| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87198990
Identifier: 87198990
GI number: 87198990
Start: 1014694
End: 1015128
Strand: Reverse
Name: 87198990
Synonym: Saro_0968
Alternate gene names: NA
Gene position: 1015128-1014694 (Counterclockwise)
Preceding gene: 87198991
Following gene: 87198989
Centisome position: 28.5
GC content: 70.34
Gene sequence:
>435_bases ATGTCCGCCAGCGACTCCACTGCCCGTTTCGCCGCCCTGATCGACCGCATGGCCCGTCCGCAGGACGTGAGGGGCCTCTC GCTCTCGGGCCTGCACATGGTCATGGCCATGCGGCTTTGCGCCCTGTTCGAGAACGCGGGCCGCGATCCCGTGCCCGACC TCGCCCAGCGCTACCGCAGCGTCGAGGCGGCCTGCGCGGTCCACGGCCTCGTCTCCACGATCAAGCAGGTCTGGCCCGAA CCCTTCATGGTCAACCGCCCCTGCTGCCTCGCGATGACGCCCGACGAGACGACGCTGGCCGCTCTCGTCCGCTCGGCCAA GGCAGCGGACCGTGATGCCTTCGCCCAGGCCATCGCTGGCTTTGTCCGCGCTGGCCGCCACGATGCGCTGTACGAGGCGA CGCTGCACGCGGTTGCCCTTATCCCCGCGGCCTGA
Upstream 100 bases:
>100_bases GAGATTCGCACGGCGGCGCTGAACCTAAATGAGAACGATTCGCATTGACCCGGCGATCAGCCGCTTCTAACCTGCGAATC GCTCGCAAGAAGGGAAGCTC
Downstream 100 bases:
>100_bases CCCTTCCCCAAACGCCCCTGGCGCGATAGGGCGGCGCGCATGGCCACCGTAACCCGCTTCGCGCCTTCGCCCACCGGCAA GCTCCATGTCGGCAACGTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MSASDSTARFAALIDRMARPQDVRGLSLSGLHMVMAMRLCALFENAGRDPVPDLAQRYRSVEAACAVHGLVSTIKQVWPE PFMVNRPCCLAMTPDETTLAALVRSAKAADRDAFAQAIAGFVRAGRHDALYEATLHAVALIPAA
Sequences:
>Translated_144_residues MSASDSTARFAALIDRMARPQDVRGLSLSGLHMVMAMRLCALFENAGRDPVPDLAQRYRSVEAACAVHGLVSTIKQVWPE PFMVNRPCCLAMTPDETTLAALVRSAKAADRDAFAQAIAGFVRAGRHDALYEATLHAVALIPAA >Mature_143_residues SASDSTARFAALIDRMARPQDVRGLSLSGLHMVMAMRLCALFENAGRDPVPDLAQRYRSVEAACAVHGLVSTIKQVWPEP FMVNRPCCLAMTPDETTLAALVRSAKAADRDAFAQAIAGFVRAGRHDALYEATLHAVALIPAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15466; Mature: 15335
Theoretical pI: Translated: 7.97; Mature: 7.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 7.6 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 7.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASDSTARFAALIDRMARPQDVRGLSLSGLHMVMAMRLCALFENAGRDPVPDLAQRYRS CCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH VEAACAVHGLVSTIKQVWPEPFMVNRPCCLAMTPDETTLAALVRSAKAADRDAFAQAIAG HHHHHHHHHHHHHHHHHCCCCCEECCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHH FVRAGRHDALYEATLHAVALIPAA HHHCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure SASDSTARFAALIDRMARPQDVRGLSLSGLHMVMAMRLCALFENAGRDPVPDLAQRYRS CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH VEAACAVHGLVSTIKQVWPEPFMVNRPCCLAMTPDETTLAALVRSAKAADRDAFAQAIAG HHHHHHHHHHHHHHHHHCCCCCEECCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHH FVRAGRHDALYEATLHAVALIPAA HHHCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA