| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199894
Identifier: 87199894
GI number: 87199894
Start: 1978421
End: 1979797
Strand: Direct
Name: 87199894
Synonym: Saro_1877
Alternate gene names: NA
Gene position: 1978421-1979797 (Clockwise)
Preceding gene: 87199892
Following gene: 87199895
Centisome position: 55.55
GC content: 63.11
Gene sequence:
>1377_bases GTGAACGGCATCAATGCAAATCGACCGCACCTGCCGCTGGCAAGGATACTCGAGATGAATCTCGGATTCCTGGGCCTGCA ATTCAGCTTCGGGCTGCAGCAGGGCAACATGGGGCCGATATACAGCTATCTGGGTGCCGACGAATCCCAGCTCCCCATGC TCCAGCTTGCCGGGCCTATCACGGGGCTCCTCGTCCAGCCGATCATCGGCGCGATGAGCGACCGGACCGCCAGCCGATGG GGCCGGCGCACACCCTATTTCCTGATCGGTGCCGTGCTGTGCGCATTCGGCCTGTTCTTCATGCCGCTGTCGAGCTCGAT CCTGATGGCAATGTCGCTGTTATGGATCCTCGACGCGGGCAACAACATCACCATGGAGCCGTACCGGGCATATGTCTCCG ACCGGCTGAACCCGGAACAGCGTCAGGCGGGTTTCCTGTCGCAGAGCGCATTCACCGGCCTTGCCCAGATGCTGGCCTTT CTCACGCCCTCGCTGCTGGTCGGCCTTGGCATGAACCAGGACTGGGTCGACAGCCACGGCATCCCCTACACCGTGCGCAT CGTGTTCATGATCGGCGCTGTCCTTTCGCTCAGCACGATTCTTTGGTCCGTTCTTCGCGTTCCCGAACTGCCGCTGACGC CGCAGGAGCGCGCCCACATCCAGGCACAGCCCAAGGGCGCTTGGGCCACCCTGCGTGAGATCGGCGAAGCGATTGCCGAC ATGCCCGTCGCGATGCGCAAGCTCGGCCTGATGAGCCTGTTCCAGTGGGTCGGCATGTCCGGGTACTGGACCTACGCGGT CTATTCGATCAGCCGCACCGTCTATGGCACGTCGGACGTCCATAGCAGCGCCTTCCATACCGCCGTTCTGACCAATGGCG AGGTTGCCGCATTCTACAATGCGATATCCTTCGTCACGGCCTTTGCCATGGTGCCGCTGGTCAGGCGCCTTGGGCCCGGA CCGCTGCATGCCCTGTGCCTGTTCGCTGGCGGGGTGGGGATGTTCCTCCTGCCCAACGTCACCGACAAGGCTTTGCTATT CCTGCCGGCCATCGGCATCGGCCTCGCCTGGGGGAGCATCATGGGCAATCCCTATGCGATCCTGACCAATTCGATCCCGC CCCAGCGCACTGGGGTCTACATGGGCATCTTCAACATGATGATCGTGATCCCGATGCTGATCTTCGCGGTGGTGATGAGC AGACTCGACCTGGGCTTCGTCTCGCTCGGCTTCGACGCGTACAAGCAGGTCCTCGGCGGCGATCCCCGCAACATGCTGAT GTTTTGCGGCGCGTCGCTGGTGCTCGCGGGCTTCTCGGTGCTCTGGGTGCGCGAAGGACGAGCCGGCGCGATGCCGCAAT CGGCGGTGCCGGCCTGA
Upstream 100 bases:
>100_bases AGTTCGGTTCAAGCATTTATGCAATCGATTGTTGTCACGCGCCCCCGGCTGTGGCATGACACGCTCAGGGCTCGGCGAAG CCTGACGGGAGAGTTCACAA
Downstream 100 bases:
>100_bases TGGGCGAGGTATTCGCCTTGCACTCCGGGGACGGCAGTCTCGTCTGGGAAGCGGACGACGGCAGCGCGCCCGCGTGGCGG CACTTCGGCCCCCGGCTGAC
Product: major facilitator transporter
Products: NA
Alternate protein names: Sugar Transporter; Transporter Facilitator Family; Facilitator Superfamily Permease; Facilitator Superfamily Protein; SugarCation Symporter; Facilitator Superfamily Transporter Permease; Cytoplasmic Membrane Maltose Transporter MalY; Transport Protein Facilitator Superfamily Protein; MFS Superfamily Sugcific Permease; Facilitator Superfamily Transmembrane Protein; Facilitator Family Transporter; Sucrose Transporter Protein
Number of amino acids: Translated: 458; Mature: 458
Protein sequence:
>458_residues MNGINANRPHLPLARILEMNLGFLGLQFSFGLQQGNMGPIYSYLGADESQLPMLQLAGPITGLLVQPIIGAMSDRTASRW GRRTPYFLIGAVLCAFGLFFMPLSSSILMAMSLLWILDAGNNITMEPYRAYVSDRLNPEQRQAGFLSQSAFTGLAQMLAF LTPSLLVGLGMNQDWVDSHGIPYTVRIVFMIGAVLSLSTILWSVLRVPELPLTPQERAHIQAQPKGAWATLREIGEAIAD MPVAMRKLGLMSLFQWVGMSGYWTYAVYSISRTVYGTSDVHSSAFHTAVLTNGEVAAFYNAISFVTAFAMVPLVRRLGPG PLHALCLFAGGVGMFLLPNVTDKALLFLPAIGIGLAWGSIMGNPYAILTNSIPPQRTGVYMGIFNMMIVIPMLIFAVVMS RLDLGFVSLGFDAYKQVLGGDPRNMLMFCGASLVLAGFSVLWVREGRAGAMPQSAVPA
Sequences:
>Translated_458_residues MNGINANRPHLPLARILEMNLGFLGLQFSFGLQQGNMGPIYSYLGADESQLPMLQLAGPITGLLVQPIIGAMSDRTASRW GRRTPYFLIGAVLCAFGLFFMPLSSSILMAMSLLWILDAGNNITMEPYRAYVSDRLNPEQRQAGFLSQSAFTGLAQMLAF LTPSLLVGLGMNQDWVDSHGIPYTVRIVFMIGAVLSLSTILWSVLRVPELPLTPQERAHIQAQPKGAWATLREIGEAIAD MPVAMRKLGLMSLFQWVGMSGYWTYAVYSISRTVYGTSDVHSSAFHTAVLTNGEVAAFYNAISFVTAFAMVPLVRRLGPG PLHALCLFAGGVGMFLLPNVTDKALLFLPAIGIGLAWGSIMGNPYAILTNSIPPQRTGVYMGIFNMMIVIPMLIFAVVMS RLDLGFVSLGFDAYKQVLGGDPRNMLMFCGASLVLAGFSVLWVREGRAGAMPQSAVPA >Mature_458_residues MNGINANRPHLPLARILEMNLGFLGLQFSFGLQQGNMGPIYSYLGADESQLPMLQLAGPITGLLVQPIIGAMSDRTASRW GRRTPYFLIGAVLCAFGLFFMPLSSSILMAMSLLWILDAGNNITMEPYRAYVSDRLNPEQRQAGFLSQSAFTGLAQMLAF LTPSLLVGLGMNQDWVDSHGIPYTVRIVFMIGAVLSLSTILWSVLRVPELPLTPQERAHIQAQPKGAWATLREIGEAIAD MPVAMRKLGLMSLFQWVGMSGYWTYAVYSISRTVYGTSDVHSSAFHTAVLTNGEVAAFYNAISFVTAFAMVPLVRRLGPG PLHALCLFAGGVGMFLLPNVTDKALLFLPAIGIGLAWGSIMGNPYAILTNSIPPQRTGVYMGIFNMMIVIPMLIFAVVMS RLDLGFVSLGFDAYKQVLGGDPRNMLMFCGASLVLAGFSVLWVREGRAGAMPQSAVPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI61635915, Length=169, Percent_Identity=24.8520710059172, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI61636000, Length=169, Percent_Identity=24.8520710059172, Blast_Score=74, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49676; Mature: 49676
Theoretical pI: Translated: 8.98; Mature: 8.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.9 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 5.9 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGINANRPHLPLARILEMNLGFLGLQFSFGLQQGNMGPIYSYLGADESQLPMLQLAGPI CCCCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHCHH TGLLVQPIIGAMSDRTASRWGRRTPYFLIGAVLCAFGLFFMPLSSSILMAMSLLWILDAG HHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NNITMEPYRAYVSDRLNPEQRQAGFLSQSAFTGLAQMLAFLTPSLLVGLGMNQDWVDSHG CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC IPYTVRIVFMIGAVLSLSTILWSVLRVPELPLTPQERAHIQAQPKGAWATLREIGEAIAD CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHH MPVAMRKLGLMSLFQWVGMSGYWTYAVYSISRTVYGTSDVHSSAFHTAVLTNGEVAAFYN HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCHHHHHHHHHHEECCCCHHHHHH AISFVTAFAMVPLVRRLGPGPLHALCLFAGGVGMFLLPNVTDKALLFLPAIGIGLAWGSI HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH MGNPYAILTNSIPPQRTGVYMGIFNMMIVIPMLIFAVVMSRLDLGFVSLGFDAYKQVLGG CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHCC DPRNMLMFCGASLVLAGFSVLWVREGRAGAMPQSAVPA CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC >Mature Secondary Structure MNGINANRPHLPLARILEMNLGFLGLQFSFGLQQGNMGPIYSYLGADESQLPMLQLAGPI CCCCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHCHH TGLLVQPIIGAMSDRTASRWGRRTPYFLIGAVLCAFGLFFMPLSSSILMAMSLLWILDAG HHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NNITMEPYRAYVSDRLNPEQRQAGFLSQSAFTGLAQMLAFLTPSLLVGLGMNQDWVDSHG CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC IPYTVRIVFMIGAVLSLSTILWSVLRVPELPLTPQERAHIQAQPKGAWATLREIGEAIAD CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHH MPVAMRKLGLMSLFQWVGMSGYWTYAVYSISRTVYGTSDVHSSAFHTAVLTNGEVAAFYN HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCHHHHHHHHHHEECCCCHHHHHH AISFVTAFAMVPLVRRLGPGPLHALCLFAGGVGMFLLPNVTDKALLFLPAIGIGLAWGSI HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH MGNPYAILTNSIPPQRTGVYMGIFNMMIVIPMLIFAVVMSRLDLGFVSLGFDAYKQVLGG CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHCC DPRNMLMFCGASLVLAGFSVLWVREGRAGAMPQSAVPA CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA