| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199692
Identifier: 87199692
GI number: 87199692
Start: 1757069
End: 1758697
Strand: Direct
Name: 87199692
Synonym: Saro_1675
Alternate gene names: NA
Gene position: 1757069-1758697 (Clockwise)
Preceding gene: 87199690
Following gene: 87199693
Centisome position: 49.33
GC content: 65.25
Gene sequence:
>1629_bases ATGTTTGTGATGCTGGCAATGGCCAACGTCACCACTTCCGCGCCCCGCGCCGTCGCACCCGCCTATGACCCGCGCCTGGT AAGGGCCGCCGTCGCCATGAACGAGAACGACCTGCCCACGGCCGAACCCTTGCTGCGCGCCCTGCTGAAGGACGATCCGT TCGATGTCAGGGCGATCCGGCTCTTTGCCGAACTGGCCGGGCGGATCGGGCGCTATCAGGATGCGGAAAACCTCCTGCGC CGGGCGATAGAACTGGCGCCGCAGTTCACCGCCGCGCGCGCCAACCTCGCGCTCGTGCTATATCGCACGAACCGCGCGCC CGAGGCGCTTGAAGAGCTCGCCAAGGTGACCGCCGATGATCCCGAGAACGTCGGACATGCCAATCTTCAGGCCGCCGCCT ATGGCCGCATCGGCGAGTTCGACGAGGCGCTTGCCCTCTACGAGCAGGTCCTGAAGCAGGCGGCGGCCCAGCCGCGCGTG TGGATGAGCTACGGCCATATGCTCAAGACCGTGGGCCGTCAGGCCGATGGCGTCGCCGCCTATCGCCGCGCCATCGAACT CCTGCCGACGCTGGGAGAGGCGTGGTGGAGCCTTGCCAACCTCAAGACCGTGCGCTTCGACGATGCCGATATCGCAGCGA TGGAAGCCGCGCTGCGCGTTCCGGACCTTGCGCCGGAAGACCAGTGGCACCTCGATTTCGCGCTGGGCAAGGCGTTCGAG GATCGGGGTGAGGCGGAACGATCGTTTCGCCATTACGCCGCCGGCAATGCCCTGCGGAAGAAGCGCATGCCCTATCAGGC GGAAGAGATCACCGCGCAGGTCGACCGCGCTGTCGCCGCCTTCACGCCCGCCACGGTCGCCGGGCTTTCCGGCAAGGGGT GCGAGGCGGGCGATCCGATCTTCGTGCTTGGAATGCCGCGCGCGGGGTCGACCCTGGTCGAACAGATCCTGGCCAGCCAC TCGATGGTCGAAGGTACCAGCGAACTGGCCGACATCGGCTACCTTGCGCGGACCGTCGAGGGCTATCCAGCCGGTCTTTC GTCGTTGCAGGGCAATGACTTGCGAGCGCTAGGGGAGCAATACCTCGCGCGCACCCGCATCCAGCGGCATACCGACCGGC CACTGTTCGTCGACAAGATGCCGAACAACTGGATCCATGTCCCCTTCATCCGCGCGATCCTGCCCAACGCCAAGATCGTC GACGCCCGGCGCCATCCGCTTTCCTGTTGCTTTTCAAACTTCAAGCAGCACTTCGCGCGCGGGCAGGGGTTCAGCTACTC GCTCGAAGACATGGGCCGCTACTACCGCGACTACGTGCGCGCGATGGCTCATTTCGACAAGGTCATACCCGGGGCTGTCC ATCGCGTGATCTACGAGCGAATGGTCGAGGATACCGAGGCGGAAGTGCGTGCGCTGCTGGCATATTGCGGGCTGGCCTTC GAGGACAACTGCCTCGCCTTTCACCGGACCGAGCGGGCCGTCCGCACGGCCAGTTCCGAGCAGGTCCGCCAGCCCATCTT CAGGGACGGCACAGATGCGTGGAAGGCCTTTGAACCCTGGCTAGGTGAACTCAAGGTCGCGTTAGGTGCCGTTCAGGACT TCTACCCCGAAGCGCCTCCGTTCGACTGA
Upstream 100 bases:
>100_bases CCGCTTCCCTGCTGCATGGTCGCCCGTCCATTTGAAGTGGTTCGGCGCGATCGGTCCTGTGCATCGTGCGCAGACTAACG CTTGATCGCGAGGCGTCACC
Downstream 100 bases:
>100_bases ATTGGTGCGTGGCAATTTGGCCACGCTTCCCTCCTAACGTTCGTTTCAACTTGCAACCATCTTGACGATTGCGTGCGGCG CAGCGCAGCATTCGTTTGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 542; Mature: 542
Protein sequence:
>542_residues MFVMLAMANVTTSAPRAVAPAYDPRLVRAAVAMNENDLPTAEPLLRALLKDDPFDVRAIRLFAELAGRIGRYQDAENLLR RAIELAPQFTAARANLALVLYRTNRAPEALEELAKVTADDPENVGHANLQAAAYGRIGEFDEALALYEQVLKQAAAQPRV WMSYGHMLKTVGRQADGVAAYRRAIELLPTLGEAWWSLANLKTVRFDDADIAAMEAALRVPDLAPEDQWHLDFALGKAFE DRGEAERSFRHYAAGNALRKKRMPYQAEEITAQVDRAVAAFTPATVAGLSGKGCEAGDPIFVLGMPRAGSTLVEQILASH SMVEGTSELADIGYLARTVEGYPAGLSSLQGNDLRALGEQYLARTRIQRHTDRPLFVDKMPNNWIHVPFIRAILPNAKIV DARRHPLSCCFSNFKQHFARGQGFSYSLEDMGRYYRDYVRAMAHFDKVIPGAVHRVIYERMVEDTEAEVRALLAYCGLAF EDNCLAFHRTERAVRTASSEQVRQPIFRDGTDAWKAFEPWLGELKVALGAVQDFYPEAPPFD
Sequences:
>Translated_542_residues MFVMLAMANVTTSAPRAVAPAYDPRLVRAAVAMNENDLPTAEPLLRALLKDDPFDVRAIRLFAELAGRIGRYQDAENLLR RAIELAPQFTAARANLALVLYRTNRAPEALEELAKVTADDPENVGHANLQAAAYGRIGEFDEALALYEQVLKQAAAQPRV WMSYGHMLKTVGRQADGVAAYRRAIELLPTLGEAWWSLANLKTVRFDDADIAAMEAALRVPDLAPEDQWHLDFALGKAFE DRGEAERSFRHYAAGNALRKKRMPYQAEEITAQVDRAVAAFTPATVAGLSGKGCEAGDPIFVLGMPRAGSTLVEQILASH SMVEGTSELADIGYLARTVEGYPAGLSSLQGNDLRALGEQYLARTRIQRHTDRPLFVDKMPNNWIHVPFIRAILPNAKIV DARRHPLSCCFSNFKQHFARGQGFSYSLEDMGRYYRDYVRAMAHFDKVIPGAVHRVIYERMVEDTEAEVRALLAYCGLAF EDNCLAFHRTERAVRTASSEQVRQPIFRDGTDAWKAFEPWLGELKVALGAVQDFYPEAPPFD >Mature_542_residues MFVMLAMANVTTSAPRAVAPAYDPRLVRAAVAMNENDLPTAEPLLRALLKDDPFDVRAIRLFAELAGRIGRYQDAENLLR RAIELAPQFTAARANLALVLYRTNRAPEALEELAKVTADDPENVGHANLQAAAYGRIGEFDEALALYEQVLKQAAAQPRV WMSYGHMLKTVGRQADGVAAYRRAIELLPTLGEAWWSLANLKTVRFDDADIAAMEAALRVPDLAPEDQWHLDFALGKAFE DRGEAERSFRHYAAGNALRKKRMPYQAEEITAQVDRAVAAFTPATVAGLSGKGCEAGDPIFVLGMPRAGSTLVEQILASH SMVEGTSELADIGYLARTVEGYPAGLSSLQGNDLRALGEQYLARTRIQRHTDRPLFVDKMPNNWIHVPFIRAILPNAKIV DARRHPLSCCFSNFKQHFARGQGFSYSLEDMGRYYRDYVRAMAHFDKVIPGAVHRVIYERMVEDTEAEVRALLAYCGLAF EDNCLAFHRTERAVRTASSEQVRQPIFRDGTDAWKAFEPWLGELKVALGAVQDFYPEAPPFD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 8 TPR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000863 - InterPro: IPR001440 - InterPro: IPR011717 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00685 Sulfotransfer_1; PF00515 TPR_1; PF07721 TPR_4 [H]
EC number: NA
Molecular weight: Translated: 60312; Mature: 60312
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFVMLAMANVTTSAPRAVAPAYDPRLVRAAVAMNENDLPTAEPLLRALLKDDPFDVRAIR CEEEEEEHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHH LFAELAGRIGRYQDAENLLRRAIELAPQFTAARANLALVLYRTNRAPEALEELAKVTADD HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCC PENVGHANLQAAAYGRIGEFDEALALYEQVLKQAAAQPRVWMSYGHMLKTVGRQADGVAA CCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH YRRAIELLPTLGEAWWSLANLKTVRFDDADIAAMEAALRVPDLAPEDQWHLDFALGKAFE HHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH DRGEAERSFRHYAAGNALRKKRMPYQAEEITAQVDRAVAAFTPATVAGLSGKGCEAGDPI HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCE FVLGMPRAGSTLVEQILASHSMVEGTSELADIGYLARTVEGYPAGLSSLQGNDLRALGEQ EEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHH YLARTRIQRHTDRPLFVDKMPNNWIHVPFIRAILPNAKIVDARRHPLSCCFSNFKQHFAR HHHHHHHHHCCCCCEEEECCCCCEEEHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHC GQGFSYSLEDMGRYYRDYVRAMAHFDKVIPGAVHRVIYERMVEDTEAEVRALLAYCGLAF CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EDNCLAFHRTERAVRTASSEQVRQPIFRDGTDAWKAFEPWLGELKVALGAVQDFYPEAPP CCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC FD CC >Mature Secondary Structure MFVMLAMANVTTSAPRAVAPAYDPRLVRAAVAMNENDLPTAEPLLRALLKDDPFDVRAIR CEEEEEEHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHH LFAELAGRIGRYQDAENLLRRAIELAPQFTAARANLALVLYRTNRAPEALEELAKVTADD HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCC PENVGHANLQAAAYGRIGEFDEALALYEQVLKQAAAQPRVWMSYGHMLKTVGRQADGVAA CCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH YRRAIELLPTLGEAWWSLANLKTVRFDDADIAAMEAALRVPDLAPEDQWHLDFALGKAFE HHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH DRGEAERSFRHYAAGNALRKKRMPYQAEEITAQVDRAVAAFTPATVAGLSGKGCEAGDPI HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCE FVLGMPRAGSTLVEQILASHSMVEGTSELADIGYLARTVEGYPAGLSSLQGNDLRALGEQ EEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHH YLARTRIQRHTDRPLFVDKMPNNWIHVPFIRAILPNAKIVDARRHPLSCCFSNFKQHFAR HHHHHHHHHCCCCCEEEECCCCCEEEHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHC GQGFSYSLEDMGRYYRDYVRAMAHFDKVIPGAVHRVIYERMVEDTEAEVRALLAYCGLAF CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EDNCLAFHRTERAVRTASSEQVRQPIFRDGTDAWKAFEPWLGELKVALGAVQDFYPEAPP CCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC FD CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]