| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199621
Identifier: 87199621
GI number: 87199621
Start: 1671027
End: 1672568
Strand: Direct
Name: 87199621
Synonym: Saro_1604
Alternate gene names: NA
Gene position: 1671027-1672568 (Clockwise)
Preceding gene: 87199620
Following gene: 87199622
Centisome position: 46.92
GC content: 67.38
Gene sequence:
>1542_bases ATGGACGAGGGTGAGGTCAGGCGGATCGTGATCGTCGGCGGCGGGACCGCCGGCTGGCTGTCGGCCTGCTTCCTTGCCGC GGAATTGCGTTCGCGCAGGGTCGACGTCTCGATAACCCTGATCGAGGCACCCGACATTCCCACGATCGGCGTGGGCGAGG GGACCTGGCCGACGATGCGCGGTACCTTGCGCGCCATCGGCATCGCAGAGGACAATTTCCTTGCCGCCTGCGATGCCTCG TTCAAACAGGGATCGGTCTTCTCCGGTTGGGTCACCGGAGAGCCGGGGGACCGGTACCAGCATCCGTTCACGCCACCACC CGCCGGGGCGCTCGACGACATCGTCGCGGCCTGGGCGGGCAGGGGCGACCAGCCTTTCGCAAGCGCAATGACCGCGCAGG CGGCGGTGATCGACCGGGACCTTGCGCCGCGCCAGCCGAACATGCCGTTCTATGCCGGCGCCCTGAACTACGCCTACCAC CTCGACGCCGGAAAGTTCGCCGCACTTCTTTCCTCCCGTGCGACCGGACACCTTGGCGTCACCCACGTCCGCGATCGTGT CCGCAACACGGTCGCGGACGACAGGGGGCATCTGCTGGCGGTGGAACTGGCCTCTGGCGACCGGGTCGAGGGCGATCTCT TCATCGATTGTTCGGGCCATGCCGCGCTGCTGATTGGCGGCGCCTGCGGCGTCCCCTTCATTGACCGCAGCGACGTCCTG CTCAATGATCGCGCGCTCGCGGCGCAAGTGTCCGTGCAGCCGGGCACGCCGGTAGCTTCTGCCACCGTCGCAACCGCACA CCGCGCCGGCTGGCTGTGGGACATCGGGCTTCCCGGCAGGCGCGGCATCGGCTGCGTCTATTCATCCCGCTTCCTGTCCG ACGACGATGCGCTGGCAGTGCTGCGCGCCTATGTCTCGGCAAACGTCCCGGGCGCAGATCCTGCGGCGGTAGAGCCTCGG CGCATCGCCTTTCCGACCGGGCACAGGGAGCGTTTCTGGCATGGCAACTGCATCGCCATTGGCCTTTCGGCGGGCTTTCT CGAACCGCTCGAGGCCTCGGCCATCGTGATGATCGAGCTTTCACTCCGAGCGCTGGCCGAGAATTTCCCCCGCCAGCGCC AGGCCATGCCGTTCCTCGCCGGCCGCTTCAACGACCTGTTTCGCTATCGCTGGGACCGGGTGATCGAGTTCCTCAAGCTT CACTACCTGCTCTCGAAGCGGCAGGAGCCCTACTGGCAGGCACAGCGCGATCCGGCCGCTGTGCCGCAGAGGTTGGCCGA ACTTGTCGCGCTCTGGCGTCACCAGCCGCCGAGCGCATGGGATTTCCCGCAGGTGGACGAGATATTCTCGGCCGAGAGCC ATGCCTACATTCTCTATGGCATGGGCTTTCCACCGCCTGCCTCCACCGCGCGCGATCCGCTTGCCGCCCGCGCGCTAGAT GACGTGGCGCAGCGCACCCGCGCCTTGTGTGCCGCGCTGCCGACGAACCGCAGCTACCTGTCTTCCCTCATGCCCGCGCA AGGAGCCGCCGCCCTCCCATGA
Upstream 100 bases:
>100_bases GGACGGGTTGATAACGTTCCTGCGGAGTGGGAGAAGGTCGGACCGGTGGTCCGGCCAATCCTGCCGGACAACCGGCACAA CGATAAAGTGACTATGGGCG
Downstream 100 bases:
>100_bases GCCAGCACGCCGTCCTCGACAGCCTCTCCCACCGCGACCTGCGCGTCCGTACCGAGCGTTCCGCGGCGCTGGGCGATGCG GTTATGGCCTGCCTTGTCAT
Product: tryptophan halogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 513; Mature: 513
Protein sequence:
>513_residues MDEGEVRRIVIVGGGTAGWLSACFLAAELRSRRVDVSITLIEAPDIPTIGVGEGTWPTMRGTLRAIGIAEDNFLAACDAS FKQGSVFSGWVTGEPGDRYQHPFTPPPAGALDDIVAAWAGRGDQPFASAMTAQAAVIDRDLAPRQPNMPFYAGALNYAYH LDAGKFAALLSSRATGHLGVTHVRDRVRNTVADDRGHLLAVELASGDRVEGDLFIDCSGHAALLIGGACGVPFIDRSDVL LNDRALAAQVSVQPGTPVASATVATAHRAGWLWDIGLPGRRGIGCVYSSRFLSDDDALAVLRAYVSANVPGADPAAVEPR RIAFPTGHRERFWHGNCIAIGLSAGFLEPLEASAIVMIELSLRALAENFPRQRQAMPFLAGRFNDLFRYRWDRVIEFLKL HYLLSKRQEPYWQAQRDPAAVPQRLAELVALWRHQPPSAWDFPQVDEIFSAESHAYILYGMGFPPPASTARDPLAARALD DVAQRTRALCAALPTNRSYLSSLMPAQGAAALP
Sequences:
>Translated_513_residues MDEGEVRRIVIVGGGTAGWLSACFLAAELRSRRVDVSITLIEAPDIPTIGVGEGTWPTMRGTLRAIGIAEDNFLAACDAS FKQGSVFSGWVTGEPGDRYQHPFTPPPAGALDDIVAAWAGRGDQPFASAMTAQAAVIDRDLAPRQPNMPFYAGALNYAYH LDAGKFAALLSSRATGHLGVTHVRDRVRNTVADDRGHLLAVELASGDRVEGDLFIDCSGHAALLIGGACGVPFIDRSDVL LNDRALAAQVSVQPGTPVASATVATAHRAGWLWDIGLPGRRGIGCVYSSRFLSDDDALAVLRAYVSANVPGADPAAVEPR RIAFPTGHRERFWHGNCIAIGLSAGFLEPLEASAIVMIELSLRALAENFPRQRQAMPFLAGRFNDLFRYRWDRVIEFLKL HYLLSKRQEPYWQAQRDPAAVPQRLAELVALWRHQPPSAWDFPQVDEIFSAESHAYILYGMGFPPPASTARDPLAARALD DVAQRTRALCAALPTNRSYLSSLMPAQGAAALP >Mature_513_residues MDEGEVRRIVIVGGGTAGWLSACFLAAELRSRRVDVSITLIEAPDIPTIGVGEGTWPTMRGTLRAIGIAEDNFLAACDAS FKQGSVFSGWVTGEPGDRYQHPFTPPPAGALDDIVAAWAGRGDQPFASAMTAQAAVIDRDLAPRQPNMPFYAGALNYAYH LDAGKFAALLSSRATGHLGVTHVRDRVRNTVADDRGHLLAVELASGDRVEGDLFIDCSGHAALLIGGACGVPFIDRSDVL LNDRALAAQVSVQPGTPVASATVATAHRAGWLWDIGLPGRRGIGCVYSSRFLSDDDALAVLRAYVSANVPGADPAAVEPR RIAFPTGHRERFWHGNCIAIGLSAGFLEPLEASAIVMIELSLRALAENFPRQRQAMPFLAGRFNDLFRYRWDRVIEFLKL HYLLSKRQEPYWQAQRDPAAVPQRLAELVALWRHQPPSAWDFPQVDEIFSAESHAYILYGMGFPPPASTARDPLAARALD DVAQRTRALCAALPTNRSYLSSLMPAQGAAALP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006905 [H]
Pfam domain/function: PF04820 Trp_halogenase [H]
EC number: NA
Molecular weight: Translated: 55422; Mature: 55422
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDEGEVRRIVIVGGGTAGWLSACFLAAELRSRRVDVSITLIEAPDIPTIGVGEGTWPTMR CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCEEEEEEEEEECCCCCEECCCCCCCCHHH GTLRAIGIAEDNFLAACDASFKQGSVFSGWVTGEPGDRYQHPFTPPPAGALDDIVAAWAG CCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCC RGDQPFASAMTAQAAVIDRDLAPRQPNMPFYAGALNYAYHLDAGKFAALLSSRATGHLGV CCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEECCHHHHHHHHCCCCCCCCH THVRDRVRNTVADDRGHLLAVELASGDRVEGDLFIDCSGHAALLIGGACGVPFIDRSDVL HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCEE LNDRALAAQVSVQPGTPVASATVATAHRAGWLWDIGLPGRRGIGCVYSSRFLSDDDALAV ECCCEEEEEEEECCCCCCCHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHH LRAYVSANVPGADPAAVEPRRIAFPTGHRERFWHGNCIAIGLSAGFLEPLEASAIVMIEL HHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEECCCEEEEEECCCCCCCCCCCEEEEEEE SLRALAENFPRQRQAMPFLAGRFNDLFRYRWDRVIEFLKLHYLLSKRQEPYWQAQRDPAA HHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHH VPQRLAELVALWRHQPPSAWDFPQVDEIFSAESHAYILYGMGFPPPASTARDPLAARALD HHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH DVAQRTRALCAALPTNRSYLSSLMPAQGAAALP HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC >Mature Secondary Structure MDEGEVRRIVIVGGGTAGWLSACFLAAELRSRRVDVSITLIEAPDIPTIGVGEGTWPTMR CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCEEEEEEEEEECCCCCEECCCCCCCCHHH GTLRAIGIAEDNFLAACDASFKQGSVFSGWVTGEPGDRYQHPFTPPPAGALDDIVAAWAG CCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCC RGDQPFASAMTAQAAVIDRDLAPRQPNMPFYAGALNYAYHLDAGKFAALLSSRATGHLGV CCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEECCHHHHHHHHCCCCCCCCH THVRDRVRNTVADDRGHLLAVELASGDRVEGDLFIDCSGHAALLIGGACGVPFIDRSDVL HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCEE LNDRALAAQVSVQPGTPVASATVATAHRAGWLWDIGLPGRRGIGCVYSSRFLSDDDALAV ECCCEEEEEEEECCCCCCCHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHH LRAYVSANVPGADPAAVEPRRIAFPTGHRERFWHGNCIAIGLSAGFLEPLEASAIVMIEL HHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEECCCEEEEEECCCCCCCCCCCEEEEEEE SLRALAENFPRQRQAMPFLAGRFNDLFRYRWDRVIEFLKLHYLLSKRQEPYWQAQRDPAA HHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHH VPQRLAELVALWRHQPPSAWDFPQVDEIFSAESHAYILYGMGFPPPASTARDPLAARALD HHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH DVAQRTRALCAALPTNRSYLSSLMPAQGAAALP HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]