| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199640
Identifier: 87199640
GI number: 87199640
Start: 1696242
End: 1697762
Strand: Direct
Name: 87199640
Synonym: Saro_1623
Alternate gene names: NA
Gene position: 1696242-1697762 (Clockwise)
Preceding gene: 87199639
Following gene: 87199641
Centisome position: 47.63
GC content: 67.78
Gene sequence:
>1521_bases GTGAGATACATGCGTATCGCCCTCATTCTTTCGCTTTCGGCTTTTGCCGCAGTGCCGGCAGCCGCCCAGGACGCGCCCGC TCCGGCAGAGTCCGTCGAGCTATCCCGGGAAGCGACGCTTGCCTGGGCCGTACCCGTCCAACTTTCCGTGGAGCGTGACG GATATGAAGTCGTCGTCCGCTTCGACAAGCCGCTGGCCGAGGAAGAGATCGCGCGATTTGCCGCCGCGACCGGCCCTTAT CTGGCAGACCTCAGGTGGAACGACGACAGCCTCGTCATGCGGCCTGCCGAAGGCAGCAGCATAGCCATCGACCAGCAGGC CCGCTCGTTGAGCGTCCGCTTCGTCGAGGATGCACCGGTAGGAACGGCGACGGCGACCGTTACTTCCGACGCCGATGGCG AGATCGAGCTTGCGCTTGCCCGGGCCCAGGCCGATGCCGCCGCCGGTTATCCCGGCGAGGCGCGTCGGCGCCTCGAAGAA CTTGCACAGGCCCATCCCGGCGACGCCCGCGTCCAGCGCGCATTGGCCGACGCCGAGGCCGCCGAGGGTCGTACCCGCGA TGCCGCCGCGCGCTACCTCTCGCTCGCTGCGGATGATCCCATGGCCCGCCGGATCATCGGCGATGCAGGTGGCCGAGTGA CCGCAGGCACGATCTATCGCGATGGCAAGACCTTCTCGCAGTGGGAATCGGGCATCGACGTCAACGTGCCGGTCGGCGAA GGCCTGACCGCGGGCGCCGGCCTGCGCCATGTCCGCACGATCGTCGAATCCGTTGCAAGCGCCACCGGCTACCTGCCAAA GGTGACCCACAACCTGACCATCGCCGACGGCAACGCCAGCCTGCGCCTTGCCGATGCGGTGCGGATTACGGTCCTCGCCT CGGCACTGCTCGACCACGACGTCGTCGGTGCCGGCGCGCGGCTCGTGGCAGGGCCGCCCGAGCGCGAGGCGCGGCTCTAT GGCTCTTACCGTATGCCGGATTTCTCCACGGCCGAGCAGGCGGCATTTGGCGGGCACATGACCAGGATCGGGGCAGGGGG CACTTTTCGCCTGACGCCCGAAATCGTCGTGCAGGGCGATGCGGTTCTCAACCGCTATGGCCTGCCGGGCGGCGGCGTGC GCACCCGCACGACGCAGGTCCTCGCCGGGGTCGATGTCCTCGCGTTGCGCCGTCCTCTGTCGGTCCAGCTAAGCTACAGG CTGGACGCTGAATATGTCGGCCGGGTGGACCTGCGCCCCAATGGAACTCCCTTTATCCCGCTGTCCGACCGCGAGAACCA CACCGTCCAGGTCGTGATGAGCAAGTCCATCCGCAACGCCCAGGTCACCGCTGCGGGTGGTTGGACCAAGGACCGCTACG GCGGCGACGGTCCGACCGCCAGCGTCGGAGCGCTGTTCAATGTCGGCGATGCCTGGCGGATCGAGGCTGGCGGCGGAGTC AGCTCCATTTCCCGACCGGTGGTGTCCGGTCGGCAGTATTTCCTGCGCCTGTCGATCTCGCGCGCACTCGGGAGACGGTG A
Upstream 100 bases:
>100_bases TGCGCCGCGCCGCACCCGCCGACGCTCGGCTCAAGGCTGCCGCAGGCAGGTTGCTCGTCGCCGCAGGCGATCCCGGCAAG GCGCGCAAGGTGATGCAACC
Downstream 100 bases:
>100_bases TGCAAATCAAGTCGCTGCTGCTTGGCATTCCCCCCGCCGGAGAAAACGTCTCGCCCGGCATGCGCACATCCGGCCTTCGC CCGGCCAATGCTACCAGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 506; Mature: 506
Protein sequence:
>506_residues MRYMRIALILSLSAFAAVPAAAQDAPAPAESVELSREATLAWAVPVQLSVERDGYEVVVRFDKPLAEEEIARFAAATGPY LADLRWNDDSLVMRPAEGSSIAIDQQARSLSVRFVEDAPVGTATATVTSDADGEIELALARAQADAAAGYPGEARRRLEE LAQAHPGDARVQRALADAEAAEGRTRDAAARYLSLAADDPMARRIIGDAGGRVTAGTIYRDGKTFSQWESGIDVNVPVGE GLTAGAGLRHVRTIVESVASATGYLPKVTHNLTIADGNASLRLADAVRITVLASALLDHDVVGAGARLVAGPPEREARLY GSYRMPDFSTAEQAAFGGHMTRIGAGGTFRLTPEIVVQGDAVLNRYGLPGGGVRTRTTQVLAGVDVLALRRPLSVQLSYR LDAEYVGRVDLRPNGTPFIPLSDRENHTVQVVMSKSIRNAQVTAAGGWTKDRYGGDGPTASVGALFNVGDAWRIEAGGGV SSISRPVVSGRQYFLRLSISRALGRR
Sequences:
>Translated_506_residues MRYMRIALILSLSAFAAVPAAAQDAPAPAESVELSREATLAWAVPVQLSVERDGYEVVVRFDKPLAEEEIARFAAATGPY LADLRWNDDSLVMRPAEGSSIAIDQQARSLSVRFVEDAPVGTATATVTSDADGEIELALARAQADAAAGYPGEARRRLEE LAQAHPGDARVQRALADAEAAEGRTRDAAARYLSLAADDPMARRIIGDAGGRVTAGTIYRDGKTFSQWESGIDVNVPVGE GLTAGAGLRHVRTIVESVASATGYLPKVTHNLTIADGNASLRLADAVRITVLASALLDHDVVGAGARLVAGPPEREARLY GSYRMPDFSTAEQAAFGGHMTRIGAGGTFRLTPEIVVQGDAVLNRYGLPGGGVRTRTTQVLAGVDVLALRRPLSVQLSYR LDAEYVGRVDLRPNGTPFIPLSDRENHTVQVVMSKSIRNAQVTAAGGWTKDRYGGDGPTASVGALFNVGDAWRIEAGGGV SSISRPVVSGRQYFLRLSISRALGRR >Mature_506_residues MRYMRIALILSLSAFAAVPAAAQDAPAPAESVELSREATLAWAVPVQLSVERDGYEVVVRFDKPLAEEEIARFAAATGPY LADLRWNDDSLVMRPAEGSSIAIDQQARSLSVRFVEDAPVGTATATVTSDADGEIELALARAQADAAAGYPGEARRRLEE LAQAHPGDARVQRALADAEAAEGRTRDAAARYLSLAADDPMARRIIGDAGGRVTAGTIYRDGKTFSQWESGIDVNVPVGE GLTAGAGLRHVRTIVESVASATGYLPKVTHNLTIADGNASLRLADAVRITVLASALLDHDVVGAGARLVAGPPEREARLY GSYRMPDFSTAEQAAFGGHMTRIGAGGTFRLTPEIVVQGDAVLNRYGLPGGGVRTRTTQVLAGVDVLALRRPLSVQLSYR LDAEYVGRVDLRPNGTPFIPLSDRENHTVQVVMSKSIRNAQVTAAGGWTKDRYGGDGPTASVGALFNVGDAWRIEAGGGV SSISRPVVSGRQYFLRLSISRALGRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53608; Mature: 53608
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYMRIALILSLSAFAAVPAAAQDAPAPAESVELSREATLAWAVPVQLSVERDGYEVVVR CCCEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEEEEEEEEEEEECCCEEEEEE FDKPLAEEEIARFAAATGPYLADLRWNDDSLVMRPAEGSSIAIDQQARSLSVRFVEDAPV ECCCCCHHHHHHHHHCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCEEEEEEEECCCC GTATATVTSDADGEIELALARAQADAAAGYPGEARRRLEELAQAHPGDARVQRALADAEA CCEEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH AEGRTRDAAARYLSLAADDPMARRIIGDAGGRVTAGTIYRDGKTFSQWESGIDVNVPVGE HCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEEEECCCCHHHHHCCCEEECCCCC GLTAGAGLRHVRTIVESVASATGYLPKVTHNLTIADGNASLRLADAVRITVLASALLDHD CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHCH VVGAGARLVAGPPEREARLYGSYRMPDFSTAEQAAFGGHMTRIGAGGTFRLTPEIVVQGD HCCCCCEEECCCCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCEEEECCEEEEECC AVLNRYGLPGGGVRTRTTQVLAGVDVLALRRPLSVQLSYRLDAEYVGRVDLRPNGTPFIP HHHHHCCCCCCCCCHHHHHHHHCCHHEECCCCCEEEEEEEECHHHCEEEEECCCCCEEEE LSDRENHTVQVVMSKSIRNAQVTAAGGWTKDRYGGDGPTASVGALFNVGDAWRIEAGGGV CCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCHHHEEECCCEEEEECCCCH SSISRPVVSGRQYFLRLSISRALGRR HHHHHHHHCCCEEEEEEEEHHHHCCC >Mature Secondary Structure MRYMRIALILSLSAFAAVPAAAQDAPAPAESVELSREATLAWAVPVQLSVERDGYEVVVR CCCEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEEEEEEEEEEEECCCEEEEEE FDKPLAEEEIARFAAATGPYLADLRWNDDSLVMRPAEGSSIAIDQQARSLSVRFVEDAPV ECCCCCHHHHHHHHHCCCCEEEEEEECCCCEEEECCCCCEEEEECCCCEEEEEEEECCCC GTATATVTSDADGEIELALARAQADAAAGYPGEARRRLEELAQAHPGDARVQRALADAEA CCEEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH AEGRTRDAAARYLSLAADDPMARRIIGDAGGRVTAGTIYRDGKTFSQWESGIDVNVPVGE HCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEEEECCCCHHHHHCCCEEECCCCC GLTAGAGLRHVRTIVESVASATGYLPKVTHNLTIADGNASLRLADAVRITVLASALLDHD CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHCH VVGAGARLVAGPPEREARLYGSYRMPDFSTAEQAAFGGHMTRIGAGGTFRLTPEIVVQGD HCCCCCEEECCCCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCEEEECCEEEEECC AVLNRYGLPGGGVRTRTTQVLAGVDVLALRRPLSVQLSYRLDAEYVGRVDLRPNGTPFIP HHHHHCCCCCCCCCHHHHHHHHCCHHEECCCCCEEEEEEEECHHHCEEEEECCCCCEEEE LSDRENHTVQVVMSKSIRNAQVTAAGGWTKDRYGGDGPTASVGALFNVGDAWRIEAGGGV CCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCHHHEEECCCEEEEECCCCH SSISRPVVSGRQYFLRLSISRALGRR HHHHHHHHCCCEEEEEEEEHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA