| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is phnC [H]
Identifier: 87199567
GI number: 87199567
Start: 1605381
End: 1606103
Strand: Direct
Name: phnC [H]
Synonym: Saro_1550
Alternate gene names: 87199567
Gene position: 1605381-1606103 (Clockwise)
Preceding gene: 87199566
Following gene: 87199568
Centisome position: 45.07
GC content: 65.15
Gene sequence:
>723_bases ATGAGCCGTGCAGGCCTGTCCATCAGCGTTGCCGCAATGACCCTGCGTCACGCCAACGGCACTGTCGCGCTCGATCGTGT GTCCCTTGAACTTGGCGAAGGATCGATTTGCGCGATCATGGGAGCCTCCGGTTCCGGAAAATCCAGTCTGCTTGCGGCAA TCGGCGGGCGAGCCATGGCCTGTCAGGGGCGGATACTGCTCGGCGGCACCCTGCTTCTTCCGCAGACCTTGCCCGGATTG CGCCCAATGATCGGACAGGTCTACCAGGATCATCGTCTGGTCCGGCAATCGTCGGTCCTCGCCAACGTCCTGGCCGGTGC GGCGGCGACACTGCCCCTCTGGCGCGTGCTGACGGATCGCTATCCGACCGATCTGGTCGAGCGGGCGGGGTATTTGCTCG ACCTGCTCGGCCTCGATGAATCCTTCCTGTCGCGGCGGCTGGATTCACTTTCTGGAGGCCAGGCACAGCGGGTGGGCATC GCACGTGCCCTGATCGGCGGCCCGCGCCTGATTTTGGCGGATGAGCCCGTGGCCAGCCTTGACCCGCCAACGGCACTGCG GGCACTCCGAGCAATCTCCAGCGTCGCGCGCGAGACAGGCGCAACCGTGGTGTGCGCGCTGCACCAGCCCGACCTTGCGG CGTCATTCGCCCAAAGGATCATTCATCTTCAGAAGGGCCGCATCGTCTCGGCCGACGGTTCCGTCGGAAGAGACGCGGCA TGA
Upstream 100 bases:
>100_bases ACACCGCGCACGTCAACGAAAGGGCCTTCGACGATCTGGCAGTCAGGCTTGCTCCCGTGACCGGCGAACGCGTCGCGGCA ATTCTCCGGCGGACAGACAG
Downstream 100 bases:
>100_bases CCTCTAGCGCGAACGCCCGCCCCATTTCGCGGCGTCTTGTGGTGATGCTTTCGCTCCTGATCTTTGCTGCGTTCAGCGCC CCGCGCATGGACCTAGGCCG
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 240; Mature: 239
Protein sequence:
>240_residues MSRAGLSISVAAMTLRHANGTVALDRVSLELGEGSICAIMGASGSGKSSLLAAIGGRAMACQGRILLGGTLLLPQTLPGL RPMIGQVYQDHRLVRQSSVLANVLAGAAATLPLWRVLTDRYPTDLVERAGYLLDLLGLDESFLSRRLDSLSGGQAQRVGI ARALIGGPRLILADEPVASLDPPTALRALRAISSVARETGATVVCALHQPDLAASFAQRIIHLQKGRIVSADGSVGRDAA
Sequences:
>Translated_240_residues MSRAGLSISVAAMTLRHANGTVALDRVSLELGEGSICAIMGASGSGKSSLLAAIGGRAMACQGRILLGGTLLLPQTLPGL RPMIGQVYQDHRLVRQSSVLANVLAGAAATLPLWRVLTDRYPTDLVERAGYLLDLLGLDESFLSRRLDSLSGGQAQRVGI ARALIGGPRLILADEPVASLDPPTALRALRAISSVARETGATVVCALHQPDLAASFAQRIIHLQKGRIVSADGSVGRDAA >Mature_239_residues SRAGLSISVAAMTLRHANGTVALDRVSLELGEGSICAIMGASGSGKSSLLAAIGGRAMACQGRILLGGTLLLPQTLPGLR PMIGQVYQDHRLVRQSSVLANVLAGAAATLPLWRVLTDRYPTDLVERAGYLLDLLGLDESFLSRRLDSLSGGQAQRVGIA RALIGGPRLILADEPVASLDPPTALRALRAISSVARETGATVVCALHQPDLAASFAQRIIHLQKGRIVSADGSVGRDAA
Specific function: Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system [H]
COG id: COG3638
COG function: function code P; ABC-type phosphate/phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27881501, Length=222, Percent_Identity=28.3783783783784, Blast_Score=77, Evalue=9e-15, Organism=Homo sapiens, GI30795238, Length=222, Percent_Identity=28.3783783783784, Blast_Score=77, Evalue=9e-15, Organism=Homo sapiens, GI46592915, Length=206, Percent_Identity=30.5825242718447, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI46592964, Length=206, Percent_Identity=30.5825242718447, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI46592956, Length=206, Percent_Identity=30.5825242718447, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI46592971, Length=206, Percent_Identity=30.5825242718447, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI46592898, Length=206, Percent_Identity=30.5825242718447, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI46592978, Length=206, Percent_Identity=30.5825242718447, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI215820660, Length=173, Percent_Identity=30.0578034682081, Blast_Score=74, Evalue=8e-14, Organism=Homo sapiens, GI20143975, Length=173, Percent_Identity=30.0578034682081, Blast_Score=74, Evalue=8e-14, Organism=Homo sapiens, GI21536376, Length=233, Percent_Identity=24.4635193133047, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI31657092, Length=222, Percent_Identity=24.7747747747748, Blast_Score=64, Evalue=9e-11, Organism=Homo sapiens, GI105990541, Length=211, Percent_Identity=24.1706161137441, Blast_Score=64, Evalue=9e-11, Organism=Homo sapiens, GI9955968, Length=220, Percent_Identity=28.6363636363636, Blast_Score=64, Evalue=1e-10, Organism=Escherichia coli, GI1790544, Length=225, Percent_Identity=37.7777777777778, Blast_Score=131, Evalue=4e-32, Organism=Escherichia coli, GI87081791, Length=213, Percent_Identity=34.2723004694836, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI87081834, Length=222, Percent_Identity=34.2342342342342, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1786398, Length=214, Percent_Identity=33.6448598130841, Blast_Score=101, Evalue=3e-23, Organism=Escherichia coli, GI1788225, Length=226, Percent_Identity=34.070796460177, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1789873, Length=222, Percent_Identity=33.7837837837838, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=33.0316742081448, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1789672, Length=237, Percent_Identity=30.379746835443, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1788450, Length=208, Percent_Identity=33.1730769230769, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1787089, Length=214, Percent_Identity=32.2429906542056, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787370, Length=217, Percent_Identity=29.0322580645161, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1786872, Length=193, Percent_Identity=35.2331606217617, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI1788761, Length=240, Percent_Identity=30.4166666666667, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI1787500, Length=211, Percent_Identity=30.3317535545024, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787105, Length=210, Percent_Identity=36.1904761904762, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790467, Length=221, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1787164, Length=215, Percent_Identity=32.5581395348837, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1787712, Length=211, Percent_Identity=30.8056872037915, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789891, Length=219, Percent_Identity=31.5068493150685, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI87082268, Length=217, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788644, Length=235, Percent_Identity=32.3404255319149, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87081709, Length=224, Percent_Identity=27.6785714285714, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786563, Length=207, Percent_Identity=32.8502415458937, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI87082267, Length=226, Percent_Identity=28.3185840707965, Blast_Score=77, Evalue=7e-16, Organism=Escherichia coli, GI1789864, Length=233, Percent_Identity=26.6094420600858, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI48995001, Length=213, Percent_Identity=30.0469483568075, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1786803, Length=223, Percent_Identity=29.1479820627803, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786253, Length=203, Percent_Identity=30.5418719211823, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1786981, Length=197, Percent_Identity=35.0253807106599, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1789032, Length=215, Percent_Identity=31.6279069767442, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1786703, Length=210, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1786345, Length=223, Percent_Identity=27.8026905829596, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI48994997, Length=230, Percent_Identity=29.1304347826087, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787758, Length=217, Percent_Identity=26.2672811059908, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788472, Length=222, Percent_Identity=27.4774774774775, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788210, Length=212, Percent_Identity=29.2452830188679, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1790739, Length=224, Percent_Identity=29.0178571428571, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789962, Length=212, Percent_Identity=29.7169811320755, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1790162, Length=222, Percent_Identity=27.9279279279279, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI145693107, Length=211, Percent_Identity=29.8578199052133, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1787112, Length=227, Percent_Identity=30.8370044052863, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788053, Length=161, Percent_Identity=32.9192546583851, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787143, Length=177, Percent_Identity=32.2033898305085, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788506, Length=221, Percent_Identity=28.9592760180996, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI48994943, Length=208, Percent_Identity=29.8076923076923, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787547, Length=231, Percent_Identity=25.1082251082251, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1787759, Length=246, Percent_Identity=28.0487804878049, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786975, Length=214, Percent_Identity=28.5046728971963, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788897, Length=165, Percent_Identity=33.9393939393939, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789593, Length=214, Percent_Identity=27.5700934579439, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71992285, Length=229, Percent_Identity=28.3842794759825, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI212646699, Length=209, Percent_Identity=27.7511961722488, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115534520, Length=226, Percent_Identity=26.5486725663717, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17555936, Length=204, Percent_Identity=27.4509803921569, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71996809, Length=208, Percent_Identity=28.8461538461538, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193211015, Length=208, Percent_Identity=28.8461538461538, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193211017, Length=208, Percent_Identity=28.8461538461538, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115533608, Length=232, Percent_Identity=27.1551724137931, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71984940, Length=204, Percent_Identity=28.4313725490196, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25146777, Length=207, Percent_Identity=30.4347826086957, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI86563255, Length=210, Percent_Identity=27.6190476190476, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17558664, Length=208, Percent_Identity=26.9230769230769, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193208177, Length=197, Percent_Identity=29.4416243654822, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=233, Percent_Identity=30.0429184549356, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6323959, Length=225, Percent_Identity=30.6666666666667, Blast_Score=70, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6324398, Length=234, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6319856, Length=233, Percent_Identity=27.0386266094421, Blast_Score=66, Evalue=6e-12, Organism=Drosophila melanogaster, GI28574533, Length=176, Percent_Identity=34.6590909090909, Blast_Score=85, Evalue=3e-17, Organism=Drosophila melanogaster, GI161076682, Length=203, Percent_Identity=32.512315270936, Blast_Score=84, Evalue=6e-17, Organism=Drosophila melanogaster, GI161076684, Length=203, Percent_Identity=32.512315270936, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24581617, Length=203, Percent_Identity=32.512315270936, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24581615, Length=203, Percent_Identity=32.512315270936, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI19920532, Length=178, Percent_Identity=34.2696629213483, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24580930, Length=178, Percent_Identity=34.2696629213483, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI85725262, Length=216, Percent_Identity=30.0925925925926, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24650853, Length=211, Percent_Identity=29.8578199052133, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI85816269, Length=197, Percent_Identity=29.9492385786802, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24580553, Length=197, Percent_Identity=29.9492385786802, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI85724864, Length=197, Percent_Identity=29.9492385786802, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24580555, Length=197, Percent_Identity=29.9492385786802, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24581191, Length=188, Percent_Identity=30.3191489361702, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24581189, Length=188, Percent_Identity=30.3191489361702, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24581193, Length=188, Percent_Identity=30.3191489361702, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24581195, Length=188, Percent_Identity=30.3191489361702, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI281362751, Length=185, Percent_Identity=32.4324324324324, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI24650855, Length=211, Percent_Identity=29.8578199052133, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI85724858, Length=211, Percent_Identity=28.9099526066351, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI85724856, Length=211, Percent_Identity=28.9099526066351, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24580547, Length=211, Percent_Identity=28.9099526066351, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24580551, Length=211, Percent_Identity=28.9099526066351, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24580549, Length=211, Percent_Identity=28.9099526066351, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24580545, Length=211, Percent_Identity=28.9099526066351, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI17647959, Length=206, Percent_Identity=30.0970873786408, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574744, Length=204, Percent_Identity=28.921568627451, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI24666092, Length=202, Percent_Identity=28.7128712871287, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI85726357, Length=218, Percent_Identity=28.4403669724771, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24659289, Length=209, Percent_Identity=26.7942583732057, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI28571871, Length=224, Percent_Identity=27.6785714285714, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR012693 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.28 [H]
Molecular weight: Translated: 24928; Mature: 24797
Theoretical pI: Translated: 10.17; Mature: 10.17
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRAGLSISVAAMTLRHANGTVALDRVSLELGEGSICAIMGASGSGKSSLLAAIGGRAMA CCCCCCEEEEEEEEEECCCCEEEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHCCCEEE CQGRILLGGTLLLPQTLPGLRPMIGQVYQDHRLVRQSSVLANVLAGAAATLPLWRVLTDR ECCEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC YPTDLVERAGYLLDLLGLDESFLSRRLDSLSGGQAQRVGIARALIGGPRLILADEPVASL CCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCC DPPTALRALRAISSVARETGATVVCALHQPDLAASFAQRIIHLQKGRIVSADGSVGRDAA CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCC >Mature Secondary Structure SRAGLSISVAAMTLRHANGTVALDRVSLELGEGSICAIMGASGSGKSSLLAAIGGRAMA CCCCCEEEEEEEEEECCCCEEEEEEEEEEECCCCEEEEEECCCCCHHHHHHHHCCCEEE CQGRILLGGTLLLPQTLPGLRPMIGQVYQDHRLVRQSSVLANVLAGAAATLPLWRVLTDR ECCEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC YPTDLVERAGYLLDLLGLDESFLSRRLDSLSGGQAQRVGIARALIGGPRLILADEPVASL CCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCC DPPTALRALRAISSVARETGATVVCALHQPDLAASFAQRIIHLQKGRIVSADGSVGRDAA CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA