Click here to switch to the map view.

The map label for this gene is fdx [C]

Identifier: 87199497

GI number: 87199497

Start: 1519205

End: 1519567

Strand: Reverse

Name: fdx [C]

Synonym: Saro_1477

Alternate gene names: 87199497

Gene position: 1519567-1519205 (Counterclockwise)

Preceding gene: 87199498

Following gene: 87199496

Centisome position: 42.67

GC content: 61.71

Gene sequence:

>363_bases
TTGCGCGCTGACTGCATACCCCTTCACTCTAAGCAGGATCCCCCCTTGACTGCTATCCTTGTTACAACACGCGACGGCAC
GCGCACCGAAATCCAAGCTGAGCCCGGACTCAGCCTCATGGAAGCCCTGCGCGATGCCGGCATCGACGAACTGCTTGCCC
TGTGCGGTGGATGCTGTTCGTGCGCCACGTGCCATGTGCTCGTCGCCCCCGCCTTTGCCGACAGGCTACCGGCGTTGTCG
GGCGACGAAAACGACCTACTCGACAGTTCCGACCACCGCACGCCGCATTCCCGTCTGTCGTGCCAGATTACCATCAACGA
CAAGCTCGAAGGCCTCGAAGTCGAGATCGCGCCCGAAGACTGA

Upstream 100 bases:

>100_bases
CTCAAGCGTATTCCCGAGTTCAGCTTCAAGGAAGGCGAAACGCCTATCTACCATTCCGGCATCGTCGCCGCTGTCGAGAA
CGTGCCGCTGGTCTGGCCGA

Downstream 100 bases:

>100_bases
AAAAAGCAAGAATTCAAAACGAGAGGAATGAGCATGTTGGGACGTGCATCGGTGCTGGTAAAACCGAACCAACTGGAGAC
TTGGGACGTCAAAGTCGCCG

Product: ferredoxin

Products: NA

Alternate protein names: Ferredoxin VI; FdVI [H]

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MRADCIPLHSKQDPPLTAILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALS
GDENDLLDSSDHRTPHSRLSCQITINDKLEGLEVEIAPED

Sequences:

>Translated_120_residues
MRADCIPLHSKQDPPLTAILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALS
GDENDLLDSSDHRTPHSRLSCQITINDKLEGLEVEIAPED
>Mature_120_residues
MRADCIPLHSKQDPPLTAILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALS
GDENDLLDSSDHRTPHSRLSCQITINDKLEGLEVEIAPED

Specific function: Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions [H]

COG id: COG0633

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17544202, Length=106, Percent_Identity=33.9622641509434, Blast_Score=65, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6325004, Length=110, Percent_Identity=33.6363636363636, Blast_Score=69, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24661503, Length=109, Percent_Identity=33.9449541284404, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001055
- InterPro:   IPR018298
- InterPro:   IPR012675
- InterPro:   IPR001041 [H]

Pfam domain/function: PF00111 Fer2 [H]

EC number: NA

Molecular weight: Translated: 12851; Mature: 12851

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
5.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRADCIPLHSKQDPPLTAILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCS
CCCCCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCHHHHHHHHHCCHHHHHHHHCCHHH
CATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPHSRLSCQITINDKLEGLEVEIAPED
HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCC
>Mature Secondary Structure
MRADCIPLHSKQDPPLTAILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCS
CCCCCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCHHHHHHHHHCCHHHHHHHHCCHHH
CATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPHSRLSCQITINDKLEGLEVEIAPED
HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 2Fe-2S Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8026503; 11173487 [H]