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The map label for this gene is yfiO [C]

Identifier: 87199749

GI number: 87199749

Start: 1826055

End: 1826861

Strand: Direct

Name: yfiO [C]

Synonym: Saro_1732

Alternate gene names: 87199749

Gene position: 1826055-1826861 (Clockwise)

Preceding gene: 87199748

Following gene: 87199753

Centisome position: 51.27

GC content: 64.31

Gene sequence:

>807_bases
ATGACGCTTCATGCCATGCGCCGTTCGATGCGCCTCGCCGTCCTCGCTGCAGCCACTGTCGCCATCGGCGTCACCGCCGG
CTGTGCTGGCGGGGGGAAGGGCAAGAAGGACGTCGCCTACGTCGCGCGCGATGTCGATACGCTCTACACTGCGGCCAAGG
AACGCCTGGACCGCGGCGATTCCAAGCAGGCCGCTGCCCTGTTCGACGAGGTGGAACGCCAGCATCCCTATTCCCCCTGG
GCTCGCCGCGCCCAGTTGATGAGCGCGTTCAGCTACTACGTGGCGCGCGACTATTCGAAGTCGGTCCAGTCCGCGCAGCG
CTTCCTGTCGATCCACCCCGGCAACAAGGACGCGCCCTACGCCTACTATCTGATCGCGCTCTGCTATTACGAGCAGATCT
CCGACGTCACGCGCGACCAGAAGATCACCCAGCAGGCGCTGACCGCCATGAACGAGCTGGTCCGCCGCTACCCCAATACG
GACTACGCCGCCGACGCGCGCCTCAAGATCGACCTGATCAACGATCACCTTGCCGGCAAGGAAATGGAGATCGGCCGCAT
GTACCAGCGCAGCGGCAAGTGGCTCGCCAGCTCGCTGCGCTTCCGTACCGTCGTCGACAAGTACCAGACGACCAGCCATG
CGCCCGAAGCCCTCTACCGCCTCGTCGAAAGCTATCTCTCGCTGGGCCTGCCAGTCGAAGCGCAGAAGGCTGCCGCCGTG
CTCGGTTCCAACTACCCGGGCAGCAAGTGGTACGAACGCTCGTTCGAACTGATGAACAAGTACGCTCCGGGCACCCAGGC
AAGCTGA

Upstream 100 bases:

>100_bases
CTGTCCGTTTCGGGCCAGAAATTGGCCGCGCCGGCCACGGTCCGCGCAAAACCGGTGAACTTCACTTGGCGTTCAGGAAC
CGGCTGGCTATAGGGTCGGC

Downstream 100 bases:

>100_bases
CGCCTGCGCCGGGCCTGACCGCCGGCTGCTCCCACGGGGCTACTTGCCTCAGAAGCCGTAGACCAGCGTCAGCCGGCTCG
TGGTGTCGGTGGGTTGGCGA

Product: DNA uptake lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MTLHAMRRSMRLAVLAAATVAIGVTAGCAGGGKGKKDVAYVARDVDTLYTAAKERLDRGDSKQAAALFDEVERQHPYSPW
ARRAQLMSAFSYYVARDYSKSVQSAQRFLSIHPGNKDAPYAYYLIALCYYEQISDVTRDQKITQQALTAMNELVRRYPNT
DYAADARLKIDLINDHLAGKEMEIGRMYQRSGKWLASSLRFRTVVDKYQTTSHAPEALYRLVESYLSLGLPVEAQKAAAV
LGSNYPGSKWYERSFELMNKYAPGTQAS

Sequences:

>Translated_268_residues
MTLHAMRRSMRLAVLAAATVAIGVTAGCAGGGKGKKDVAYVARDVDTLYTAAKERLDRGDSKQAAALFDEVERQHPYSPW
ARRAQLMSAFSYYVARDYSKSVQSAQRFLSIHPGNKDAPYAYYLIALCYYEQISDVTRDQKITQQALTAMNELVRRYPNT
DYAADARLKIDLINDHLAGKEMEIGRMYQRSGKWLASSLRFRTVVDKYQTTSHAPEALYRLVESYLSLGLPVEAQKAAAV
LGSNYPGSKWYERSFELMNKYAPGTQAS
>Mature_267_residues
TLHAMRRSMRLAVLAAATVAIGVTAGCAGGGKGKKDVAYVARDVDTLYTAAKERLDRGDSKQAAALFDEVERQHPYSPWA
RRAQLMSAFSYYVARDYSKSVQSAQRFLSIHPGNKDAPYAYYLIALCYYEQISDVTRDQKITQQALTAMNELVRRYPNTD
YAADARLKIDLINDHLAGKEMEIGRMYQRSGKWLASSLRFRTVVDKYQTTSHAPEALYRLVESYLSLGLPVEAQKAAAVL
GSNYPGSKWYERSFELMNKYAPGTQAS

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=241, Percent_Identity=24.4813278008299, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30040; Mature: 29909

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TLHAMRRSMRLAVLAAATVAIGVTAGCAGGGKGKKDVAYVARDVDTLYTAAKERLDRGD
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
SKQAAALFDEVERQHPYSPWARRAQLMSAFSYYVARDYSKSVQSAQRFLSIHPGNKDAPY
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCH
AYYLIALCYYEQISDVTRDQKITQQALTAMNELVRRYPNTDYAADARLKIDLINDHLAGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCC
EMEIGRMYQRSGKWLASSLRFRTVVDKYQTTSHAPEALYRLVESYLSLGLPVEAQKAAAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
LGSNYPGSKWYERSFELMNKYAPGTQAS
HCCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]