| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199888
Identifier: 87199888
GI number: 87199888
Start: 1972870
End: 1973403
Strand: Direct
Name: 87199888
Synonym: Saro_1871
Alternate gene names: NA
Gene position: 1972870-1973403 (Clockwise)
Preceding gene: 87199887
Following gene: 87199889
Centisome position: 55.39
GC content: 64.04
Gene sequence:
>534_bases ATGGGCACGATGAAGGCGCCTCCTTCGGGCGCATACAAGATCGTCAGCGTCCCCGAACTCTACGGGGACCTGATCCGGGC GAAGGGCGTCGAGGGAACTTACGTCGGCTCGTCGGAGGCGGAGAGCCCGTGGGTTCCGTTCGGCGACAATGCCGCGATCC GGCACCTGGCGTTCGACGTTCGCGAGAACGTCTACGTCAACGTGCTGTGGATCAAGGGTCCGGGCGTGATCGGTACGCAC AAGCACCGCGGCAAGGTCTGGGCGGTCGGGCTCGAAGGCTCGTTCCGCTACCTCGAGTACGACTGGGTGTGCCGCCCCGG CGACTTCATCACCGAGACGCCGGGCACCGCCCACACGCTCGTCACCGACGATCCGAACGGCATGAAGGCGCTGTTCCACA TGCAGGGCGCCAACGAGTTCTTCGACGAGAACGGCAACCACGTGGAGACGCTCGACGTGTGGTGGTTCATGAACCACTAC GAGACCTACTGCCGCGAGAACGGCATCGCCATCAACCCCGCTCTCTATCTCTGA
Upstream 100 bases:
>100_bases ATCGACACCACCGACGTCTGGTGGTTCATCAACCACTACGAGACCTACTGCCGCGAGAACGGCATCGCCATCAACCCCAA GCTCTATCTCTGAGGCCGCC
Downstream 100 bases:
>100_bases GGGCAGTGGCATGAGCGGCGGCGAACCGGTTCCGAAGCTGTCGGCGAAACCCGCCGCCACGTATCTTCGCAACACCTGGT ACGTGGCGGGCTGGGCCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Cupin 2 Barrel; 2 4-Dihydroxyacetophenone Dioxygenase; Cupin 2 Conserved Barrel; Cupin 2 Protein; Cupin 2 Conserved Barrel Domain Protein
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MGTMKAPPSGAYKIVSVPELYGDLIRAKGVEGTYVGSSEAESPWVPFGDNAAIRHLAFDVRENVYVNVLWIKGPGVIGTH KHRGKVWAVGLEGSFRYLEYDWVCRPGDFITETPGTAHTLVTDDPNGMKALFHMQGANEFFDENGNHVETLDVWWFMNHY ETYCRENGIAINPALYL
Sequences:
>Translated_177_residues MGTMKAPPSGAYKIVSVPELYGDLIRAKGVEGTYVGSSEAESPWVPFGDNAAIRHLAFDVRENVYVNVLWIKGPGVIGTH KHRGKVWAVGLEGSFRYLEYDWVCRPGDFITETPGTAHTLVTDDPNGMKALFHMQGANEFFDENGNHVETLDVWWFMNHY ETYCRENGIAINPALYL >Mature_176_residues GTMKAPPSGAYKIVSVPELYGDLIRAKGVEGTYVGSSEAESPWVPFGDNAAIRHLAFDVRENVYVNVLWIKGPGVIGTHK HRGKVWAVGLEGSFRYLEYDWVCRPGDFITETPGTAHTLVTDDPNGMKALFHMQGANEFFDENGNHVETLDVWWFMNHYE TYCRENGIAINPALYL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19827; Mature: 19695
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTMKAPPSGAYKIVSVPELYGDLIRAKGVEGTYVGSSEAESPWVPFGDNAAIRHLAFDV CCCCCCCCCCCEEEEECHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEEC RENVYVNVLWIKGPGVIGTHKHRGKVWAVGLEGSFRYLEYDWVCRPGDFITETPGTAHTL CCCEEEEEEEEECCCEECCCCCCCEEEEEEECCCEEEEEEEEEECCCCCEECCCCCEEEE VTDDPNGMKALFHMQGANEFFDENGNHVETLDVWWFMNHYETYCRENGIAINPALYL EECCCCCEEEEEEECCCCHHHHCCCCEEEEEEEEEEHHHHHHHHHCCCEEECCEEEC >Mature Secondary Structure GTMKAPPSGAYKIVSVPELYGDLIRAKGVEGTYVGSSEAESPWVPFGDNAAIRHLAFDV CCCCCCCCCCEEEEECHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEEC RENVYVNVLWIKGPGVIGTHKHRGKVWAVGLEGSFRYLEYDWVCRPGDFITETPGTAHTL CCCEEEEEEEEECCCEECCCCCCCEEEEEEECCCEEEEEEEEEECCCCCEECCCCCEEEE VTDDPNGMKALFHMQGANEFFDENGNHVETLDVWWFMNHYETYCRENGIAINPALYL EECCCCCEEEEEEECCCCHHHHCCCCEEEEEEEEEEHHHHHHHHHCCCEEECCEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA