| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is ucpA [C]
Identifier: 87199495
GI number: 87199495
Start: 1517212
End: 1518012
Strand: Direct
Name: ucpA [C]
Synonym: Saro_1475
Alternate gene names: 87199495
Gene position: 1517212-1518012 (Clockwise)
Preceding gene: 87199494
Following gene: 87199499
Centisome position: 42.6
GC content: 54.31
Gene sequence:
>801_bases ATGGGCAATCGACTAGATGGCAAGGTGTGCATCGTAACCGGTTCCGGCAGTGGCATGGGACGGGCTAGCGCAATGGAAAT GGCACGGCAGGGAGGCCGCGTTGTTGTCACTGACATCAACACCAGTGCCGGCGAGGAAACTGTCGAGGCGATCCGGGCCG AAAAGGGCGATGCAATCTTCATCGCCTGCAACTTGCGCAAGGCGCACGAAATCAAAGTACTGATGCAAAAAACTGCCGAC CATTTTGGCGGCATCGATGTGCTGCATAACAATGCCGCGATTCATGAAACTGATTTAACTGACAAGACTTCGATCGAGGA TTTGCCCGAGGAGATCTGGGATGCAGTTTATGAAGTCAACCTGAAGGCACTGTGGCTGACTACGCGCTATGCAGTGCCTT GGTTAAAGCTTTCCAAGGGTGCCGCGATTGTCAATGTCGCTTCAACAGGATCCTTTGTTTCCTATCCTCAAGCTGGTGCT TATTGCGCAACCAAAGGCGGCGTACTGTTATTGACCAAGGCGACCGCCGTCGACCTTGCGAAGTACGGAATTCGCTGCAA TTGCTACTGTCCGGGTGCGATCGAGACTCCGATGCTACAGAAGTATCTCGATGCAGCCGAAGACAAGAAGGCAATCATGT CGGTCCTTACCGGGGCGCATCTGATACCGCGTTTGGGCAAGCCTGAGGAAGTTGCCAAGCTTGCCTGCTTCCTTGCATCG GACGATTCCAGCTTTATCAACGGTGCATCTTACGTGATCGACGGCGGCACGCTGGCCTGGCGTGGCCAGCGAGTTGACTG A
Upstream 100 bases:
>100_bases CACCCTCGCGATGTGCAGGCAGGATCATTGGGCGCCGTTGGGAGCGGCGCCTTTATTGCGTGGTCACCACCTGGCGTCCA AGCCGAAGGAGAGGAAATTG
Downstream 100 bases:
>100_bases ATCTGGGGCATTTGGTGCAAGAGAAAGACCCCGTCGCCAAAGCGACGGGGTCTTTCTCTTGGGTTAGCTTGGACCTTCAG GTGATCGTCGGATCGATCAC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MGNRLDGKVCIVTGSGSGMGRASAMEMARQGGRVVVTDINTSAGEETVEAIRAEKGDAIFIACNLRKAHEIKVLMQKTAD HFGGIDVLHNNAAIHETDLTDKTSIEDLPEEIWDAVYEVNLKALWLTTRYAVPWLKLSKGAAIVNVASTGSFVSYPQAGA YCATKGGVLLLTKATAVDLAKYGIRCNCYCPGAIETPMLQKYLDAAEDKKAIMSVLTGAHLIPRLGKPEEVAKLACFLAS DDSSFINGASYVIDGGTLAWRGQRVD
Sequences:
>Translated_266_residues MGNRLDGKVCIVTGSGSGMGRASAMEMARQGGRVVVTDINTSAGEETVEAIRAEKGDAIFIACNLRKAHEIKVLMQKTAD HFGGIDVLHNNAAIHETDLTDKTSIEDLPEEIWDAVYEVNLKALWLTTRYAVPWLKLSKGAAIVNVASTGSFVSYPQAGA YCATKGGVLLLTKATAVDLAKYGIRCNCYCPGAIETPMLQKYLDAAEDKKAIMSVLTGAHLIPRLGKPEEVAKLACFLAS DDSSFINGASYVIDGGTLAWRGQRVD >Mature_265_residues GNRLDGKVCIVTGSGSGMGRASAMEMARQGGRVVVTDINTSAGEETVEAIRAEKGDAIFIACNLRKAHEIKVLMQKTADH FGGIDVLHNNAAIHETDLTDKTSIEDLPEEIWDAVYEVNLKALWLTTRYAVPWLKLSKGAAIVNVASTGSFVSYPQAGAY CATKGGVLLLTKATAVDLAKYGIRCNCYCPGAIETPMLQKYLDAAEDKKAIMSVLTGAHLIPRLGKPEEVAKLACFLASD DSSFINGASYVIDGGTLAWRGQRVD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=33.9920948616601, Blast_Score=137, Evalue=1e-32, Organism=Homo sapiens, GI66933014, Length=258, Percent_Identity=32.9457364341085, Blast_Score=127, Evalue=9e-30, Organism=Homo sapiens, GI15277342, Length=263, Percent_Identity=32.6996197718631, Blast_Score=125, Evalue=4e-29, Organism=Homo sapiens, GI59889578, Length=226, Percent_Identity=33.1858407079646, Blast_Score=123, Evalue=2e-28, Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=30.1587301587302, Blast_Score=114, Evalue=6e-26, Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=32.4427480916031, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=29.2490118577075, Blast_Score=105, Evalue=5e-23, Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=30.9236947791165, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI31542939, Length=204, Percent_Identity=28.921568627451, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI4504505, Length=200, Percent_Identity=34.5, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=32.6424870466321, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=31.3513513513514, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI224922801, Length=178, Percent_Identity=27.5280898876405, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI25282469, Length=262, Percent_Identity=27.0992366412214, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI4503301, Length=262, Percent_Identity=30.1526717557252, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI4758504, Length=261, Percent_Identity=27.5862068965517, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI7705925, Length=260, Percent_Identity=27.3076923076923, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI142976729, Length=201, Percent_Identity=28.8557213930348, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI209862901, Length=210, Percent_Identity=23.8095238095238, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI19923983, Length=210, Percent_Identity=23.8095238095238, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI40807363, Length=198, Percent_Identity=26.2626262626263, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI40254986, Length=269, Percent_Identity=26.7657992565056, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI302344755, Length=106, Percent_Identity=35.8490566037736, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI210032110, Length=196, Percent_Identity=28.0612244897959, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI83715985, Length=261, Percent_Identity=26.0536398467433, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=31.5175097276265, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI1790717, Length=254, Percent_Identity=29.9212598425197, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1789208, Length=258, Percent_Identity=32.5581395348837, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1787905, Length=253, Percent_Identity=28.8537549407115, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1787335, Length=254, Percent_Identity=28.740157480315, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=28.740157480315, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=28.0632411067194, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1789378, Length=255, Percent_Identity=29.8039215686275, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=29.6442687747036, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=27.906976744186, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1789057, Length=262, Percent_Identity=25.1908396946565, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787526, Length=253, Percent_Identity=23.7154150197628, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787820, Length=217, Percent_Identity=24.8847926267281, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI2367365, Length=251, Percent_Identity=25.8964143426295, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=34.8837209302326, Blast_Score=128, Evalue=2e-30, Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=32.6693227091633, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17560150, Length=274, Percent_Identity=33.5766423357664, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=31.496062992126, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17562906, Length=281, Percent_Identity=31.3167259786477, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=33.4600760456274, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=35.7142857142857, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17562990, Length=275, Percent_Identity=34.1818181818182, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI25147288, Length=264, Percent_Identity=32.5757575757576, Blast_Score=110, Evalue=7e-25, Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=32.4427480916031, Blast_Score=110, Evalue=8e-25, Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=34.2105263157895, Blast_Score=110, Evalue=9e-25, Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=31.4393939393939, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17563726, Length=269, Percent_Identity=33.0855018587361, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17562904, Length=273, Percent_Identity=34.0659340659341, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=30.9433962264151, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI193204405, Length=280, Percent_Identity=30.3571428571429, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=30.8300395256917, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=30.3703703703704, Blast_Score=104, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17555706, Length=260, Percent_Identity=32.3076923076923, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=30.0751879699248, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17565030, Length=277, Percent_Identity=31.0469314079422, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17568967, Length=219, Percent_Identity=32.4200913242009, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=29.5880149812734, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17564282, Length=199, Percent_Identity=31.1557788944724, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17544670, Length=269, Percent_Identity=27.8810408921933, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17560220, Length=271, Percent_Identity=29.1512915129151, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17538182, Length=259, Percent_Identity=27.7992277992278, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI193203117, Length=198, Percent_Identity=30.3030303030303, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17536651, Length=260, Percent_Identity=29.2307692307692, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI193203115, Length=195, Percent_Identity=30.7692307692308, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=29.5719844357977, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17567345, Length=198, Percent_Identity=28.2828282828283, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17561272, Length=255, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17508651, Length=258, Percent_Identity=28.6821705426357, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115534694, Length=250, Percent_Identity=24.8, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17508895, Length=195, Percent_Identity=25.6410256410256, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17555612, Length=213, Percent_Identity=28.169014084507, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71982365, Length=198, Percent_Identity=24.7474747474747, Blast_Score=68, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=256, Percent_Identity=26.5625, Blast_Score=83, Evalue=5e-17, Organism=Saccharomyces cerevisiae, GI6322861, Length=267, Percent_Identity=28.4644194756554, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=216, Percent_Identity=26.8518518518519, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=34.9019607843137, Blast_Score=138, Evalue=4e-33, Organism=Drosophila melanogaster, GI21355319, Length=257, Percent_Identity=32.295719844358, Blast_Score=135, Evalue=2e-32, Organism=Drosophila melanogaster, GI21357041, Length=257, Percent_Identity=34.6303501945525, Blast_Score=128, Evalue=4e-30, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=33.4661354581673, Blast_Score=125, Evalue=3e-29, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=34.1269841269841, Blast_Score=121, Evalue=4e-28, Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=34.2412451361868, Blast_Score=121, Evalue=5e-28, Organism=Drosophila melanogaster, GI24644337, Length=204, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=9e-19, Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=29.5719844357977, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI24643142, Length=258, Percent_Identity=29.4573643410853, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI21355631, Length=165, Percent_Identity=32.1212121212121, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI18859837, Length=257, Percent_Identity=28.4046692607004, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI161076933, Length=200, Percent_Identity=30, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI24584748, Length=200, Percent_Identity=30, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI24640492, Length=165, Percent_Identity=30.3030303030303, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24649181, Length=164, Percent_Identity=29.8780487804878, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI281364892, Length=182, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24580925, Length=218, Percent_Identity=25.2293577981651, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI21357673, Length=197, Percent_Identity=23.8578680203046, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28443; Mature: 28312
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNRLDGKVCIVTGSGSGMGRASAMEMARQGGRVVVTDINTSAGEETVEAIRAEKGDAIF CCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCEEE IACNLRKAHEIKVLMQKTADHFGGIDVLHNNAAIHETDLTDKTSIEDLPEEIWDAVYEVN EEECCCCHHHHHHHHHHHHHHHCCEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHHHCC LKALWLTTRYAVPWLKLSKGAAIVNVASTGSFVSYPQAGAYCATKGGVLLLTKATAVDLA EEEEEEEEECCCCEEEECCCCEEEEEECCCCEECCCCCCCEEECCCCEEEEEEHHHHHHH KYGIRCNCYCPGAIETPMLQKYLDAAEDKKAIMSVLTGAHLIPRLGKPEEVAKLACFLAS HHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEEC DDSSFINGASYVIDGGTLAWRGQRVD CCCCCCCCCEEEEECCEEEECCCCCC >Mature Secondary Structure GNRLDGKVCIVTGSGSGMGRASAMEMARQGGRVVVTDINTSAGEETVEAIRAEKGDAIF CCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCEEE IACNLRKAHEIKVLMQKTADHFGGIDVLHNNAAIHETDLTDKTSIEDLPEEIWDAVYEVN EEECCCCHHHHHHHHHHHHHHHCCEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHHHCC LKALWLTTRYAVPWLKLSKGAAIVNVASTGSFVSYPQAGAYCATKGGVLLLTKATAVDLA EEEEEEEEECCCCEEEECCCCEEEEEECCCCEECCCCCCCEEECCCCEEEEEEHHHHHHH KYGIRCNCYCPGAIETPMLQKYLDAAEDKKAIMSVLTGAHLIPRLGKPEEVAKLACFLAS HHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEEC DDSSFINGASYVIDGGTLAWRGQRVD CCCCCCCCCEEEEECCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9655913; 12597275 [H]