| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is rafA [H]
Identifier: 87199895
GI number: 87199895
Start: 1979797
End: 1981896
Strand: Direct
Name: rafA [H]
Synonym: Saro_1878
Alternate gene names: 87199895
Gene position: 1979797-1981896 (Clockwise)
Preceding gene: 87199894
Following gene: 87199896
Centisome position: 55.59
GC content: 68.48
Gene sequence:
>2100_bases ATGGGCGAGGTATTCGCCTTGCACTCCGGGGACGGCAGTCTCGTCTGGGAAGCGGACGACGGCAGCGCGCCCGCGTGGCG GCACTTCGGCCCCCGGCTGACAGCCGACGGGATCCGGCCGATCCGGGACCAGCGCGCGCCTGCGTCATACTCGCTGGACG ACGACGTACCGTTCGCCGTCGCACCGGCGGCCGGGCTGGGCTGGTTCGGACCTTCGGCCATGTGCTTGCGGCGCGGCTCA GTCGCACTCGTGCCGGCAATGGCGGGGGCGTCCGTCGCCGGGGATGCCGGCTCCGTGCGCATCATCACGCGCGATCCGGT TGCGGGCGTGGAGCTTGAACAGGTGTTCGAAGCAGTTGGCGGTGCTTTCGTCTGCCGCAGCGTCGTGCGCAACATCGGCA GTGAAACGTTCGAGGTCGACTGGCTGTCGAGCGCGCTCCTCCCCATCGCGGGTTCCGCGCGCGAGATCGTGTCGTGGCGT GGACGCCACAACGCCGAACTGGTCGAATGCCGCGAGCCGATGCCGCAGCATTCGTGGGTGCGCGAAGGTCGGCGCGGGAT TTCCGGGCACGGCGGCCCTCCGGGCCTGTTCGTGCTCGACGAAGGCGCTACGTATCACGCGGGCACTGTCCGCGCGCTGC AGCTTGCGTGGTCTGGCGATGCGCGCATCGAGGTCGAGCGCGACGACGAGGGTTTCTGGACGTTGAACGCGGGCGCGGTG CTTCAACCTGGCGAGGCCAGCCTTGCGCCCGGCGAGAGCTGGCAGTCGCCCGACGCCATCGTGACGGTATCAACCTCCGG CCGGAACGGCGCGGCGCAGGCGTTTCACGATGCAGTCCGCGCGCGCATCCGCTGGCCGGACGGGGCCATGCGCCCACGGC CCGTGCACCTCAACTCGTGGGAAGCCTGCTATTTCGACCACGACGAGGAGCGCATCGTTGCCCTTGCGGAAGCGGCGGCA TCCGTGGGCGTGGAGCGGTTCATTCTCGACGATGGCTGGTTCCGGGGCCGCAACGACGACACGGCGGGACTGGGCGACTG GACAACCGATCCCGTCAAGTATCCGCACGGACTGCGCACCCTGGCAGACCGCGTCAATGCGCTGGGCATGGAGTTCGGGC TCTGGGTCGAACCGGAAATGATCAATCCCGATAGCGACCTCTATCGGGCGTATCCGGACTGGGCGCTTGCGCTTCCGGGG CGGAAACGACCGACTGCCCGGAACCAGCTCGTGCTTGACATGCGGCGACGGGACGTTCGCGACCACCTCTTCGGCTGCAT CGACGCGCTGCTGCGCGAATTGCCGATCACCTACCTCAAGTGGGACCACAACCGCGACCTCGCGCCTGCTGGCGGGGCGG CGCAGATGAGGGGGGCGTATGAACTGTTCGCGCGGGTCCGCGCAGCGCATCCCGCCGTGGAGATCGAGGCCTGTGCTGGC GGCGGCGGGCGCAACGATGCAGGTATGGCCGACTATTGCCATCGCTACTGGACCAGCGACAATATCGACGCGGCCAGTCG CATCGGTATCCAGCGCGGGTTCCTGTCGTTCCTCCCTCCCGAGGTGATGGGATCGCACATCGCCGCAAGCCCCGCCCATG CCACGGGGCGCAGGCATTCCCTGGGCTTCCGGGCTGCCATGGCGATGGCCGGTCATCTCGGCGTGGAAATGGACCCGCGC ACGCTGGGCGATGCAGAGCGCGCCGAACTGGCCGACTGGATCGCCTTTCACAAGCAATGGCGCGGATTGCTGCACCAGGG CACTGTCTGGCTGGGCGAGGGTGCGGATGCAGCGTTCTGGCAGGCGCAGGGGAATGCAGCGGAACTGCTGCTCTTCGTGA TCCGCGCGGACCCGCCGCTGGACCGTCGCCCGCAGCCTTTGCCACTGCCTTTCGCGGGCCAGGATGGAACATGGGACATC CGGCTTCTTCGTATCGCCGGGGGCGAGGGCGGGCATGCCGCGCATTCCGCTGCGCTGTTCGAGGCAATGAAGGCCGCCCC TCAGGCGTTCCCGGCTGACTGGCTCTCGGCCAACGGCCTGCCGCTCCCGCCCTGCAAGGCGGAGACGGTCACCATCTTCC ATCTGCGCAAACGCGCCTGA
Upstream 100 bases:
>100_bases TGATGTTTTGCGGCGCGTCGCTGGTGCTCGCGGGCTTCTCGGTGCTCTGGGTGCGCGAAGGACGAGCCGGCGCGATGCCG CAATCGGCGGTGCCGGCCTG
Downstream 100 bases:
>100_bases TCTGTCTTAAGCCAAATCTGTTTCAAGAAAGTCGGATATGTCCGTGGTCAATCCATCAGAACAATCGATTGCCTCGTTTG GCGCGACGCCGTGGCGTCCC
Product: glycoside hydrolase, clan GH-D
Products: NA
Alternate protein names: Melibiase [H]
Number of amino acids: Translated: 699; Mature: 698
Protein sequence:
>699_residues MGEVFALHSGDGSLVWEADDGSAPAWRHFGPRLTADGIRPIRDQRAPASYSLDDDVPFAVAPAAGLGWFGPSAMCLRRGS VALVPAMAGASVAGDAGSVRIITRDPVAGVELEQVFEAVGGAFVCRSVVRNIGSETFEVDWLSSALLPIAGSAREIVSWR GRHNAELVECREPMPQHSWVREGRRGISGHGGPPGLFVLDEGATYHAGTVRALQLAWSGDARIEVERDDEGFWTLNAGAV LQPGEASLAPGESWQSPDAIVTVSTSGRNGAAQAFHDAVRARIRWPDGAMRPRPVHLNSWEACYFDHDEERIVALAEAAA SVGVERFILDDGWFRGRNDDTAGLGDWTTDPVKYPHGLRTLADRVNALGMEFGLWVEPEMINPDSDLYRAYPDWALALPG RKRPTARNQLVLDMRRRDVRDHLFGCIDALLRELPITYLKWDHNRDLAPAGGAAQMRGAYELFARVRAAHPAVEIEACAG GGGRNDAGMADYCHRYWTSDNIDAASRIGIQRGFLSFLPPEVMGSHIAASPAHATGRRHSLGFRAAMAMAGHLGVEMDPR TLGDAERAELADWIAFHKQWRGLLHQGTVWLGEGADAAFWQAQGNAAELLLFVIRADPPLDRRPQPLPLPFAGQDGTWDI RLLRIAGGEGGHAAHSAALFEAMKAAPQAFPADWLSANGLPLPPCKAETVTIFHLRKRA
Sequences:
>Translated_699_residues MGEVFALHSGDGSLVWEADDGSAPAWRHFGPRLTADGIRPIRDQRAPASYSLDDDVPFAVAPAAGLGWFGPSAMCLRRGS VALVPAMAGASVAGDAGSVRIITRDPVAGVELEQVFEAVGGAFVCRSVVRNIGSETFEVDWLSSALLPIAGSAREIVSWR GRHNAELVECREPMPQHSWVREGRRGISGHGGPPGLFVLDEGATYHAGTVRALQLAWSGDARIEVERDDEGFWTLNAGAV LQPGEASLAPGESWQSPDAIVTVSTSGRNGAAQAFHDAVRARIRWPDGAMRPRPVHLNSWEACYFDHDEERIVALAEAAA SVGVERFILDDGWFRGRNDDTAGLGDWTTDPVKYPHGLRTLADRVNALGMEFGLWVEPEMINPDSDLYRAYPDWALALPG RKRPTARNQLVLDMRRRDVRDHLFGCIDALLRELPITYLKWDHNRDLAPAGGAAQMRGAYELFARVRAAHPAVEIEACAG GGGRNDAGMADYCHRYWTSDNIDAASRIGIQRGFLSFLPPEVMGSHIAASPAHATGRRHSLGFRAAMAMAGHLGVEMDPR TLGDAERAELADWIAFHKQWRGLLHQGTVWLGEGADAAFWQAQGNAAELLLFVIRADPPLDRRPQPLPLPFAGQDGTWDI RLLRIAGGEGGHAAHSAALFEAMKAAPQAFPADWLSANGLPLPPCKAETVTIFHLRKRA >Mature_698_residues GEVFALHSGDGSLVWEADDGSAPAWRHFGPRLTADGIRPIRDQRAPASYSLDDDVPFAVAPAAGLGWFGPSAMCLRRGSV ALVPAMAGASVAGDAGSVRIITRDPVAGVELEQVFEAVGGAFVCRSVVRNIGSETFEVDWLSSALLPIAGSAREIVSWRG RHNAELVECREPMPQHSWVREGRRGISGHGGPPGLFVLDEGATYHAGTVRALQLAWSGDARIEVERDDEGFWTLNAGAVL QPGEASLAPGESWQSPDAIVTVSTSGRNGAAQAFHDAVRARIRWPDGAMRPRPVHLNSWEACYFDHDEERIVALAEAAAS VGVERFILDDGWFRGRNDDTAGLGDWTTDPVKYPHGLRTLADRVNALGMEFGLWVEPEMINPDSDLYRAYPDWALALPGR KRPTARNQLVLDMRRRDVRDHLFGCIDALLRELPITYLKWDHNRDLAPAGGAAQMRGAYELFARVRAAHPAVEIEACAGG GGRNDAGMADYCHRYWTSDNIDAASRIGIQRGFLSFLPPEVMGSHIAASPAHATGRRHSLGFRAAMAMAGHLGVEMDPRT LGDAERAELADWIAFHKQWRGLLHQGTVWLGEGADAAFWQAQGNAAELLLFVIRADPPLDRRPQPLPLPFAGQDGTWDIR LLRIAGGEGGHAAHSAALFEAMKAAPQAFPADWLSANGLPLPPCKAETVTIFHLRKRA
Specific function: Unknown
COG id: COG3345
COG function: function code G; Alpha-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 36 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR002252 - InterPro: IPR017853 - InterPro: IPR000111 [H]
Pfam domain/function: PF02065 Melibiase [H]
EC number: =3.2.1.22 [H]
Molecular weight: Translated: 75843; Mature: 75712
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: PS00512 ALPHA_GALACTOSIDASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGEVFALHSGDGSLVWEADDGSAPAWRHFGPRLTADGIRPIRDQRAPASYSLDDDVPFAV CCCEEEEECCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEE APAAGLGWFGPSAMCLRRGSVALVPAMAGASVAGDAGSVRIITRDPVAGVELEQVFEAVG ECCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHC GAFVCRSVVRNIGSETFEVDWLSSALLPIAGSAREIVSWRGRHNAELVECREPMPQHSWV HHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHCCCCCCHHHH REGRRGISGHGGPPGLFVLDEGATYHAGTVRALQLAWSGDARIEVERDDEGFWTLNAGAV HHHHCCCCCCCCCCEEEEECCCCEEECCCEEEEEEEECCCCEEEEEECCCCEEEECCCCE LQPGEASLAPGESWQSPDAIVTVSTSGRNGAAQAFHDAVRARIRWPDGAMRPRPVHLNSW ECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEEECCCCCCCCCCEECCCC EACYFDHDEERIVALAEAAASVGVERFILDDGWFRGRNDDTAGLGDWTTDPVKYPHGLRT CEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH LADRVNALGMEFGLWVEPEMINPDSDLYRAYPDWALALPGRKRPTARNQLVLDMRRRDVR HHHHHHHCCCCCCCEECCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH DHLFGCIDALLRELPITYLKWDHNRDLAPAGGAAQMRGAYELFARVRAAHPAVEIEACAG HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC GGGRNDAGMADYCHRYWTSDNIDAASRIGIQRGFLSFLPPEVMGSHIAASPAHATGRRHS CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCC LGFRAAMAMAGHLGVEMDPRTLGDAERAELADWIAFHKQWRGLLHQGTVWLGEGADAAFW CHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEE QAQGNAAELLLFVIRADPPLDRRPQPLPLPFAGQDGTWDIRLLRIAGGEGGHAAHSAALF ECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHH EAMKAAPQAFPADWLSANGLPLPPCKAETVTIFHLRKRA HHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEECCC >Mature Secondary Structure GEVFALHSGDGSLVWEADDGSAPAWRHFGPRLTADGIRPIRDQRAPASYSLDDDVPFAV CCEEEEECCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEE APAAGLGWFGPSAMCLRRGSVALVPAMAGASVAGDAGSVRIITRDPVAGVELEQVFEAVG ECCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHC GAFVCRSVVRNIGSETFEVDWLSSALLPIAGSAREIVSWRGRHNAELVECREPMPQHSWV HHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHCCCCCCHHHH REGRRGISGHGGPPGLFVLDEGATYHAGTVRALQLAWSGDARIEVERDDEGFWTLNAGAV HHHHCCCCCCCCCCEEEEECCCCEEECCCEEEEEEEECCCCEEEEEECCCCEEEECCCCE LQPGEASLAPGESWQSPDAIVTVSTSGRNGAAQAFHDAVRARIRWPDGAMRPRPVHLNSW ECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEEECCCCCCCCCCEECCCC EACYFDHDEERIVALAEAAASVGVERFILDDGWFRGRNDDTAGLGDWTTDPVKYPHGLRT CEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH LADRVNALGMEFGLWVEPEMINPDSDLYRAYPDWALALPGRKRPTARNQLVLDMRRRDVR HHHHHHHCCCCCCCEECCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH DHLFGCIDALLRELPITYLKWDHNRDLAPAGGAAQMRGAYELFARVRAAHPAVEIEACAG HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC GGGRNDAGMADYCHRYWTSDNIDAASRIGIQRGFLSFLPPEVMGSHIAASPAHATGRRHS CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCC LGFRAAMAMAGHLGVEMDPRTLGDAERAELADWIAFHKQWRGLLHQGTVWLGEGADAAFW CHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEE QAQGNAAELLLFVIRADPPLDRRPQPLPLPFAGQDGTWDIRLLRIAGGEGGHAAHSAALF ECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHH EAMKAAPQAFPADWLSANGLPLPPCKAETVTIFHLRKRA HHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2556373; 2180920; 786627 [H]