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The map label for this gene is fdx [C]

Identifier: 87199137

GI number: 87199137

Start: 1162325

End: 1162642

Strand: Reverse

Name: fdx [C]

Synonym: Saro_1115

Alternate gene names: 87199137

Gene position: 1162642-1162325 (Counterclockwise)

Preceding gene: 87199140

Following gene: 87199133

Centisome position: 32.64

GC content: 61.95

Gene sequence:

>318_bases
ATGCCCAAGATTGTCGTTGTCAATCGTGCTGGTGAAGAAAAGACCGTCGACGCCGATGCCGGCCTGTCGGTGATGGAAGC
AATCCGTGACAACGGCTTCGACGAGCTGCTGGCCCTGTGCGGCGGCTGCTGCTCGTGCGCGACCTGCCATGTCTATGTCG
ATCCCGCCTTTGCCGACAAGATCCCGGCGATGAGCGAAGACGAGAACGACCTGCTCGACAGCTCGGACCACCGCAACGAA
TCCTCGCGCCTTTCGTGCCAGGTGCAGATCACCGGCGATCTCGACGGCCTGCGCGTGACGATCGCTCCGGAAGACTGA

Upstream 100 bases:

>100_bases
CGGATCGGCAGTTGCCAAAGCCGGAACCACGCGATAGCAGCCCCTTCCAAAGGCGAACAGGGGGCGGGATTTTCCCTGCG
CCGCGTTTGGAGAATGGACG

Downstream 100 bases:

>100_bases
TCTTCCGGCAGCAGCGGAATACCAAAAAAGGCCCGCCTCCAACCGGAGCGCGGGCCTTTTTTTGCAGCCAGCGTTTGCCG
GAACTAGAGCCGCAGGCCCG

Product: ferredoxin

Products: NA

Alternate protein names: Ferredoxin VI; FdVI [H]

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MPKIVVVNRAGEEKTVDADAGLSVMEAIRDNGFDELLALCGGCCSCATCHVYVDPAFADKIPAMSEDENDLLDSSDHRNE
SSRLSCQVQITGDLDGLRVTIAPED

Sequences:

>Translated_105_residues
MPKIVVVNRAGEEKTVDADAGLSVMEAIRDNGFDELLALCGGCCSCATCHVYVDPAFADKIPAMSEDENDLLDSSDHRNE
SSRLSCQVQITGDLDGLRVTIAPED
>Mature_104_residues
PKIVVVNRAGEEKTVDADAGLSVMEAIRDNGFDELLALCGGCCSCATCHVYVDPAFADKIPAMSEDENDLLDSSDHRNES
SRLSCQVQITGDLDGLRVTIAPED

Specific function: Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions [H]

COG id: COG0633

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Homo sapiens, GI72534754, Length=98, Percent_Identity=35.7142857142857, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17544202, Length=99, Percent_Identity=40.4040404040404, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6325004, Length=99, Percent_Identity=38.3838383838384, Blast_Score=84, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001055
- InterPro:   IPR018298
- InterPro:   IPR012675
- InterPro:   IPR001041 [H]

Pfam domain/function: PF00111 Fer2 [H]

EC number: NA

Molecular weight: Translated: 11246; Mature: 11114

Theoretical pI: Translated: 3.96; Mature: 3.96

Prosite motif: PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
5.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKIVVVNRAGEEKTVDADAGLSVMEAIRDNGFDELLALCGGCCSCATCHVYVDPAFADK
CCCEEEEECCCCCCEECCCCCHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEEECCHHHCC
IPAMSEDENDLLDSSDHRNESSRLSCQVQITGDLDGLRVTIAPED
CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCC
>Mature Secondary Structure 
PKIVVVNRAGEEKTVDADAGLSVMEAIRDNGFDELLALCGGCCSCATCHVYVDPAFADK
CCEEEEECCCCCCEECCCCCHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEEECCHHHCC
IPAMSEDENDLLDSSDHRNESSRLSCQVQITGDLDGLRVTIAPED
CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 2Fe-2S Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8026503; 11173487 [H]