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The map label for this gene is ybeY [C]

Identifier: 87199002

GI number: 87199002

Start: 1023914

End: 1024417

Strand: Reverse

Name: ybeY [C]

Synonym: Saro_0980

Alternate gene names: 87199002

Gene position: 1024417-1023914 (Counterclockwise)

Preceding gene: 87199003

Following gene: 87199001

Centisome position: 28.76

GC content: 66.27

Gene sequence:

>504_bases
GTGAGTGCGCCCATCCTCGAAATGGACATCGACCCCGTCTGGGGCGACGCGATCGACTGGGAGGACATTGCCAGCCGCGC
CGCGGAAGCCGCCGCCAAGGTCGCGCCCGAACTCGCCCACGAGAACCTGCTGGTCAGTGTCGTCCTGGCCGACGACGACG
AGGTCCACGCCCTCAACAAGCAATGGCGGGCCAAGGACAAGCCGACCAACGTCCTGTCCTTCCCCATGCTCAGCCGCGAG
GAAGTGCTCCACGCCGCGGCCGACGAAGGCGCGCCCGGCATGCTTGGCGACATGATCCTCGCCCACGGCGTCTGCACGCG
CGAAGCGGCGGAAAAGGGGGTGTCCGTCGAAACCCACGCCACCCACCTCGTCGTGCATGGATTGCTCCACCTTGCCGGAT
ACGACCACGAGCTTGGCGAGGCCGAAGCCGAGGAAATGGAGAATCTGGAGCGGAAGGCGCTTGCGCTCATGGGCATCGCC
GACCCATATGCGGTCGAAGACTGA

Upstream 100 bases:

>100_bases
GGATCGCAACGGTACGCTTCAGCACGGCAGACGTCGTGCGCCACCCCATCGTCGGCCGGATCGTCGAGGCATACGAAGGC
AAGAACGAAGGCCGCGACGC

Downstream 100 bases:

>100_bases
CCACTTAGGGGGAATTCGAAGTGCCCGAGGGCAACGGCTCTGCCGGCGAAAGCCGGTCGAGTGACGGAGACAGTAGCAGT
CGCGCGTTGTGGCGCGCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MSAPILEMDIDPVWGDAIDWEDIASRAAEAAAKVAPELAHENLLVSVVLADDDEVHALNKQWRAKDKPTNVLSFPMLSRE
EVLHAAADEGAPGMLGDMILAHGVCTREAAEKGVSVETHATHLVVHGLLHLAGYDHELGEAEAEEMENLERKALALMGIA
DPYAVED

Sequences:

>Translated_167_residues
MSAPILEMDIDPVWGDAIDWEDIASRAAEAAAKVAPELAHENLLVSVVLADDDEVHALNKQWRAKDKPTNVLSFPMLSRE
EVLHAAADEGAPGMLGDMILAHGVCTREAAEKGVSVETHATHLVVHGLLHLAGYDHELGEAEAEEMENLERKALALMGIA
DPYAVED
>Mature_166_residues
SAPILEMDIDPVWGDAIDWEDIASRAAEAAAKVAPELAHENLLVSVVLADDDEVHALNKQWRAKDKPTNVLSFPMLSREE
VLHAAADEGAPGMLGDMILAHGVCTREAAEKGVSVETHATHLVVHGLLHLAGYDHELGEAEAEEMENLERKALALMGIAD
PYAVED

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=137, Percent_Identity=43.7956204379562, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_NOVAD (Q2G9P8)

Other databases:

- EMBL:   CP000248
- RefSeq:   YP_496259.1
- ProteinModelPortal:   Q2G9P8
- SMR:   Q2G9P8
- STRING:   Q2G9P8
- GeneID:   3915762
- GenomeReviews:   CP000248_GR
- KEGG:   nar:Saro_0980
- NMPDR:   fig|48935.1.peg.3086
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   HGILHIT
- PhylomeDB:   Q2G9P8
- ProtClustDB:   CLSK844004
- BioCyc:   NARO279238:SARO_0980-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18018; Mature: 17887

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPILEMDIDPVWGDAIDWEDIASRAAEAAAKVAPELAHENLLVSVVLADDDEVHALNK
CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHH
QWRAKDKPTNVLSFPMLSREEVLHAAADEGAPGMLGDMILAHGVCTREAAEKGVSVETHA
HHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCHHHH
THLVVHGLLHLAGYDHELGEAEAEEMENLERKALALMGIADPYAVED
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SAPILEMDIDPVWGDAIDWEDIASRAAEAAAKVAPELAHENLLVSVVLADDDEVHALNK
CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHH
QWRAKDKPTNVLSFPMLSREEVLHAAADEGAPGMLGDMILAHGVCTREAAEKGVSVETHA
HHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCHHHH
THLVVHGLLHLAGYDHELGEAEAEEMENLERKALALMGIADPYAVED
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA