| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is sam [H]
Identifier: 87199874
GI number: 87199874
Start: 1957674
End: 1958576
Strand: Direct
Name: sam [H]
Synonym: Saro_1857
Alternate gene names: 87199874
Gene position: 1957674-1958576 (Clockwise)
Preceding gene: 87199872
Following gene: 87199880
Centisome position: 54.97
GC content: 65.56
Gene sequence:
>903_bases TTGCAAGACAGTCACAGATCCGCGCTGATTTTCGCGCTTCTCGGCTTTGCCCTGCTTTCGGTCGGCGATGCGGTGGTCAA GAGTATGGCGGGCATGTGGCCGGGAACCGCGATCGGCGCGCTGCGCTACGTCTTCGGCGCAGTCGGCCTGGGGATCGTAC TGCTGCTTCGCGAAGGGCCTTCGGGCTTCGCGTTTCCGAAGCCGCGCTGGCAGGTGTTGCGGGGCTTCTGCGTGGCGATG TCGGCCATGTCGTTCTTCAGCGCCGTGCACCTGATGCCGATTGGAGAGGCGACCGCGATTTCCTTTACGAGCCCGATGAT TACGGCGCTTCTTGCAGCAGTGCTGCTAAAGGAGCCGCTGCGACGCGAGACCTGGATCGCCAGCATCGTGGCATTCGGCG GCGTGCTGCTGATCCTGCGCCCGAACTTCGGCCTGCTGGGCCTTGCAGCGCTGCTGCCCATGGTCTCCGCGACGGGGATG GCGCTGCTCATTATCGCGAACCGCAAGGTGGCCGGAATGGGGAGCGCGCTTTCGATGCAGTTCAACGTCGCGCTGATCGG CAGCCTGTTCCTTTGCATCGCCACATTGTCCGGCCATTTCAGCGGGGTGGCCTTCTTCGCGGTCCAGGTTCCGGCAATGT CCGTGATCGCCAAGTGCGCGCTCATCGCGGTCAGTGCCAGCACGGCCCATGCGCTTATCTACATGGCGACGACGCGTGCC GGCGCAGCCACGATCGCGCCGATGACCTACGTCCAGCTTCTCATGGCCGGTGTGCTGGGCTGGGGCCTGTTCGGCGAGCG GCCGGACGGGGTTGCGGCTGCCGGGGCGGTCATCATCGTGGGCGCGGGGCTCTACCTGTGGAGAGCGGGCCGCGCACCCG AAGAGCCGACGATGACCGACTGA
Upstream 100 bases:
>100_bases TTTCTGTGTGGAGCGAGAAGTCGAAGGCGACTAGAGCCCCTGCCGGGGATGTAACAATCGGCAGCCGGTGCCCTCCGGCG CTTTCCAGGGAACGTCGCGC
Downstream 100 bases:
>100_bases TTGTGAATGAATACAGCACTTCAAGGCGGAAATGCGGGTGAATGACCCGAACGGCACCTAAAAGCACCTAAAAGCACCTA ACCACACGCGGCGGCGATCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MQDSHRSALIFALLGFALLSVGDAVVKSMAGMWPGTAIGALRYVFGAVGLGIVLLLREGPSGFAFPKPRWQVLRGFCVAM SAMSFFSAVHLMPIGEATAISFTSPMITALLAAVLLKEPLRRETWIASIVAFGGVLLILRPNFGLLGLAALLPMVSATGM ALLIIANRKVAGMGSALSMQFNVALIGSLFLCIATLSGHFSGVAFFAVQVPAMSVIAKCALIAVSASTAHALIYMATTRA GAATIAPMTYVQLLMAGVLGWGLFGERPDGVAAAGAVIIVGAGLYLWRAGRAPEEPTMTD
Sequences:
>Translated_300_residues MQDSHRSALIFALLGFALLSVGDAVVKSMAGMWPGTAIGALRYVFGAVGLGIVLLLREGPSGFAFPKPRWQVLRGFCVAM SAMSFFSAVHLMPIGEATAISFTSPMITALLAAVLLKEPLRRETWIASIVAFGGVLLILRPNFGLLGLAALLPMVSATGM ALLIIANRKVAGMGSALSMQFNVALIGSLFLCIATLSGHFSGVAFFAVQVPAMSVIAKCALIAVSASTAHALIYMATTRA GAATIAPMTYVQLLMAGVLGWGLFGERPDGVAAAGAVIIVGAGLYLWRAGRAPEEPTMTD >Mature_300_residues MQDSHRSALIFALLGFALLSVGDAVVKSMAGMWPGTAIGALRYVFGAVGLGIVLLLREGPSGFAFPKPRWQVLRGFCVAM SAMSFFSAVHLMPIGEATAISFTSPMITALLAAVLLKEPLRRETWIASIVAFGGVLLILRPNFGLLGLAALLPMVSATGM ALLIIANRKVAGMGSALSMQFNVALIGSLFLCIATLSGHFSGVAFFAVQVPAMSVIAKCALIAVSASTAHALIYMATTRA GAATIAPMTYVQLLMAGVLGWGLFGERPDGVAAAGAVIIVGAGLYLWRAGRAPEEPTMTD
Specific function: Transports S-adenosylmethionine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31131; Mature: 31131
Theoretical pI: Translated: 10.15; Mature: 10.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDSHRSALIFALLGFALLSVGDAVVKSMAGMWPGTAIGALRYVFGAVGLGIVLLLREGP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEECCC SGFAFPKPRWQVLRGFCVAMSAMSFFSAVHLMPIGEATAISFTSPMITALLAAVLLKEPL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECCHHHHHHHHHHHHHHHHH RRETWIASIVAFGGVLLILRPNFGLLGLAALLPMVSATGMALLIIANRKVAGMGSALSMQ HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHEEE FNVALIGSLFLCIATLSGHFSGVAFFAVQVPAMSVIAKCALIAVSASTAHALIYMATTRA EHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCHHEEEEEEEECCC GAATIAPMTYVQLLMAGVLGWGLFGERPDGVAAAGAVIIVGAGLYLWRAGRAPEEPTMTD CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCHHEEEECHHHEEECCCCCCCCCCCC >Mature Secondary Structure MQDSHRSALIFALLGFALLSVGDAVVKSMAGMWPGTAIGALRYVFGAVGLGIVLLLREGP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEECCC SGFAFPKPRWQVLRGFCVAMSAMSFFSAVHLMPIGEATAISFTSPMITALLAAVLLKEPL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECCHHHHHHHHHHHHHHHHH RRETWIASIVAFGGVLLILRPNFGLLGLAALLPMVSATGMALLIIANRKVAGMGSALSMQ HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHEEE FNVALIGSLFLCIATLSGHFSGVAFFAVQVPAMSVIAKCALIAVSASTAHALIYMATTRA EHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCHHEEEEEEEECCC GAATIAPMTYVQLLMAGVLGWGLFGERPDGVAAAGAVIIVGAGLYLWRAGRAPEEPTMTD CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCHHEEEECHHHEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA