Click here to switch to the map view.

The map label for this gene is yciL [C]

Identifier: 87199318

GI number: 87199318

Start: 1341718

End: 1342530

Strand: Reverse

Name: yciL [C]

Synonym: Saro_1297

Alternate gene names: 87199318

Gene position: 1342530-1341718 (Counterclockwise)

Preceding gene: 87199320

Following gene: 87199317

Centisome position: 37.69

GC content: 69.5

Gene sequence:

>813_bases
ATGCGCAGCGGCGCGCCCCGCACCTCGCAGCCCGTCGTTGCCGCCAAGCGCGCGCCTGCCGCCGATGGCTCCGAGCGTGA
GGGCGATCGCATCGCCAAGCTGCTCGCCCGCGCCGGGATCGCCAGCCGCCGCGAGGTCGAGCGGATGATCGAGGAAGGGC
GCGTGAAGATCGGCGACGAAGTCGTGACCACGCCCGCCACGCTGCTCACCAGCCTCAAGGGCGTGAGCGTCGACGGCAAG
CCGGTCGCGCCGATGGCCCCGCCGCGCCTGTTCCGCTTCCACAAGCCCTCGGGCCTCATCACGGCCGAGCGCGATCCCAC
CGGGCGGCCGACGATCTACACGGCCCTGCGCAACGCGCTGCCGCAAGGCACTCCGCGCGTCATGCCGGTCGGCCGCCTCG
ACGTGAACACCGAAGGCCTGCTGCTGATGACCAACGACGGCGAGCTGAAGCGCGCGCTCGAGTTGCCGTCGACCGGCATT
CCGCGCACCTACCGCGCCCGCACATTCGGCGACATCTCGCAGGCCCGGCTCGAGGAACTGATGGAAGGCATCGAGATCGA
CGGCGTGCGCTATGGCTCGATCAACGCGAACCTCGAACGCAGTGCGGGTCGCAACAAGTGGATCGAGCTGACCCTGACCG
AAGGCAAGAACCGCGAAGTGCGCCGCGTGCTGGAGCATCTCGGCCTCCAGGTCTCGCGCCTGCTGCGCACCAAGTACGGC
CCGTTCGAACTGGCCGACCTGCCGCGCGGCGCCGCCGAGGAAATCCCGCAGGTCATGGTCGAACGCTTTCGGAAGACGCT
GAAGACAGCATGA

Upstream 100 bases:

>100_bases
TTGCGCGATCTCGCGTAAGGGGCGGGCCATGACTTTTCCCCCGAAGAACAGGACCGGCCGATCGGGACGACCCGCCGCTC
CTGCCAAGAAGCCCTTTTCC

Downstream 100 bases:

>100_bases
GAATCATTGCCGGAGAATGGCGCGGCCGTCCGCTGCGTGCGCCCGAGGGCGATACCACCCGCCCCACCGCCGACCGCACC
CGCGAAACCCTGTTCTCGAT

Product: pseudouridine synthase Rsu

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MRSGAPRTSQPVVAAKRAPAADGSEREGDRIAKLLARAGIASRREVERMIEEGRVKIGDEVVTTPATLLTSLKGVSVDGK
PVAPMAPPRLFRFHKPSGLITAERDPTGRPTIYTALRNALPQGTPRVMPVGRLDVNTEGLLLMTNDGELKRALELPSTGI
PRTYRARTFGDISQARLEELMEGIEIDGVRYGSINANLERSAGRNKWIELTLTEGKNREVRRVLEHLGLQVSRLLRTKYG
PFELADLPRGAAEEIPQVMVERFRKTLKTA

Sequences:

>Translated_270_residues
MRSGAPRTSQPVVAAKRAPAADGSEREGDRIAKLLARAGIASRREVERMIEEGRVKIGDEVVTTPATLLTSLKGVSVDGK
PVAPMAPPRLFRFHKPSGLITAERDPTGRPTIYTALRNALPQGTPRVMPVGRLDVNTEGLLLMTNDGELKRALELPSTGI
PRTYRARTFGDISQARLEELMEGIEIDGVRYGSINANLERSAGRNKWIELTLTEGKNREVRRVLEHLGLQVSRLLRTKYG
PFELADLPRGAAEEIPQVMVERFRKTLKTA
>Mature_270_residues
MRSGAPRTSQPVVAAKRAPAADGSEREGDRIAKLLARAGIASRREVERMIEEGRVKIGDEVVTTPATLLTSLKGVSVDGK
PVAPMAPPRLFRFHKPSGLITAERDPTGRPTIYTALRNALPQGTPRVMPVGRLDVNTEGLLLMTNDGELKRALELPSTGI
PRTYRARTFGDISQARLEELMEGIEIDGVRYGSINANLERSAGRNKWIELTLTEGKNREVRRVLEHLGLQVSRLLRTKYG
PFELADLPRGAAEEIPQVMVERFRKTLKTA

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787524, Length=255, Percent_Identity=39.2156862745098, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1788510, Length=236, Percent_Identity=29.2372881355932, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1790453, Length=230, Percent_Identity=28.2608695652174, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87081838, Length=185, Percent_Identity=31.8918918918919, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29763; Mature: 29763

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSGAPRTSQPVVAAKRAPAADGSEREGDRIAKLLARAGIASRREVERMIEEGRVKIGDE
CCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEECCC
VVTTPATLLTSLKGVSVDGKPVAPMAPPRLFRFHKPSGLITAERDPTGRPTIYTALRNAL
HHCCHHHHHHHHCCCCCCCCCCCCCCCHHHEEEECCCCCEEECCCCCCCCHHHHHHHHHC
PQGTPRVMPVGRLDVNTEGLLLMTNDGELKRALELPSTGIPRTYRARTFGDISQARLEEL
CCCCCCEEECCEEECCCCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHH
MEGIEIDGVRYGSINANLERSAGRNKWIELTLTEGKNREVRRVLEHLGLQVSRLLRTKYG
HHCCCCCCEEECCCCCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHCCC
PFELADLPRGAAEEIPQVMVERFRKTLKTA
CEEHHHCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRSGAPRTSQPVVAAKRAPAADGSEREGDRIAKLLARAGIASRREVERMIEEGRVKIGDE
CCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEECCC
VVTTPATLLTSLKGVSVDGKPVAPMAPPRLFRFHKPSGLITAERDPTGRPTIYTALRNAL
HHCCHHHHHHHHCCCCCCCCCCCCCCCHHHEEEECCCCCEEECCCCCCCCHHHHHHHHHC
PQGTPRVMPVGRLDVNTEGLLLMTNDGELKRALELPSTGIPRTYRARTFGDISQARLEEL
CCCCCCEEECCEEECCCCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHH
MEGIEIDGVRYGSINANLERSAGRNKWIELTLTEGKNREVRRVLEHLGLQVSRLLRTKYG
HHCCCCCCEEECCCCCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHCCC
PFELADLPRGAAEEIPQVMVERFRKTLKTA
CEEHHHCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA