Click here to switch to the map view.

The map label for this gene is tlyC [H]

Identifier: 87199001

GI number: 87199001

Start: 1022952

End: 1023893

Strand: Reverse

Name: tlyC [H]

Synonym: Saro_0979

Alternate gene names: 87199001

Gene position: 1023893-1022952 (Counterclockwise)

Preceding gene: 87199002

Following gene: 87199000

Centisome position: 28.75

GC content: 66.24

Gene sequence:

>942_bases
GTGCCCGAGGGCAACGGCTCTGCCGGCGAAAGCCGGTCGAGTGACGGAGACAGTAGCAGTCGCGCGTTGTGGCGCGCGAT
CCGGGCCTTCTTTCGCGGGCCTGACCATGACCAGTCGCTGCGCGCGCAGATCGAGGAAGCGATCGACGAGCACGAAGGGG
AACCTCATCACGAAGGCGCCAGCAAGGGCGACCTCGTCCCGCTCGAGCGCCAGATGCTGCGCAACCTGCTCCACTTCAGC
GAGCACGACGCGGACGACGTGGCGATCCCGCGCGGCGAGATCACGGCAGTCCCTGCATCCGCGACATTCGAGGAGCTGAT
TTCCGCCTTTGCCGAGCATGGCCACAGCCGCCTGCCGGTATATGGCGAATCGCTCGACGAGATCGTGGGCATGATCCACG
TGAAGGACGTGTTCGGCATCGTCGCCGGCATGGCCCTGTCCGGCAAGGCTCCGCCAAAGGATTGGACGAGCCTCATGCGC
CAGCCGCTGTTCGTGCCCCAGGCGCGCGGTGCGCTCGACGTGCTGGCCGACATGCGCGCCAGCCGCACGCACCTGGCGGT
CGTCATCGACGAGTATTCCGGCACCGATGGCATCATCACCATCGAAGACCTGGTCGAGGAGATCATCGGCGAGATCGAGG
ACGAACACGACGATGCGCCTGAGGAACTGATCCGCCGAATCGATCCCGACACCTGGGACGCGGACGCCCGCGCCGAACTC
GACGACGTAGCCGAAACGGTTGACCGGAGGCTTGCGGAAGTCGAGGAAGACGTGGATACGCTGGGTGGTCTGGCCGTGGT
ACTCGCGGGCGAGGTCCCCCCTGTCGGACGCGTGCTCGAACATGCCAGCGGTTGGCGCATCGAGGTCACGGGTGGCGACG
AACGTCGCCTCACGCGCCTCAGGCTCCATGCGCCGCAGGCCGAACCGGTTGACGAGGAATAA

Upstream 100 bases:

>100_bases
AAGCCGAGGAAATGGAGAATCTGGAGCGGAAGGCGCTTGCGCTCATGGGCATCGCCGACCCATATGCGGTCGAAGACTGA
CCACTTAGGGGGAATTCGAA

Downstream 100 bases:

>100_bases
CGATGATCCGCCGCTTGCCCCCGCTGCGCTCGCTCGAGGCGTTCATTCGCGTCGTGCGCGCGGGTTCGGCCAAGACCGCG
GCGGCGGAACTCGCGCTCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MPEGNGSAGESRSSDGDSSSRALWRAIRAFFRGPDHDQSLRAQIEEAIDEHEGEPHHEGASKGDLVPLERQMLRNLLHFS
EHDADDVAIPRGEITAVPASATFEELISAFAEHGHSRLPVYGESLDEIVGMIHVKDVFGIVAGMALSGKAPPKDWTSLMR
QPLFVPQARGALDVLADMRASRTHLAVVIDEYSGTDGIITIEDLVEEIIGEIEDEHDDAPEELIRRIDPDTWDADARAEL
DDVAETVDRRLAEVEEDVDTLGGLAVVLAGEVPPVGRVLEHASGWRIEVTGGDERRLTRLRLHAPQAEPVDEE

Sequences:

>Translated_313_residues
MPEGNGSAGESRSSDGDSSSRALWRAIRAFFRGPDHDQSLRAQIEEAIDEHEGEPHHEGASKGDLVPLERQMLRNLLHFS
EHDADDVAIPRGEITAVPASATFEELISAFAEHGHSRLPVYGESLDEIVGMIHVKDVFGIVAGMALSGKAPPKDWTSLMR
QPLFVPQARGALDVLADMRASRTHLAVVIDEYSGTDGIITIEDLVEEIIGEIEDEHDDAPEELIRRIDPDTWDADARAEL
DDVAETVDRRLAEVEEDVDTLGGLAVVLAGEVPPVGRVLEHASGWRIEVTGGDERRLTRLRLHAPQAEPVDEE
>Mature_312_residues
PEGNGSAGESRSSDGDSSSRALWRAIRAFFRGPDHDQSLRAQIEEAIDEHEGEPHHEGASKGDLVPLERQMLRNLLHFSE
HDADDVAIPRGEITAVPASATFEELISAFAEHGHSRLPVYGESLDEIVGMIHVKDVFGIVAGMALSGKAPPKDWTSLMRQ
PLFVPQARGALDVLADMRASRTHLAVVIDEYSGTDGIITIEDLVEEIIGEIEDEHDDAPEELIRRIDPDTWDADARAELD
DVAETVDRRLAEVEEDVDTLGGLAVVLAGEVPPVGRVLEHASGWRIEVTGGDERRLTRLRLHAPQAEPVDEE

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=202, Percent_Identity=33.6633663366337, Blast_Score=107, Evalue=1e-23,
Organism=Escherichia coli, GI1786879, Length=240, Percent_Identity=30.8333333333333, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI87082033, Length=261, Percent_Identity=26.8199233716475, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790664, Length=243, Percent_Identity=23.8683127572016, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788119, Length=266, Percent_Identity=24.812030075188, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI145693175, Length=210, Percent_Identity=21.9047619047619, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC [H]

EC number: NA

Molecular weight: Translated: 34280; Mature: 34149

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEGNGSAGESRSSDGDSSSRALWRAIRAFFRGPDHDQSLRAQIEEAIDEHEGEPHHEGA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
SKGDLVPLERQMLRNLLHFSEHDADDVAIPRGEITAVPASATFEELISAFAEHGHSRLPV
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCC
YGESLDEIVGMIHVKDVFGIVAGMALSGKAPPKDWTSLMRQPLFVPQARGALDVLADMRA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHC
SRTHLAVVIDEYSGTDGIITIEDLVEEIIGEIEDEHDDAPEELIRRIDPDTWDADARAEL
CCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHH
DDVAETVDRRLAEVEEDVDTLGGLAVVLAGEVPPVGRVLEHASGWRIEVTGGDERRLTRL
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCEEEECCCCHHHHHHH
RLHAPQAEPVDEE
HEECCCCCCCCCC
>Mature Secondary Structure 
PEGNGSAGESRSSDGDSSSRALWRAIRAFFRGPDHDQSLRAQIEEAIDEHEGEPHHEGA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
SKGDLVPLERQMLRNLLHFSEHDADDVAIPRGEITAVPASATFEELISAFAEHGHSRLPV
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCC
YGESLDEIVGMIHVKDVFGIVAGMALSGKAPPKDWTSLMRQPLFVPQARGALDVLADMRA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHC
SRTHLAVVIDEYSGTDGIITIEDLVEEIIGEIEDEHDDAPEELIRRIDPDTWDADARAEL
CCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCHHHH
DDVAETVDRRLAEVEEDVDTLGGLAVVLAGEVPPVGRVLEHASGWRIEVTGGDERRLTRL
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCEEEECCCCHHHHHHH
RLHAPQAEPVDEE
HEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA