| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is zraS [C]
Identifier: 87199467
GI number: 87199467
Start: 1489693
End: 1492128
Strand: Direct
Name: zraS [C]
Synonym: Saro_1446
Alternate gene names: 87199467
Gene position: 1489693-1492128 (Clockwise)
Preceding gene: 87199466
Following gene: 87199473
Centisome position: 41.83
GC content: 63.42
Gene sequence:
>2436_bases ATGGCGTCACGCGGGGGCGACACGGCCGCCGGTCCGTCCGGCCTGGCGCCGATGCGGGACTGGCTCCTGCTGGGCGGCGC GGTTTCGGCTAGTGCTGTGGTCCTGTGGAACGCATCGGGCCAGCCGCTCGTCGCCGCAGGCTTCGTTGGCGGCGTAGCGG CCATTGGCGCGGCGATTCGACTGTTCCTGCGACCTGCTCAGGCCGAGTCCTCTCCGGAGTTTGCGTTACCCGATTGGTCG GTGACCAATGCCGCGATCGAGCAATCCAACGATGGCATCGCAATCACGGATCGCGCCGGTCGGTTGGTCTGCGCCAATGC GCTGATGAGCAACTGGTTCGGTCTTTCCGCAGTACCGCCCCGCCTTCCGCTCGATCGCGAAGCGGTCGATGCACTGGAAG CCGCAACCCGGGCGGCCTGGCGCGACGGCACCGCGACCGCCGAGCCATTGGTCTCCTCCAATGGCACCTGGCGTGCCGAA GTCCGCCGAGCCGGACGGGGCGAGGATTTCCTGATCTGGCGTTTCATGCCGGTTGCCACCCAGGACCTCGTTGCCGAAAT AGTCGGGCAGATCGGGGGCAAGCTTGGACGGGCGCTGGCGCGCGAAGGCATCCAGGCGGCCGTGGTCTCTCCGGAAGGTA TCGTGCTTTCGGCAAATCCGGCGTTCGTTCAGCGAGCTACCGGCAACGGATCAGCAGACGTCGTTGGCGCGGATTTCGTC TCGTTTCTTGCAAGCGACGAGACCGAGCGTGTCTACTATGCGCGCGAAGGGCGAAAGGGCGCGTCGATCCGGCTGGTTCA CCTGCCGGTGGCCGATCCCGATGGCGTTGCCAACGTCGACCCCGCCCGAACGACTTCACTGTTCCTGCTGATCGACGAAC AGGGTAGCGTTGGTGAAGTGCGCGCAGGCCTTCCGCAGATCGAGGCGCTGCTTGCCAGATTGCCCCTCGGGCTTGCCATG ACGGACCGCGATGGCCGGTTCCTCTTCGCCAATGCCGCGTTCCTGCGTGCTGCCGGTCACGACGACACGATCCCGCCGCC ATATCCGTCGGACCTGGTCATCAAGGAAGACAAGGGGGCCCTGTCCGACGCCGTGCGGCGCTACGCGCAGGGTATTCCGA TGGCCGGCGACGTTGCGGTACGGCTTCGGGCTACGCCCGAGGAGCCCGTTTCACTGAGCCTTGCAGGCGTGCGCGGCTTG GGGGAAGGGGCGGTTCTGCTGAGTCTCAAGGACTCGTCCGAGGAAACCCGCCTCAAGCGCGAAATTGCGCAGGCGACGAA GATGCAGGCCGTGGGCCAACTCGCTGGCGGCGTCGCCCATGATTTCAACAACGTGCTGACTGCCATCATCGGCTATTGCG ATCTCATGCTGATGCGGCACACGCCCGGTGACAGCGACTACGATGACATCCAACAGGTCAAGGCCAACTCGAACCGCGCC GCTTCTTTGACGCGCCAGTTGCTGGCCTTCTCGCGCCAGCAGACCTTGCGTCCGCAGGTGCTCCAGCTTCCCGATGTCGT CGCCGAGGTATCGGCCCTGCTCAAGCGGCTTATCGGGGAAAAGATCACGCTTGAGGTGACCCACGACAGAGACCTCGGCT TCGTGCGTGCAGATCCGACGCAACTCGAACAGGTATTGCTCAACCTTGTCGTGAATGCCCGCGATGCCATCAACGACAAG TTGGCGGCACCTGGCGCGAAGGGCAGTGGCGTGGTCAAGCTGATGACCCGAAGAGTGACTGCGGCCGACGTCCGGTCGAT GAAAAGCGAGATACTTCCGATCGGTGATTACACGGCGCTCATCGTCGAGGACAACGGTCACGGCATCAAGCCAGGGCAGA TTGGCAAGATCTTCGAACCGTTTTTCACAACAAAGGAGAAAGGCAAGGGCACTGGCCTCGGCCTTTCCACCGTCTATGGC ATCGTGAAGCAATCAGGCGGGTTCATTTTCGCGGAAAGTGAGGTCGACAGGTTCACGCGGTTCAGCATCTACCTGCCTGT TCATGTTCCTGACGCTGCGGAGATCGCGCACGCCAGGCGACCGGCGCACGAAGCAAAGCGCGAGTGGGCCGGTGGCGGGC GAGTGCTGCTGGTCGAAGACGAGGACACCGTTCGGGCCGTTGCCGAACGCGCACTGACCCGGCAAGGCTATGAGGTGACC ACCGCCGCCGACGGCGAGGAAGGCTTGGAGGCCATCGGGCGTGACGGTGATTTCGACCTCGTCGTGTCGGATGTTGTCAT GCCGACGATGGACGGTCCCGCGATGGCGCGTGAAATTCGCGCGCTGCGTCCGTCAATGCCTTTTCTCTTCATGTCGGGAT ATGCCGAAGAGCAGTTAAGGCGCGAGATCGACATTCCGAACATGCACTTCCTGGCAAAGCCATTTTCTGTCCAACAGATA TGCGAGGCGGTCGAACAGGTCCTGCGAGCGCGCTGA
Upstream 100 bases:
>100_bases CCATCGGTTACTTCATCTCGGCTATCGGGTGGCGCTGGTGGACGGGGCACAAGCGCAAGGCCCGGCAGATGCGTGCCGCT GCCCGGGATTTCCCCGACTG
Downstream 100 bases:
>100_bases GTTCCGTTGCGAACGGGTCAGGTTGCGCGCTGGCAAAAGCGCGCTGGCTAAAACACGCTGCCTGCACCGCTACCTTTGCG CGTATTCGTCCAACTTGCTG
Product: multi-sensor hybrid histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 811; Mature: 810
Protein sequence:
>811_residues MASRGGDTAAGPSGLAPMRDWLLLGGAVSASAVVLWNASGQPLVAAGFVGGVAAIGAAIRLFLRPAQAESSPEFALPDWS VTNAAIEQSNDGIAITDRAGRLVCANALMSNWFGLSAVPPRLPLDREAVDALEAATRAAWRDGTATAEPLVSSNGTWRAE VRRAGRGEDFLIWRFMPVATQDLVAEIVGQIGGKLGRALAREGIQAAVVSPEGIVLSANPAFVQRATGNGSADVVGADFV SFLASDETERVYYAREGRKGASIRLVHLPVADPDGVANVDPARTTSLFLLIDEQGSVGEVRAGLPQIEALLARLPLGLAM TDRDGRFLFANAAFLRAAGHDDTIPPPYPSDLVIKEDKGALSDAVRRYAQGIPMAGDVAVRLRATPEEPVSLSLAGVRGL GEGAVLLSLKDSSEETRLKREIAQATKMQAVGQLAGGVAHDFNNVLTAIIGYCDLMLMRHTPGDSDYDDIQQVKANSNRA ASLTRQLLAFSRQQTLRPQVLQLPDVVAEVSALLKRLIGEKITLEVTHDRDLGFVRADPTQLEQVLLNLVVNARDAINDK LAAPGAKGSGVVKLMTRRVTAADVRSMKSEILPIGDYTALIVEDNGHGIKPGQIGKIFEPFFTTKEKGKGTGLGLSTVYG IVKQSGGFIFAESEVDRFTRFSIYLPVHVPDAAEIAHARRPAHEAKREWAGGGRVLLVEDEDTVRAVAERALTRQGYEVT TAADGEEGLEAIGRDGDFDLVVSDVVMPTMDGPAMAREIRALRPSMPFLFMSGYAEEQLRREIDIPNMHFLAKPFSVQQI CEAVEQVLRAR
Sequences:
>Translated_811_residues MASRGGDTAAGPSGLAPMRDWLLLGGAVSASAVVLWNASGQPLVAAGFVGGVAAIGAAIRLFLRPAQAESSPEFALPDWS VTNAAIEQSNDGIAITDRAGRLVCANALMSNWFGLSAVPPRLPLDREAVDALEAATRAAWRDGTATAEPLVSSNGTWRAE VRRAGRGEDFLIWRFMPVATQDLVAEIVGQIGGKLGRALAREGIQAAVVSPEGIVLSANPAFVQRATGNGSADVVGADFV SFLASDETERVYYAREGRKGASIRLVHLPVADPDGVANVDPARTTSLFLLIDEQGSVGEVRAGLPQIEALLARLPLGLAM TDRDGRFLFANAAFLRAAGHDDTIPPPYPSDLVIKEDKGALSDAVRRYAQGIPMAGDVAVRLRATPEEPVSLSLAGVRGL GEGAVLLSLKDSSEETRLKREIAQATKMQAVGQLAGGVAHDFNNVLTAIIGYCDLMLMRHTPGDSDYDDIQQVKANSNRA ASLTRQLLAFSRQQTLRPQVLQLPDVVAEVSALLKRLIGEKITLEVTHDRDLGFVRADPTQLEQVLLNLVVNARDAINDK LAAPGAKGSGVVKLMTRRVTAADVRSMKSEILPIGDYTALIVEDNGHGIKPGQIGKIFEPFFTTKEKGKGTGLGLSTVYG IVKQSGGFIFAESEVDRFTRFSIYLPVHVPDAAEIAHARRPAHEAKREWAGGGRVLLVEDEDTVRAVAERALTRQGYEVT TAADGEEGLEAIGRDGDFDLVVSDVVMPTMDGPAMAREIRALRPSMPFLFMSGYAEEQLRREIDIPNMHFLAKPFSVQQI CEAVEQVLRAR >Mature_810_residues ASRGGDTAAGPSGLAPMRDWLLLGGAVSASAVVLWNASGQPLVAAGFVGGVAAIGAAIRLFLRPAQAESSPEFALPDWSV TNAAIEQSNDGIAITDRAGRLVCANALMSNWFGLSAVPPRLPLDREAVDALEAATRAAWRDGTATAEPLVSSNGTWRAEV RRAGRGEDFLIWRFMPVATQDLVAEIVGQIGGKLGRALAREGIQAAVVSPEGIVLSANPAFVQRATGNGSADVVGADFVS FLASDETERVYYAREGRKGASIRLVHLPVADPDGVANVDPARTTSLFLLIDEQGSVGEVRAGLPQIEALLARLPLGLAMT DRDGRFLFANAAFLRAAGHDDTIPPPYPSDLVIKEDKGALSDAVRRYAQGIPMAGDVAVRLRATPEEPVSLSLAGVRGLG EGAVLLSLKDSSEETRLKREIAQATKMQAVGQLAGGVAHDFNNVLTAIIGYCDLMLMRHTPGDSDYDDIQQVKANSNRAA SLTRQLLAFSRQQTLRPQVLQLPDVVAEVSALLKRLIGEKITLEVTHDRDLGFVRADPTQLEQVLLNLVVNARDAINDKL AAPGAKGSGVVKLMTRRVTAADVRSMKSEILPIGDYTALIVEDNGHGIKPGQIGKIFEPFFTTKEKGKGTGLGLSTVYGI VKQSGGFIFAESEVDRFTRFSIYLPVHVPDAAEIAHARRPAHEAKREWAGGGRVLLVEDEDTVRAVAERALTRQGYEVTT AADGEEGLEAIGRDGDFDLVVSDVVMPTMDGPAMAREIRALRPSMPFLFMSGYAEEQLRREIDIPNMHFLAKPFSVQQIC EAVEQVLRAR
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1790436, Length=253, Percent_Identity=31.6205533596838, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1788549, Length=265, Percent_Identity=29.4339622641509, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI87081816, Length=245, Percent_Identity=26.1224489795918, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1788713, Length=361, Percent_Identity=23.2686980609418, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI1790300, Length=266, Percent_Identity=29.6992481203008, Blast_Score=77, Evalue=6e-15, Organism=Escherichia coli, GI145693157, Length=389, Percent_Identity=24.6786632390745, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI48994928, Length=416, Percent_Identity=24.7596153846154, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI1790437, Length=115, Percent_Identity=35.6521739130435, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 86729; Mature: 86598
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASRGGDTAAGPSGLAPMRDWLLLGGAVSASAVVLWNASGQPLVAAGFVGGVAAIGAAIR CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHH LFLRPAQAESSPEFALPDWSVTNAAIEQSNDGIAITDRAGRLVCANALMSNWFGLSAVPP HHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCEEHHHHHHCCCCCCCCCC RLPLDREAVDALEAATRAAWRDGTATAEPLVSSNGTWRAEVRRAGRGEDFLIWRFMPVAT CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCHHHHHHCCCCCCEEEEEEECHHH QDLVAEIVGQIGGKLGRALAREGIQAAVVSPEGIVLSANPAFVQRATGNGSADVVGADFV HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCHHHEEECCCCCCCCCHHHHHH SFLASDETERVYYAREGRKGASIRLVHLPVADPDGVANVDPARTTSLFLLIDEQGSVGEV HHHHCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHH RAGLPQIEALLARLPLGLAMTDRDGRFLFANAAFLRAAGHDDTIPPPYPSDLVIKEDKGA HCCCHHHHHHHHHCCCCEEEECCCCCEEEECHHEEEECCCCCCCCCCCCCCEEEECCCCH LSDAVRRYAQGIPMAGDVAVRLRATPEEPVSLSLAGVRGLGEGAVLLSLKDSSEETRLKR HHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCEEEEEECCCCHHHHHHH EIAQATKMQAVGQLAGGVAHDFNNVLTAIIGYCDLMLMRHTPGDSDYDDIQQVKANSNRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHH ASLTRQLLAFSRQQTLRPQVLQLPDVVAEVSALLKRLIGEKITLEVTHDRDLGFVRADPT HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEECCHH QLEQVLLNLVVNARDAINDKLAAPGAKGSGVVKLMTRRVTAADVRSMKSEILPIGDYTAL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE IVEDNGHGIKPGQIGKIFEPFFTTKEKGKGTGLGLSTVYGIVKQSGGFIFAESEVDRFTR EEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCEEE FSIYLPVHVPDAAEIAHARRPAHEAKREWAGGGRVLLVEDEDTVRAVAERALTRQGYEVT EEEEEEEECCCHHHHHHHCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEEE TAADGEEGLEAIGRDGDFDLVVSDVVMPTMDGPAMAREIRALRPSMPFLFMSGYAEEQLR ECCCCHHHHHHHCCCCCCEEEEECHHHCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHH REIDIPNMHFLAKPFSVQQICEAVEQVLRAR HHCCCCCCEEEECCCCHHHHHHHHHHHHHCC >Mature Secondary Structure ASRGGDTAAGPSGLAPMRDWLLLGGAVSASAVVLWNASGQPLVAAGFVGGVAAIGAAIR CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHH LFLRPAQAESSPEFALPDWSVTNAAIEQSNDGIAITDRAGRLVCANALMSNWFGLSAVPP HHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCEEHHHHHHCCCCCCCCCC RLPLDREAVDALEAATRAAWRDGTATAEPLVSSNGTWRAEVRRAGRGEDFLIWRFMPVAT CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCHHHHHHCCCCCCEEEEEEECHHH QDLVAEIVGQIGGKLGRALAREGIQAAVVSPEGIVLSANPAFVQRATGNGSADVVGADFV HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCHHHEEECCCCCCCCCHHHHHH SFLASDETERVYYAREGRKGASIRLVHLPVADPDGVANVDPARTTSLFLLIDEQGSVGEV HHHHCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHH RAGLPQIEALLARLPLGLAMTDRDGRFLFANAAFLRAAGHDDTIPPPYPSDLVIKEDKGA HCCCHHHHHHHHHCCCCEEEECCCCCEEEECHHEEEECCCCCCCCCCCCCCEEEECCCCH LSDAVRRYAQGIPMAGDVAVRLRATPEEPVSLSLAGVRGLGEGAVLLSLKDSSEETRLKR HHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCEEEEEECCCCHHHHHHH EIAQATKMQAVGQLAGGVAHDFNNVLTAIIGYCDLMLMRHTPGDSDYDDIQQVKANSNRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHH ASLTRQLLAFSRQQTLRPQVLQLPDVVAEVSALLKRLIGEKITLEVTHDRDLGFVRADPT HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEECCHH QLEQVLLNLVVNARDAINDKLAAPGAKGSGVVKLMTRRVTAADVRSMKSEILPIGDYTAL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE IVEDNGHGIKPGQIGKIFEPFFTTKEKGKGTGLGLSTVYGIVKQSGGFIFAESEVDRFTR EEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCEEE FSIYLPVHVPDAAEIAHARRPAHEAKREWAGGGRVLLVEDEDTVRAVAERALTRQGYEVT EEEEEEEECCCHHHHHHHCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEEE TAADGEEGLEAIGRDGDFDLVVSDVVMPTMDGPAMAREIRALRPSMPFLFMSGYAEEQLR ECCCCHHHHHHHCCCCCCEEEEECHHHCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHH REIDIPNMHFLAKPFSVQQICEAVEQVLRAR HHCCCCCCEEEECCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA