Click here to switch to the map view.

The map label for this gene is 87199900

Identifier: 87199900

GI number: 87199900

Start: 1988558

End: 1989931

Strand: Direct

Name: 87199900

Synonym: Saro_1883

Alternate gene names: NA

Gene position: 1988558-1989931 (Clockwise)

Preceding gene: 87199899

Following gene: 87199901

Centisome position: 55.83

GC content: 69.07

Gene sequence:

>1374_bases
ATGAGCACCGCCGATGCGCATCTGCGGCGGGCTGTCGCGCTGCGCGATTCCCAGGACCTCGCCGGGGCGCTCGATGCCAT
ACGAGAGGCAGCGAGTGCCGCGCCAGGGGACGCCAATGTCGCTTTAGGTGTCGCTCAGGTCACATTCGAAGCCGGGCTCG
ATGCGGCCGATCTCTATGGGCGGGCGGCAGAACTTGCCCCGGACCGCCTCGACCTCCAGCGCAGCCGCGCCAGCGCGCTG
GCGGCAGAGGGACGGCAGCCGGAGGCCGAGGAGCTGCTGGAAGCACTGCTGGCAAGGCATCCCGCATGGATCGACGGCCA
TCGCTGCCTGTGCGGCATGCGGGCGACTGCCGGCGAGGTCGATTTCGCGCGGAGCTTTCGGAGCGCCGTGGCGCGCGAGC
CCGAGAATTTCGGACTGCGCATGGCATGGTTCCACGTCCTTGCCACTGCTCGGCTTTGGGACGAGGCAAGAGCGGTCGTC
GACGAGGCCGAGGCCCTGCTGGGAGAGCGGCAGGCGTCGCTTCTGGGCAAGCTGTTCATTGCCAGCGAGAGCGGGGAAGA
GGCTGCAAACCCAAGCCTTTTCGACCGGGTGGAGCACGTGCAGGACCTCGGGCTCGACATCGCCCGGGTGCGGCATTTCC
TGCGCGGCGGCCAGATCGAGCGGGCGCGGGATCTGTGCGTGCGACACATGGGCCAGCCCACCATGCGCGCGTTCTGGCCC
TACGCCTCGCTCGCCTGGCGCCTCCTCGACGATCCGCGCGCGCAGTGGCTCGACGCAGGCATGCGCCATGTGCGCGCGTT
CGACCTGGACTTCCGCGCGGAGGAGCTCGCCGCGCTGGCGGAGACGCTGCGGCGGCTGCATACGATGCGACAGCCCTGGC
ACGAACAATCCGTGCGCGGGGGCACGCAGACCGAGAGGCCGTTGCTGCTGCGGATCGATCCGGTGATCGCCAGTGCCAGG
GCGCGGATCGAGGCCGCGGTGCGGCGATACATCGATGAATTGCCCGATCACGATCCCGCCCATCCATTGCTGGCGGCACC
CCGCAAAGGCCTCCTCTTTTCGGGGAGCTGGTCGGTCAGGCTGCGCCCCGGCGGCTTCCATTCGGTGCACACCCATCCGA
TGGGATGGCTCAGCTCGGCGCTTTACGTGACGGTGCCAGAGCGGGAACAGCGCGGCGCAGCGCCCGCCGGGCACCTGCGC
TTCGGTACGCCGCCGCCCGAACTGGCCCTGCCGCTGGAGGCCTACGGTGAGGTAGTGCCTGTGCCGGGGCGCCTGGCCCT
TTTCCCTTCGACCATGTGGCACGGCACCGTCCCCTTCGCGGATGGCGAACGGATGACCATAGCCTTCGACATCGTACCCA
ACCTGAAAGCCTGA

Upstream 100 bases:

>100_bases
ACGGGCGCGAATGGCTGGCGAAGCTGCGGGCGGCGATGCACCACGCGGCGATGCAGCAACCCACGCACGAGCAGTTCATC
GCGGCGAACTGCGCGGCGGC

Downstream 100 bases:

>100_bases
AATGCGACCCCTGTACCATTACGCGCCCGCCGCCAACTGGCTGAGCGACCCCAACGGCCTCGTGTGGCAGGATGGGGAGT
GGCACCTGTTCTACCAGTAC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: TPR Domain Protein; Tetratricopeptide Repeat Protein; TPR Repeat Protein; Flp Pilus Assembly Protein TadD; Tetratricopeptide Repeat-Containing Protein; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; Tetratricopeptide Repeat Domain Protein

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MSTADAHLRRAVALRDSQDLAGALDAIREAASAAPGDANVALGVAQVTFEAGLDAADLYGRAAELAPDRLDLQRSRASAL
AAEGRQPEAEELLEALLARHPAWIDGHRCLCGMRATAGEVDFARSFRSAVAREPENFGLRMAWFHVLATARLWDEARAVV
DEAEALLGERQASLLGKLFIASESGEEAANPSLFDRVEHVQDLGLDIARVRHFLRGGQIERARDLCVRHMGQPTMRAFWP
YASLAWRLLDDPRAQWLDAGMRHVRAFDLDFRAEELAALAETLRRLHTMRQPWHEQSVRGGTQTERPLLLRIDPVIASAR
ARIEAAVRRYIDELPDHDPAHPLLAAPRKGLLFSGSWSVRLRPGGFHSVHTHPMGWLSSALYVTVPEREQRGAAPAGHLR
FGTPPPELALPLEAYGEVVPVPGRLALFPSTMWHGTVPFADGERMTIAFDIVPNLKA

Sequences:

>Translated_457_residues
MSTADAHLRRAVALRDSQDLAGALDAIREAASAAPGDANVALGVAQVTFEAGLDAADLYGRAAELAPDRLDLQRSRASAL
AAEGRQPEAEELLEALLARHPAWIDGHRCLCGMRATAGEVDFARSFRSAVAREPENFGLRMAWFHVLATARLWDEARAVV
DEAEALLGERQASLLGKLFIASESGEEAANPSLFDRVEHVQDLGLDIARVRHFLRGGQIERARDLCVRHMGQPTMRAFWP
YASLAWRLLDDPRAQWLDAGMRHVRAFDLDFRAEELAALAETLRRLHTMRQPWHEQSVRGGTQTERPLLLRIDPVIASAR
ARIEAAVRRYIDELPDHDPAHPLLAAPRKGLLFSGSWSVRLRPGGFHSVHTHPMGWLSSALYVTVPEREQRGAAPAGHLR
FGTPPPELALPLEAYGEVVPVPGRLALFPSTMWHGTVPFADGERMTIAFDIVPNLKA
>Mature_456_residues
STADAHLRRAVALRDSQDLAGALDAIREAASAAPGDANVALGVAQVTFEAGLDAADLYGRAAELAPDRLDLQRSRASALA
AEGRQPEAEELLEALLARHPAWIDGHRCLCGMRATAGEVDFARSFRSAVAREPENFGLRMAWFHVLATARLWDEARAVVD
EAEALLGERQASLLGKLFIASESGEEAANPSLFDRVEHVQDLGLDIARVRHFLRGGQIERARDLCVRHMGQPTMRAFWPY
ASLAWRLLDDPRAQWLDAGMRHVRAFDLDFRAEELAALAETLRRLHTMRQPWHEQSVRGGTQTERPLLLRIDPVIASARA
RIEAAVRRYIDELPDHDPAHPLLAAPRKGLLFSGSWSVRLRPGGFHSVHTHPMGWLSSALYVTVPEREQRGAAPAGHLRF
GTPPPELALPLEAYGEVVPVPGRLALFPSTMWHGTVPFADGERMTIAFDIVPNLKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50357; Mature: 50226

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTADAHLRRAVALRDSQDLAGALDAIREAASAAPGDANVALGVAQVTFEAGLDAADLYG
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCHHHHHC
RAAELAPDRLDLQRSRASALAAEGRQPEAEELLEALLARHPAWIDGHRCLCGMRATAGEV
CHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHEECCCCCCCHH
DFARSFRSAVAREPENFGLRMAWFHVLATARLWDEARAVVDEAEALLGERQASLLGKLFI
HHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
ASESGEEAANPSLFDRVEHVQDLGLDIARVRHFLRGGQIERARDLCVRHMGQPTMRAFWP
ECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHCC
YASLAWRLLDDPRAQWLDAGMRHVRAFDLDFRAEELAALAETLRRLHTMRQPWHEQSVRG
HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCC
GTQTERPLLLRIDPVIASARARIEAAVRRYIDELPDHDPAHPLLAAPRKGLLFSGSWSVR
CCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEEEECCEEEE
LRPGGFHSVHTHPMGWLSSALYVTVPEREQRGAAPAGHLRFGTPPPELALPLEAYGEVVP
ECCCCCCCCCCCCHHHHCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCEEC
VPGRLALFPSTMWHGTVPFADGERMTIAFDIVPNLKA
CCCCEEECCCHHHCCCCCCCCCCEEEEEEEECCCCCC
>Mature Secondary Structure 
STADAHLRRAVALRDSQDLAGALDAIREAASAAPGDANVALGVAQVTFEAGLDAADLYG
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCHHHHHC
RAAELAPDRLDLQRSRASALAAEGRQPEAEELLEALLARHPAWIDGHRCLCGMRATAGEV
CHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHEECCCCCCCHH
DFARSFRSAVAREPENFGLRMAWFHVLATARLWDEARAVVDEAEALLGERQASLLGKLFI
HHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
ASESGEEAANPSLFDRVEHVQDLGLDIARVRHFLRGGQIERARDLCVRHMGQPTMRAFWP
ECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHCC
YASLAWRLLDDPRAQWLDAGMRHVRAFDLDFRAEELAALAETLRRLHTMRQPWHEQSVRG
HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCC
GTQTERPLLLRIDPVIASARARIEAAVRRYIDELPDHDPAHPLLAAPRKGLLFSGSWSVR
CCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEEEECCEEEE
LRPGGFHSVHTHPMGWLSSALYVTVPEREQRGAAPAGHLRFGTPPPELALPLEAYGEVVP
ECCCCCCCCCCCCHHHHCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCEEC
VPGRLALFPSTMWHGTVPFADGERMTIAFDIVPNLKA
CCCCEEECCCHHHCCCCCCCCCCEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA