| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is yagR [C]
Identifier: 87199368
GI number: 87199368
Start: 1389958
End: 1392267
Strand: Direct
Name: yagR [C]
Synonym: Saro_1347
Alternate gene names: 87199368
Gene position: 1389958-1392267 (Clockwise)
Preceding gene: 87199367
Following gene: 87199372
Centisome position: 39.03
GC content: 67.27
Gene sequence:
>2310_bases GTGAGCGGAGCCCTTTCCATCCACGGCGCGACGCTCAGCCGCCGGGCCTTTGTCGGTGCCGGGGGCGCGTTGGTCGTCGC GCTCGGCCTGCCGGCCAGCGGCGCCCGCGCGGCAAGCGGATCGAGCGACCCGGCAATCCCCGCCAACTGGATCGAGATCA ACGCCGACAACACCGTGCTGATCCGCACTGGCAAGTGCGACTTCGGCCAGAGCAGCATCTACACCGCTTATCGCCAGATC GTGGCCGAAGAACTGTCGATGCCGATCGCGGCGATGACCACGGTCGTTTCCGGCGATACCGACCGCACGCCCGACGGCGG CGGCACATTCTGGCTGCTCGGATACTCGCAGAACCTGCGCAAGGTCGCCGCGTTCATGCGCGAGGCCGCGCTGGAGCTGG CCGCGAAGAAGCTCGGTGTCGGACGGGACAAGCTTTCGGTCGCCGATGGCCGCATTTCGGGTGACGGCAAGTCCGTGACC TATGGCGAGCTGGTGCGCGGGCAGTCGCTTACGCTGACGATCCCGGTCGAGGGCGACCTTACCAGCCCGATGGGCCTCAC GGTGAAGGGCGAGCCGCCGATGAAGCCGGTGGCCGATTACACCATCGTCGGCAAGCCGGTGCCGAACCCGATGACGGGTC CCAAGATCTCCGGCGAGGCGGTATGGGTGGGTGACGTCAAGCTGCCCGGCATGCTCCACGCGCGTGTGATCCATCCCGAG ACGCTGGGGTCGACGCTGGATAAGCCCGGCACGCTCGATACTGCGCAGTTCCCGGGCGCGCGCCTGGTGCGGATCGGCAA TCTCCTGGCGGTCGTCTCGCCCGAAGAGTGGGAGGCCGTTCAGGCCGCGCAGGCGGTTGCCGCAGACACGACGTGGACCG CGTGGAAGGGCCTGCCCGGCCATGATGGCTTGCGCGACCACATGCGCGACAAGGCCGACTGGAAGAGCTTCCCGGTGCGC GACGGCGCCGCCAACAAGGGCGATCCGGCCGCCGTTACCGGAGCCAGGGTGCACCAAGCCGCGTACTTCCTGCCCTATCA CAAGCACGCGCCGATCAGCCCGATGGTCACGCTGGCAGACTACCGTCCCGACGGTTCGGTTACCCTGCACACGCTTTCGC AGAACCCGCAGCACCTGCGACGGATGATCGCTAAGATGCTGGGCACGGGGCAGGACAAGGTCGTGGTGCGGACCTATCCA GGATCCGGCCATTATGGCCGTTCGAATGGCGGCAGTGCGGGCAGCGAGGACGAGGCGGTGCTGCTTTCGCGCGAACTGGG GCGGCCCGTGCGCGTGCAGTGGATGCGCCACGACGACATGCAGTGGTCGACGCAGTCGTCCGCCGGTCTTTCCGACATTC GCATCGCGCTCGGCGCGGATGGACGGATCGAGGGCTATTCCGCCGAACACCGTGTGCCTCCGATGCAGGACGATCGCCTG ATCGGCGCGCTGCTGGCGGGGTTGCCGGTCCTTGAAGCGCCTTCGGCCGAAACGCGCGACGGTTTCCAGAACGGCGTGAC CGATGTCCAGGACACATGGGTCTACGGCAAGGTCGGCGCCGTGCGCGAGAAGGGGCTCGGCACCTGGCAGGTCGGCCAGC GGGAATCTCCGATTGCGGTGGGCCTGCGCGACCATTCGATGCGCACGCCGATCCAGTTCCAGCAGAACTTCCCGCGCGAG CTGGCGATCAGCGAGGCGGCGATGCTTGCGGGGAAGGATCCGCTGCAGTTCCGGCTCGACCATGTCACCGATCCGCGCTT CACCGCCATTCTCGAGCGGCTGCGCAAGGAGTCCGGTTGGCAGGCGCGACCGTCTCCAGCCCCGGGCGCGAAGGCATCGG GCAAGGGTGCGGTCAAAGGGCAGGGCGTATCGATCATGCTGCGCGACAATGGCTACTGGGCCTGTGCCGCCCACGTATCC GTCACGCCAGACAGCGGCGAGGTGAAGGTCGAGCGGATGACGATGGTTGCCGACGTCGGCATCGTCATCAACCCGCTGCA ACTGCGCCGCCAGATCCAGGCCGGTTGCCTGATGGGCGTGAGCCAGGCCCTGCACGAGGAAGTCGCGTTCGACGAAGGTG CGATCACTTCCGCCGATTGGTCTGGCTATCCCATCCTGACCATGGCCGAGATGCCGGAGCTGCGGATCTTCTTCGAGACA AACCCTGCCGTCGGCAACTATGGCCAGGGTTCGGAAAGCGCCAATGCGCTGGCGGCGCCTGCCATCGCGGCGGCTGTGAT GGACGCCACCGGAAAGCCGGTACGCCGACTGCCCCTGCGGCCAGACTACGTGAAGGTGGCGCTCTCCTGA
Upstream 100 bases:
>100_bases CTTCCGGCCCTTCGCCCCACCTGTGCCGCTGCGGCAGCTACGCCGCGATCCTGGAAGGCGCCCATCGCGCCGCGCGGCTC ATGGCCGAAGGAGGTGCGAA
Downstream 100 bases:
>100_bases CGGAGCGCCGAAGCGGCGGGGATCAGCCCGCCGCTTCGAGCGCCTCGCCGGCTTCCAGCCACAGCATTTCGGCCTCTTCC AACTCCTTCGCCAGCTTGCC
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: ALDH [H]
Number of amino acids: Translated: 769; Mature: 768
Protein sequence:
>769_residues MSGALSIHGATLSRRAFVGAGGALVVALGLPASGARAASGSSDPAIPANWIEINADNTVLIRTGKCDFGQSSIYTAYRQI VAEELSMPIAAMTTVVSGDTDRTPDGGGTFWLLGYSQNLRKVAAFMREAALELAAKKLGVGRDKLSVADGRISGDGKSVT YGELVRGQSLTLTIPVEGDLTSPMGLTVKGEPPMKPVADYTIVGKPVPNPMTGPKISGEAVWVGDVKLPGMLHARVIHPE TLGSTLDKPGTLDTAQFPGARLVRIGNLLAVVSPEEWEAVQAAQAVAADTTWTAWKGLPGHDGLRDHMRDKADWKSFPVR DGAANKGDPAAVTGARVHQAAYFLPYHKHAPISPMVTLADYRPDGSVTLHTLSQNPQHLRRMIAKMLGTGQDKVVVRTYP GSGHYGRSNGGSAGSEDEAVLLSRELGRPVRVQWMRHDDMQWSTQSSAGLSDIRIALGADGRIEGYSAEHRVPPMQDDRL IGALLAGLPVLEAPSAETRDGFQNGVTDVQDTWVYGKVGAVREKGLGTWQVGQRESPIAVGLRDHSMRTPIQFQQNFPRE LAISEAAMLAGKDPLQFRLDHVTDPRFTAILERLRKESGWQARPSPAPGAKASGKGAVKGQGVSIMLRDNGYWACAAHVS VTPDSGEVKVERMTMVADVGIVINPLQLRRQIQAGCLMGVSQALHEEVAFDEGAITSADWSGYPILTMAEMPELRIFFET NPAVGNYGQGSESANALAAPAIAAAVMDATGKPVRRLPLRPDYVKVALS
Sequences:
>Translated_769_residues MSGALSIHGATLSRRAFVGAGGALVVALGLPASGARAASGSSDPAIPANWIEINADNTVLIRTGKCDFGQSSIYTAYRQI VAEELSMPIAAMTTVVSGDTDRTPDGGGTFWLLGYSQNLRKVAAFMREAALELAAKKLGVGRDKLSVADGRISGDGKSVT YGELVRGQSLTLTIPVEGDLTSPMGLTVKGEPPMKPVADYTIVGKPVPNPMTGPKISGEAVWVGDVKLPGMLHARVIHPE TLGSTLDKPGTLDTAQFPGARLVRIGNLLAVVSPEEWEAVQAAQAVAADTTWTAWKGLPGHDGLRDHMRDKADWKSFPVR DGAANKGDPAAVTGARVHQAAYFLPYHKHAPISPMVTLADYRPDGSVTLHTLSQNPQHLRRMIAKMLGTGQDKVVVRTYP GSGHYGRSNGGSAGSEDEAVLLSRELGRPVRVQWMRHDDMQWSTQSSAGLSDIRIALGADGRIEGYSAEHRVPPMQDDRL IGALLAGLPVLEAPSAETRDGFQNGVTDVQDTWVYGKVGAVREKGLGTWQVGQRESPIAVGLRDHSMRTPIQFQQNFPRE LAISEAAMLAGKDPLQFRLDHVTDPRFTAILERLRKESGWQARPSPAPGAKASGKGAVKGQGVSIMLRDNGYWACAAHVS VTPDSGEVKVERMTMVADVGIVINPLQLRRQIQAGCLMGVSQALHEEVAFDEGAITSADWSGYPILTMAEMPELRIFFET NPAVGNYGQGSESANALAAPAIAAAVMDATGKPVRRLPLRPDYVKVALS >Mature_768_residues SGALSIHGATLSRRAFVGAGGALVVALGLPASGARAASGSSDPAIPANWIEINADNTVLIRTGKCDFGQSSIYTAYRQIV AEELSMPIAAMTTVVSGDTDRTPDGGGTFWLLGYSQNLRKVAAFMREAALELAAKKLGVGRDKLSVADGRISGDGKSVTY GELVRGQSLTLTIPVEGDLTSPMGLTVKGEPPMKPVADYTIVGKPVPNPMTGPKISGEAVWVGDVKLPGMLHARVIHPET LGSTLDKPGTLDTAQFPGARLVRIGNLLAVVSPEEWEAVQAAQAVAADTTWTAWKGLPGHDGLRDHMRDKADWKSFPVRD GAANKGDPAAVTGARVHQAAYFLPYHKHAPISPMVTLADYRPDGSVTLHTLSQNPQHLRRMIAKMLGTGQDKVVVRTYPG SGHYGRSNGGSAGSEDEAVLLSRELGRPVRVQWMRHDDMQWSTQSSAGLSDIRIALGADGRIEGYSAEHRVPPMQDDRLI GALLAGLPVLEAPSAETRDGFQNGVTDVQDTWVYGKVGAVREKGLGTWQVGQRESPIAVGLRDHSMRTPIQFQQNFPREL AISEAAMLAGKDPLQFRLDHVTDPRFTAILERLRKESGWQARPSPAPGAKASGKGAVKGQGVSIMLRDNGYWACAAHVSV TPDSGEVKVERMTMVADVGIVINPLQLRRQIQAGCLMGVSQALHEEVAFDEGAITSADWSGYPILTMAEMPELRIFFETN PAVGNYGQGSESANALAAPAIAAAVMDATGKPVRRLPLRPDYVKVALS
Specific function: Unknown
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786478, Length=136, Percent_Identity=35.2941176470588, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012368 - InterPro: IPR006311 [H]
Pfam domain/function: PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.2.99.3 [H]
Molecular weight: Translated: 81940; Mature: 81809
Theoretical pI: Translated: 7.54; Mature: 7.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGALSIHGATLSRRAFVGAGGALVVALGLPASGARAASGSSDPAIPANWIEINADNTVL CCCCEEEECCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEE IRTGKCDFGQSSIYTAYRQIVAEELSMPIAAMTTVVSGDTDRTPDGGGTFWLLGYSQNLR EEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHEEECCCCCCCCCCCCEEEEEECCCCHH KVAAFMREAALELAAKKLGVGRDKLSVADGRISGDGKSVTYGELVRGQSLTLTIPVEGDL HHHHHHHHHHHHHHHHHHCCCCCCEEEECCEECCCCCEEEHHHHHCCCEEEEEEEECCCC TSPMGLTVKGEPPMKPVADYTIVGKPVPNPMTGPKISGEAVWVGDVKLPGMLHARVIHPE CCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECHH TLGSTLDKPGTLDTAQFPGARLVRIGNLLAVVSPEEWEAVQAAQAVAADTTWTAWKGLPG HHHHHCCCCCCCCCCCCCCCEEEEECCEEEEECCCHHHHHHHHHHHHCCCCCHHCCCCCC HDGLRDHMRDKADWKSFPVRDGAANKGDPAAVTGARVHQAAYFLPYHKHAPISPMVTLAD CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHEEEECCCCCCCCCCCEEEEEE YRPDGSVTLHTLSQNPQHLRRMIAKMLGTGQDKVVVRTYPGSGHYGRSNGGSAGSEDEAV ECCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEE LLSRELGRPVRVQWMRHDDMQWSTQSSAGLSDIRIALGADGRIEGYSAEHRVPPMQDDRL EEEHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHH IGALLAGLPVLEAPSAETRDGFQNGVTDVQDTWVYGKVGAVREKGLGTWQVGQRESPIAV HHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHCEEEECCCCHHHCCCCEEECCCCCCCEEE GLRDHSMRTPIQFQQNFPRELAISEAAMLAGKDPLQFRLDHVTDPRFTAILERLRKESGW EECCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCC QARPSPAPGAKASGKGAVKGQGVSIMLRDNGYWACAAHVSVTPDSGEVKVERMTMVADVG CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCCCEEEEEEEEEEECC IVINPLQLRRQIQAGCLMGVSQALHEEVAFDEGAITSADWSGYPILTMAEMPELRIFFET EEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEEEECCCCEEEEEEC NPAVGNYGQGSESANALAAPAIAAAVMDATGKPVRRLPLRPDYVKVALS CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEEEC >Mature Secondary Structure SGALSIHGATLSRRAFVGAGGALVVALGLPASGARAASGSSDPAIPANWIEINADNTVL CCCEEEECCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEE IRTGKCDFGQSSIYTAYRQIVAEELSMPIAAMTTVVSGDTDRTPDGGGTFWLLGYSQNLR EEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHEEECCCCCCCCCCCCEEEEEECCCCHH KVAAFMREAALELAAKKLGVGRDKLSVADGRISGDGKSVTYGELVRGQSLTLTIPVEGDL HHHHHHHHHHHHHHHHHHCCCCCCEEEECCEECCCCCEEEHHHHHCCCEEEEEEEECCCC TSPMGLTVKGEPPMKPVADYTIVGKPVPNPMTGPKISGEAVWVGDVKLPGMLHARVIHPE CCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECHH TLGSTLDKPGTLDTAQFPGARLVRIGNLLAVVSPEEWEAVQAAQAVAADTTWTAWKGLPG HHHHHCCCCCCCCCCCCCCCEEEEECCEEEEECCCHHHHHHHHHHHHCCCCCHHCCCCCC HDGLRDHMRDKADWKSFPVRDGAANKGDPAAVTGARVHQAAYFLPYHKHAPISPMVTLAD CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHEEEECCCCCCCCCCCEEEEEE YRPDGSVTLHTLSQNPQHLRRMIAKMLGTGQDKVVVRTYPGSGHYGRSNGGSAGSEDEAV ECCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEE LLSRELGRPVRVQWMRHDDMQWSTQSSAGLSDIRIALGADGRIEGYSAEHRVPPMQDDRL EEEHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHH IGALLAGLPVLEAPSAETRDGFQNGVTDVQDTWVYGKVGAVREKGLGTWQVGQRESPIAV HHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHCEEEECCCCHHHCCCCEEECCCCCCCEEE GLRDHSMRTPIQFQQNFPRELAISEAAMLAGKDPLQFRLDHVTDPRFTAILERLRKESGW EECCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCC QARPSPAPGAKASGKGAVKGQGVSIMLRDNGYWACAAHVSVTPDSGEVKVERMTMVADVG CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCCCEEEEEEEEEEECC IVINPLQLRRQIQAGCLMGVSQALHEEVAFDEGAITSADWSGYPILTMAEMPELRIFFET EEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEEEECCCCEEEEEEC NPAVGNYGQGSESANALAAPAIAAAVMDATGKPVRRLPLRPDYVKVALS CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2606906 [H]