| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is fyuA [H]
Identifier: 87199494
GI number: 87199494
Start: 1514632
End: 1517085
Strand: Direct
Name: fyuA [H]
Synonym: Saro_1474
Alternate gene names: 87199494
Gene position: 1514632-1517085 (Clockwise)
Preceding gene: 87199493
Following gene: 87199495
Centisome position: 42.53
GC content: 57.05
Gene sequence:
>2454_bases ATGAAGAGTCCAATCTTGAATCGCACGCGCCGTTCCTGTCTGCTAATGACATCGGCGCTTGTTTCGCTTTCATGCGTTCT CGTTGTTTCGCCTGCGATGGCGGCAGATGAGCCCCAGGCTGCAAGCACAACCGAGGATATCGTCGTCACTGCGCGTCGTA CGTCGGAAAAGCTGTCTAATGTGCCGGTGTCGGTAGCTGCGATCGGAGCCAAAGCGCTTGAGGAAAAGCGCATCCTGACC GACGCTGACCTTCAGTCTGCTACACCGGGCCTCACCGTGCGCCAGACCAACTCGTCGAACCAGATCAGTTTCTCGCTGCG TGGCCAGTCGGTTGATGCATTCTCGTTCGCTGCGCCTGCCGTGCTGAACTACGTCAATGAATTCAACGCCCAATCGACAT CGGCAAGCGCATTCTTTGACCTCACTTCGATCCAGGCGCTCAAAGGTCCGCAGGGCACCTTGTTCGGACGCAACGCCACC GGTGGTGCGGTTCTCTATGAAACTCGAAAGCCCGACACCGATTTCGGCGGTTATATGAGGCTGAGCTACGGCAACTACGA CGCCAAGTTCGCCGAAGGTGCAATCAACATCCCGGGCGAGATTATTTCCGGGCGTCTCGCGGCGCAGTATCAGAAGCGTG ATGGCTACCAGCGCAACTTGCTGCTGGGCATCCGCAACGGATCAGTCGACACGTTTAGTGTGCGCCCGACCATCCAGATC GAAACTGGCGGTTTCAAGAACGCTACGGTCTATCAATACAATTATTCAGGTGGTTACAGCACAAGCTTGCGCGCCACCAA CTACTACGGCGTTGCCGGCAGTTCCGGCGCGGCGGGCGACCCGCTGAACAACTTCGTCAATGGTAAACCCGTCAACCTGT CTCTGAACTATGGCCTTCCATCTGCCACACTGTACCCCGATGGCATTGCCGCGCTGCTCCAGGGTGGCGAGCGTTTCGCA AGGTTTGGTTTCAGTGGCCTTCCCAGCTTCATCGAAGCGCAGAAGAATTTTGGCTTCTACGACGTGTTTGACGATCAGGA CGGAGCGCACCTAAGTCGCCAGCATCTGGTCACCAATACCACGACGTACGAATTGTCGGACGAGATGCAGATCAAGAATA TCTTCGGCTACAACCATTCGCGTTCGCGCGACCGTACGGACGTTGACGGTACGCCGTTTGACCCGCTTCAGATCGGATTC GGCGGAGGTACGGGGCCGGCAAACCCGGGTGATCCGGCAGTCGGGGGCCGATCTGCCGAGGGTTACACCTATGTGTCGCA GCAGCTGTCCAACGAACTCCAGATTTCCGGCAAGACTGGTAACCTGAAGTACATTGCAGGTCTCTACTACTTCGAGGGCA AGGACTATCAACGTCTCGCGCTCACCTTTGCGCCAGACTATTCGGCGGCGCTGGGCGATACACTTGGTTTTTTTCTGCGA GAATATACGAACAAGACCACATCGAAAGGTGCTTATGCCCAGTTCACATATGGTCTGACCCCCGAACTGAATGTTACAGC GGGCGGTCGCTGGACCTGGGAAAAATCGAGGTACACGCCAATGGACCGCGTGGCCGGTTCGTTTGACGTATTCCAAGACG ACTTCAACACCAGTCTCGGTATCACCGGGGGCACGTTGAAGGCCAACAAGCCAAGCTGGAACGTCTCGGTAGACTACAAG ATAACCCCTTCGTTGCTGGTCTACGCGGCCCAGCGCGGTTCTTGGCGCACGGGCGGTTTCAACGGCACTGCATCGAGCGT TGATGCTGCCGGCAACCCGATCCCGAACTCGTTCAAGCCAGAGACGACCTACGACTTTGAGCTGGGTGCCAAATTCAACG GTCGCATCGGCGACATGCCGGCGACCATGAATGTGGCGGTTTACAACCAGAACATCAAGAATGTCATCCGGGCGATTTAC CTTGGCGTGGCGGCGGTTAGCGGCAATGTTGAAGAAGCAAGGGTTCGCGGTGTTGAAGCGGACCTCTCCATCCGCCCCAC TGACTGGCTTCAGTTGGGCGGTACGCTCGCCTACACAGATGCCAAGTATACCAAGAACACGGCAACTGTAGGTACCACCG TGGTGAAGTTCGGCCCCTACGGCGACGTTCCCAAGTGGTCGGGTTCGGCATTCGCCAAAGTCGAGCATGAACTGGGCGAT GGCAGCGTGGCCTCGCTGCGGGGCGACGTCTACGCGCAGTCGAGCTTCTACTATTCCAATGCAGCAAACACGATTCTGCC AAGAACGCAGATCGATGGATACGCACTGGTCGACCTGCGCGCCGAATGGGGCAGGATCGGAGGTTCCGACATTTCAGTTT CGGCTTACGTGAAGAACCTGACAGACAAGAAGTACAACACCGGCGGCTTTGCGCTGGGTGCGGTCAACGCGATCAACTCC GTCCTGCCGGGACTTCCGCGCATGTATGGTCTGGAAGCCAAGGTCGAGTTCTAA
Upstream 100 bases:
>100_bases TCCGCGCCTCTTGTGTCAACAACTGGGTTGACGAGGCGCTTGCAAGGTGAGTGCGCTCAGCTATGCCCCGCAGAGGGCTT AATTTTTGGGGAGGTTTTAG
Downstream 100 bases:
>100_bases GCGGTTCCGCGAGGGTGGCCGTGTGCCACCCTCGCGATGTGCAGGCAGGATCATTGGGCGCCGTTGGGAGCGGCGCCTTT ATTGCGTGGTCACCACCTGG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 817; Mature: 817
Protein sequence:
>817_residues MKSPILNRTRRSCLLMTSALVSLSCVLVVSPAMAADEPQAASTTEDIVVTARRTSEKLSNVPVSVAAIGAKALEEKRILT DADLQSATPGLTVRQTNSSNQISFSLRGQSVDAFSFAAPAVLNYVNEFNAQSTSASAFFDLTSIQALKGPQGTLFGRNAT GGAVLYETRKPDTDFGGYMRLSYGNYDAKFAEGAINIPGEIISGRLAAQYQKRDGYQRNLLLGIRNGSVDTFSVRPTIQI ETGGFKNATVYQYNYSGGYSTSLRATNYYGVAGSSGAAGDPLNNFVNGKPVNLSLNYGLPSATLYPDGIAALLQGGERFA RFGFSGLPSFIEAQKNFGFYDVFDDQDGAHLSRQHLVTNTTTYELSDEMQIKNIFGYNHSRSRDRTDVDGTPFDPLQIGF GGGTGPANPGDPAVGGRSAEGYTYVSQQLSNELQISGKTGNLKYIAGLYYFEGKDYQRLALTFAPDYSAALGDTLGFFLR EYTNKTTSKGAYAQFTYGLTPELNVTAGGRWTWEKSRYTPMDRVAGSFDVFQDDFNTSLGITGGTLKANKPSWNVSVDYK ITPSLLVYAAQRGSWRTGGFNGTASSVDAAGNPIPNSFKPETTYDFELGAKFNGRIGDMPATMNVAVYNQNIKNVIRAIY LGVAAVSGNVEEARVRGVEADLSIRPTDWLQLGGTLAYTDAKYTKNTATVGTTVVKFGPYGDVPKWSGSAFAKVEHELGD GSVASLRGDVYAQSSFYYSNAANTILPRTQIDGYALVDLRAEWGRIGGSDISVSAYVKNLTDKKYNTGGFALGAVNAINS VLPGLPRMYGLEAKVEF
Sequences:
>Translated_817_residues MKSPILNRTRRSCLLMTSALVSLSCVLVVSPAMAADEPQAASTTEDIVVTARRTSEKLSNVPVSVAAIGAKALEEKRILT DADLQSATPGLTVRQTNSSNQISFSLRGQSVDAFSFAAPAVLNYVNEFNAQSTSASAFFDLTSIQALKGPQGTLFGRNAT GGAVLYETRKPDTDFGGYMRLSYGNYDAKFAEGAINIPGEIISGRLAAQYQKRDGYQRNLLLGIRNGSVDTFSVRPTIQI ETGGFKNATVYQYNYSGGYSTSLRATNYYGVAGSSGAAGDPLNNFVNGKPVNLSLNYGLPSATLYPDGIAALLQGGERFA RFGFSGLPSFIEAQKNFGFYDVFDDQDGAHLSRQHLVTNTTTYELSDEMQIKNIFGYNHSRSRDRTDVDGTPFDPLQIGF GGGTGPANPGDPAVGGRSAEGYTYVSQQLSNELQISGKTGNLKYIAGLYYFEGKDYQRLALTFAPDYSAALGDTLGFFLR EYTNKTTSKGAYAQFTYGLTPELNVTAGGRWTWEKSRYTPMDRVAGSFDVFQDDFNTSLGITGGTLKANKPSWNVSVDYK ITPSLLVYAAQRGSWRTGGFNGTASSVDAAGNPIPNSFKPETTYDFELGAKFNGRIGDMPATMNVAVYNQNIKNVIRAIY LGVAAVSGNVEEARVRGVEADLSIRPTDWLQLGGTLAYTDAKYTKNTATVGTTVVKFGPYGDVPKWSGSAFAKVEHELGD GSVASLRGDVYAQSSFYYSNAANTILPRTQIDGYALVDLRAEWGRIGGSDISVSAYVKNLTDKKYNTGGFALGAVNAINS VLPGLPRMYGLEAKVEF >Mature_817_residues MKSPILNRTRRSCLLMTSALVSLSCVLVVSPAMAADEPQAASTTEDIVVTARRTSEKLSNVPVSVAAIGAKALEEKRILT DADLQSATPGLTVRQTNSSNQISFSLRGQSVDAFSFAAPAVLNYVNEFNAQSTSASAFFDLTSIQALKGPQGTLFGRNAT GGAVLYETRKPDTDFGGYMRLSYGNYDAKFAEGAINIPGEIISGRLAAQYQKRDGYQRNLLLGIRNGSVDTFSVRPTIQI ETGGFKNATVYQYNYSGGYSTSLRATNYYGVAGSSGAAGDPLNNFVNGKPVNLSLNYGLPSATLYPDGIAALLQGGERFA RFGFSGLPSFIEAQKNFGFYDVFDDQDGAHLSRQHLVTNTTTYELSDEMQIKNIFGYNHSRSRDRTDVDGTPFDPLQIGF GGGTGPANPGDPAVGGRSAEGYTYVSQQLSNELQISGKTGNLKYIAGLYYFEGKDYQRLALTFAPDYSAALGDTLGFFLR EYTNKTTSKGAYAQFTYGLTPELNVTAGGRWTWEKSRYTPMDRVAGSFDVFQDDFNTSLGITGGTLKANKPSWNVSVDYK ITPSLLVYAAQRGSWRTGGFNGTASSVDAAGNPIPNSFKPETTYDFELGAKFNGRIGDMPATMNVAVYNQNIKNVIRAIY LGVAAVSGNVEEARVRGVEADLSIRPTDWLQLGGTLAYTDAKYTKNTATVGTTVVKFGPYGDVPKWSGSAFAKVEHELGD GSVASLRGDVYAQSSFYYSNAANTILPRTQIDGYALVDLRAEWGRIGGSDISVSAYVKNLTDKKYNTGGFALGAVNAINS VLPGLPRMYGLEAKVEF
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 87907; Mature: 87907
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSPILNRTRRSCLLMTSALVSLSCVLVVSPAMAADEPQAASTTEDIVVTARRTSEKLSN CCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCEEEEEEEHHHHHHHC VPVSVAAIGAKALEEKRILTDADLQSATPGLTVRQTNSSNQISFSLRGQSVDAFSFAAPA CCEEEEHHCHHHHHHHHCCCCCCHHHCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHH VLNYVNEFNAQSTSASAFFDLTSIQALKGPQGTLFGRNATGGAVLYETRKPDTDFGGYMR HHHHHHHHCCCCCCCCEEEEHHHHHHHCCCCCEEEECCCCCCEEEEECCCCCCCCCCEEE LSYGNYDAKFAEGAINIPGEIISGRLAAQYQKRDGYQRNLLLGIRNGSVDTFSVRPTIQI EEECCCCCHHCCCCCCCCHHHHCCHHHHHHHHCCCCCCEEEEEEECCCEEEEEECEEEEE ETGGFKNATVYQYNYSGGYSTSLRATNYYGVAGSSGAAGDPLNNFVNGKPVNLSLNYGLP ECCCCCCCEEEEEECCCCCCCEEEECEEEECCCCCCCCCCCHHHCCCCCEEEEEEECCCC SATLYPDGIAALLQGGERFARFGFSGLPSFIEAQKNFGFYDVFDDQDGAHLSRQHLVTNT CCEECCHHHHHHHHCCHHHHHCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCEEEECC TTYELSDEMQIKNIFGYNHSRSRDRTDVDGTPFDPLQIGFGGGTGPANPGDPAVGGRSAE EEEEECCCEEEEHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC GYTYVSQQLSNELQISGKTGNLKYIAGLYYFEGKDYQRLALTFAPDYSAALGDTLGFFLR CHHHHHHHCCCCEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHH EYTNKTTSKGAYAQFTYGLTPELNVTAGGRWTWEKSRYTPMDRVAGSFDVFQDDFNTSLG HHCCCCCCCCCEEEEEECCCCCEEEECCCEEEECCCCCCCHHHHCCCHHHHHCCCCCCCC ITGGTLKANKPSWNVSVDYKITPSLLVYAAQRGSWRTGGFNGTASSVDAAGNPIPNSFKP CCCCEEECCCCCEEEEEEEEECCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCC ETTYDFELGAKFNGRIGDMPATMNVAVYNQNIKNVIRAIYLGVAAVSGNVEEARVRGVEA CCEEEEEECCEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHEECCCHHHHHHCCCCC DLSIRPTDWLQLGGTLAYTDAKYTKNTATVGTTVVKFGPYGDVPKWSGSAFAKVEHELGD CCEECCCHHHHCCCEEEEECCCCCCCCEEECEEEEEECCCCCCCCCCCCEEEEEEHHCCC GSVASLRGDVYAQSSFYYSNAANTILPRTQIDGYALVDLRAEWGRIGGSDISVSAYVKNL CCEEEECCCEEEECEEEECCCCCCCCCCCCCCCEEEEEEEHHHCCCCCCCEEHHHHHHHC TDKKYNTGGFALGAVNAINSVLPGLPRMYGLEAKVEF CCCCCCCCCEEEHHHHHHHHHHCCCCHHHCCEEEECC >Mature Secondary Structure MKSPILNRTRRSCLLMTSALVSLSCVLVVSPAMAADEPQAASTTEDIVVTARRTSEKLSN CCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCEEEEEEEHHHHHHHC VPVSVAAIGAKALEEKRILTDADLQSATPGLTVRQTNSSNQISFSLRGQSVDAFSFAAPA CCEEEEHHCHHHHHHHHCCCCCCHHHCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHH VLNYVNEFNAQSTSASAFFDLTSIQALKGPQGTLFGRNATGGAVLYETRKPDTDFGGYMR HHHHHHHHCCCCCCCCEEEEHHHHHHHCCCCCEEEECCCCCCEEEEECCCCCCCCCCEEE LSYGNYDAKFAEGAINIPGEIISGRLAAQYQKRDGYQRNLLLGIRNGSVDTFSVRPTIQI EEECCCCCHHCCCCCCCCHHHHCCHHHHHHHHCCCCCCEEEEEEECCCEEEEEECEEEEE ETGGFKNATVYQYNYSGGYSTSLRATNYYGVAGSSGAAGDPLNNFVNGKPVNLSLNYGLP ECCCCCCCEEEEEECCCCCCCEEEECEEEECCCCCCCCCCCHHHCCCCCEEEEEEECCCC SATLYPDGIAALLQGGERFARFGFSGLPSFIEAQKNFGFYDVFDDQDGAHLSRQHLVTNT CCEECCHHHHHHHHCCHHHHHCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCEEEECC TTYELSDEMQIKNIFGYNHSRSRDRTDVDGTPFDPLQIGFGGGTGPANPGDPAVGGRSAE EEEEECCCEEEEHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC GYTYVSQQLSNELQISGKTGNLKYIAGLYYFEGKDYQRLALTFAPDYSAALGDTLGFFLR CHHHHHHHCCCCEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHH EYTNKTTSKGAYAQFTYGLTPELNVTAGGRWTWEKSRYTPMDRVAGSFDVFQDDFNTSLG HHCCCCCCCCCEEEEEECCCCCEEEECCCEEEECCCCCCCHHHHCCCHHHHHCCCCCCCC ITGGTLKANKPSWNVSVDYKITPSLLVYAAQRGSWRTGGFNGTASSVDAAGNPIPNSFKP CCCCEEECCCCCEEEEEEEEECCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCC ETTYDFELGAKFNGRIGDMPATMNVAVYNQNIKNVIRAIYLGVAAVSGNVEEARVRGVEA CCEEEEEECCEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHEECCCHHHHHHCCCCC DLSIRPTDWLQLGGTLAYTDAKYTKNTATVGTTVVKFGPYGDVPKWSGSAFAKVEHELGD CCEECCCHHHHCCCEEEEECCCCCCCCEEECEEEEEECCCCCCCCCCCCEEEEEEHHCCC GSVASLRGDVYAQSSFYYSNAANTILPRTQIDGYALVDLRAEWGRIGGSDISVSAYVKNL CCEEEECCCEEEECEEEECCCCCCCCCCCCCCCEEEEEEEHHHCCCCCCCEEHHHHHHHC TDKKYNTGGFALGAVNAINSVLPGLPRMYGLEAKVEF CCCCCCCCCEEEHHHHHHHHHHCCCCHHHCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA