIDGREWLAKLRAAM HHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH HHAAMQQPTHEQFIAANCAAA HHHHHCCCCHHHHHHHHCCCC >Mature Secondary Structure ATSDRTIRSVAIVGGGTAGWMTAAALAQALRHNCRITLVESDDIGTVGVGEATIPPIRT CCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCEECCCCCCCCCHHH FNETLQIDEREFVRKTQGTFKLGIEFVDWARVGNRYFHPFGPHGRAFDMVNLHHYWLRAR HHHHHCCCHHHHHHHHCCCEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHEEE AEGETAPLDEHSMAWALARENRFAPPMPDQRNVLSTFDFAYHFDAGLYARFLREYAEARG CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC VVRIEGKIGSVQQNGETGFVTGVTLEDGRAVEAELFVDCSGFRGLLIEGALQAGYEDWTH EEEEECCCCCEEECCCCEEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHCCHHHHHH WLPCDRAMAVPCENAYPLTPYTRSTAREAGWQWRIPLQHRTGNGYVFCSQFLSEDEAAEK CCCCCCEEECCCCCCCCCCCCCHHHHHHCCCEEEEEEEEECCCCEEEEHHHHCCHHHHHH LLSRLDGKALADPRPLRFVTGRRKKFWDRNVIAIGLSSGFMEPLESTSIHLIQAGISKLL HHHHCCCCCCCCCCCEEECCCCCHHHCCCCEEEEECCCCCCCHHHCCHHHHHHHHHHHHH ALFPDRGFDPIVIDEYNRIAVSEFERIRDFIILHYKLTERDDAELWRYCAAMDIPDTLKT HHCCCCCCCCEEECCCCCHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHCCCCHHHHH KIEHFRSFGRLVQRDADLFGPPSWLAVHIGQLNFPERTDPLADYRGIDGREWLAKLRAAM HHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH HHAAMQQPTHEQFIAANCAAA HHHHHCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]