| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is exuT [H]
Identifier: 87199883
GI number: 87199883
Start: 1966737
End: 1968014
Strand: Direct
Name: exuT [H]
Synonym: Saro_1866
Alternate gene names: 87199883
Gene position: 1966737-1968014 (Clockwise)
Preceding gene: 87199882
Following gene: 87199884
Centisome position: 55.22
GC content: 66.43
Gene sequence:
>1278_bases ATGCGGGACGACCACATGGGCGATGCCGGACAGGGTACCGGCGCCGGACAGGCAAGGGGGAAGGGCTACCAGATCTGGGT GACCGCCCTGCTCAGCCTCAACTTCGGCATCCTGTTCTTCGACCGCAACGCGGTGAACTTCCTCATGCCGTTCGTGCAGC CGGACCTGAAGCTGACCAATACCCAGGTCGGCATGTTCAGTTCCGCCCTGTCGCTGACATGGGCGCTTTCGGGGCTTTTG GTCGGGCGGATATCGGACAAGCTGGGGTCGAAGAAGCCAGTCGTCGTGATCGCGACGATCGCATTCTGCCTGTGCTCGTT CATCTCAGGCGCGGCCTCGTCATTCCTGATGCTTCTGGGGGCGCGCCTCCTGATGGGCGCGGCGGAAGGCGGCGTGATGC CGGTCAGCCACGCGATGATCGTTTCGGAAGTCGCGCCCGAACGCCGTGGGCTTGCCATGGGCGTCGCGCAGAACCTCGGG TCGAACCTGCTGGGCTCGGGCCTCGCGCCGATCCTGCTGGTCCCGGTCGCGGCGGCAGTGGGCTGGCGGACGGGTTTCTA TCTTGCCGCCCTGCCGGGCCTCGTCACGGCGGCGCTTATCTGGTTCACCCTGCGTGAGCCGCCGGCCGAGGTCCATGACG AGGCGACGCCCAAGGTGACGCTGCGCGAGGCCTTCGCCCACCGCAACGTGATCCTGTGTGCGCTGATCGCGATCCTGCTC GTGTCATACCTCGTCGTGTGCTGGGCATTCATGCCTCTCTACCTGACCAAGGCACGCGGCTTCGCGCCCGAGACGATGGG CTGGCTGATGGCCACGCTGGGGATTTCGGCGGGTATCGGCAGCTTCGTGGTGCCGGCCATTTCCGATGCCATCGGACGGC GTCCCGTCATGATCTTCTTCTCGTTCCTGGGCGTCATCCTTCCACTCGGCGCGCTGTACTACCAGGGCTCGACGCTGGTG CTGGCCGCGATCTTCTTCATCGGATGGGGCCTGAACGGTCTGTTTCCGATGTTCATGGCGACCATCCCGGCGGAATCGGT GGACCCGCGCCTGACGGCGACGCTGACCGGCGTCGTCATGGGCACGGGCGAGGTGCTTGGCGGCGTGCTGAGCCCGTTCT TCGCAGGCGCGCTGGCCGACTCCTACGGCCTTTCGGCTCCGCTCTGGCTGATGCTGGTGTGCACGGTTCTGGCGGGGATG CTGACGCTGGGACTGATCGAATCCGCACCGCGCGTGGTGGCGCGGCGCCTAACCCCGGCCTTGGCAGCCGGGACCTGA
Upstream 100 bases:
>100_bases TCGGGCTGCGCGCCAATGCAAGAGAGGACGGCGACGACGGACTAGGACGCTACGGAAAGGCGGCAAGATGGACCGCCCAG GACGGGATGGGGAGAACGGG
Downstream 100 bases:
>100_bases CAACGGGAGAAGAGACATGGGTGCGCTTCTCAAGTTTCATACGCAGGACGTCGCTCCGCAGGACCGGGCGCGCTACTGGA ACGAGATTGCCGACCGGGTC
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 425; Mature: 425
Protein sequence:
>425_residues MRDDHMGDAGQGTGAGQARGKGYQIWVTALLSLNFGILFFDRNAVNFLMPFVQPDLKLTNTQVGMFSSALSLTWALSGLL VGRISDKLGSKKPVVVIATIAFCLCSFISGAASSFLMLLGARLLMGAAEGGVMPVSHAMIVSEVAPERRGLAMGVAQNLG SNLLGSGLAPILLVPVAAAVGWRTGFYLAALPGLVTAALIWFTLREPPAEVHDEATPKVTLREAFAHRNVILCALIAILL VSYLVVCWAFMPLYLTKARGFAPETMGWLMATLGISAGIGSFVVPAISDAIGRRPVMIFFSFLGVILPLGALYYQGSTLV LAAIFFIGWGLNGLFPMFMATIPAESVDPRLTATLTGVVMGTGEVLGGVLSPFFAGALADSYGLSAPLWLMLVCTVLAGM LTLGLIESAPRVVARRLTPALAAGT
Sequences:
>Translated_425_residues MRDDHMGDAGQGTGAGQARGKGYQIWVTALLSLNFGILFFDRNAVNFLMPFVQPDLKLTNTQVGMFSSALSLTWALSGLL VGRISDKLGSKKPVVVIATIAFCLCSFISGAASSFLMLLGARLLMGAAEGGVMPVSHAMIVSEVAPERRGLAMGVAQNLG SNLLGSGLAPILLVPVAAAVGWRTGFYLAALPGLVTAALIWFTLREPPAEVHDEATPKVTLREAFAHRNVILCALIAILL VSYLVVCWAFMPLYLTKARGFAPETMGWLMATLGISAGIGSFVVPAISDAIGRRPVMIFFSFLGVILPLGALYYQGSTLV LAAIFFIGWGLNGLFPMFMATIPAESVDPRLTATLTGVVMGTGEVLGGVLSPFFAGALADSYGLSAPLWLMLVCTVLAGM LTLGLIESAPRVVARRLTPALAAGT >Mature_425_residues MRDDHMGDAGQGTGAGQARGKGYQIWVTALLSLNFGILFFDRNAVNFLMPFVQPDLKLTNTQVGMFSSALSLTWALSGLL VGRISDKLGSKKPVVVIATIAFCLCSFISGAASSFLMLLGARLLMGAAEGGVMPVSHAMIVSEVAPERRGLAMGVAQNLG SNLLGSGLAPILLVPVAAAVGWRTGFYLAALPGLVTAALIWFTLREPPAEVHDEATPKVTLREAFAHRNVILCALIAILL VSYLVVCWAFMPLYLTKARGFAPETMGWLMATLGISAGIGSFVVPAISDAIGRRPVMIFFSFLGVILPLGALYYQGSTLV LAAIFFIGWGLNGLFPMFMATIPAESVDPRLTATLTGVVMGTGEVLGGVLSPFFAGALADSYGLSAPLWLMLVCTVLAGM LTLGLIESAPRVVARRLTPALAAGT
Specific function: Aldohexuronate transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]
Homologues:
Organism=Escherichia coli, GI87082320, Length=412, Percent_Identity=22.0873786407767, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI87082404, Length=384, Percent_Identity=22.9166666666667, Blast_Score=69, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004744 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 44613; Mature: 44613
Theoretical pI: Translated: 8.72; Mature: 8.72
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDDHMGDAGQGTGAGQARGKGYQIWVTALLSLNFGILFFDRNAVNFLMPFVQPDLKLTN CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCEECC TQVGMFSSALSLTWALSGLLVGRISDKLGSKKPVVVIATIAFCLCSFISGAASSFLMLLG CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH ARLLMGAAEGGVMPVSHAMIVSEVAPERRGLAMGVAQNLGSNLLGSGLAPILLVPVAAAV HHHHHHCCCCCCCCHHHHHHHHHHCCHHCCHHHHHHHHHCHHHHHCCCHHHHHHHHHHHH GWRTGFYLAALPGLVTAALIWFTLREPPAEVHDEATPKVTLREAFAHRNVILCALIAILL HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHH VSYLVVCWAFMPLYLTKARGFAPETMGWLMATLGISAGIGSFVVPAISDAIGRRPVMIFF HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHH SFLGVILPLGALYYQGSTLVLAAIFFIGWGLNGLFPMFMATIPAESVDPRLTATLTGVVM HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH GTGEVLGGVLSPFFAGALADSYGLSAPLWLMLVCTVLAGMLTLGLIESAPRVVARRLTPA CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH LAAGT HHCCC >Mature Secondary Structure MRDDHMGDAGQGTGAGQARGKGYQIWVTALLSLNFGILFFDRNAVNFLMPFVQPDLKLTN CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCEECC TQVGMFSSALSLTWALSGLLVGRISDKLGSKKPVVVIATIAFCLCSFISGAASSFLMLLG CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH ARLLMGAAEGGVMPVSHAMIVSEVAPERRGLAMGVAQNLGSNLLGSGLAPILLVPVAAAV HHHHHHCCCCCCCCHHHHHHHHHHCCHHCCHHHHHHHHHCHHHHHCCCHHHHHHHHHHHH GWRTGFYLAALPGLVTAALIWFTLREPPAEVHDEATPKVTLREAFAHRNVILCALIAILL HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHH VSYLVVCWAFMPLYLTKARGFAPETMGWLMATLGISAGIGSFVVPAISDAIGRRPVMIFF HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHH SFLGVILPLGALYYQGSTLVLAAIFFIGWGLNGLFPMFMATIPAESVDPRLTATLTGVVM HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH GTGEVLGGVLSPFFAGALADSYGLSAPLWLMLVCTVLAGMLTLGLIESAPRVVARRLTPA CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH LAAGT HHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579062; 9384377 [H]