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The map label for this gene is ydiU [C]

Identifier: 87198962

GI number: 87198962

Start: 987315

End: 988724

Strand: Reverse

Name: ydiU [C]

Synonym: Saro_0940

Alternate gene names: 87198962

Gene position: 988724-987315 (Counterclockwise)

Preceding gene: 87198970

Following gene: 87198961

Centisome position: 27.76

GC content: 67.87

Gene sequence:

>1410_bases
ATGAAGGCGCTCCCGCAAGACGCGATCTATCGACCGTCCCCCCGCATCATGGCCCTGGCCGACTGGATCGGCGATCCGGT
GCAGGCGGCGGACTTCCCCGAAACCCGCCTGCGCTGGCGCAACGACCGCGCGGCGGCGGAAATCGGGCTGGCAACGCTGG
ACGACGCGGCGTGGACGCGCGCGTTCGGGCGGTTCGAGCCCCTGCCCGACAACATGCCCGGACCGCTGGCCCTGCGTTAT
CACGGGCACCAGTTCCGCGTGTACAATCCCGAACTGGGCGACGGGCGCGGCTTCACGTTCGCGCAGATGCTAGACGGCTC
GGACCGGCTGATGGATCTTGGCACCAAGGGTTCGGGCCAGACACCGTGGAGCCGGCGAGGCGACGGGCGGCTGACGCTGA
AAGGCGCGGTGCGCGAGATCCTGGCGACGGAAATGCTCGGAGCGCTGGGCGTCAACACCAGCCGCACACTGTCGGTCATC
GAGACCGGGGAATCGCTTTGGCGCGGCGACGAGCCCTCGCCCACCCGCTCGGCGGTTCTGGTCCGGCTGAGCCACGGTCA
CATCCGCATCGGCACCTTCCAGCGCCTTTCCGTGCTGGAGCTTGATGACGAAATGGCGCAGCTTGTCGCCTATTGCCTCG
CCAATTTTCCCGGCAGCGCCTTTGCCGATGCGCCGCACCCGGCGGTGCGCTTCTACAACCAGGTGATCGAGCGCATGGCC
GACATGGCCGCCAGCTACATGGTCGCCGGGTTCGTCCACGGCGTGCTCAATTCCGACAACATGAACGTGACGGGCGAAAG
CTTCGACTATGGTCCGTGGCGCTGGCTGCCCACATGGGACCCGGGTTTCACCGCGGCCTATTTCGACCATGCCGGGCTCT
ATGCCTTCGGACGCCAACCCGAGGCGATCCACTGGAACTGCGGGCAGCTTGCGGTGGCGCTGCGCTCGCTGGTGGAAGCG
CCGCCGCTGGTCGAGGCGCTGAACCGCTTCCCCGACCTCTACCAGCAGGCGATGGCGCGGCGCTGGTGCTGGCGCCTGGG
CGTGGAGCCGCGCGGGATCGAGCAGGACACGGCGCTGATCGGTGCATGCGAGAAGGTCATGGTCAGCGAAAAGCTGGGGC
CGGACGCATTCTTCTTTACGCATCGGGGCGGACGCGGCCCATTTGCCGACAGTTCCGATGGAGCGGCGCTGCGCGAGATG
GTCGCACTGTACGAGGCCTCGCCAGACGACCATCCATACTGGTCGGACGAAGCACCGCAATCGCTGCTGATCGACGAGGT
CGAGGCGATCTGGGAACCGATCGCGACCGGCGACGACTGGTCCGCGCTTCACGCCAAGGTCGCGGCACTGCGGCGCATGG
GCGAGGCGCTGGGCCCTCGCCCGGAGCCATGGGGCCACGCAACTGCCTGA

Upstream 100 bases:

>100_bases
TCCAGTAGCGATCTTCGTATTCGGCCATTTCTTCTGGTATTCCGCGTCAAATCCATGGGGCCTGCTTGCGGGCAGGCTTG
CGCATGGCCACTATTGCCGG

Downstream 100 bases:

>100_bases
ATTACGTGGGCTCTGGCCTGTTAGGTGAAACTCGTTTAATCCGTAACCATCGCAGGGCTGCGGCGCCTCGCCAGGAGCGG
ACGCCGTATCAACGACAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MKALPQDAIYRPSPRIMALADWIGDPVQAADFPETRLRWRNDRAAAEIGLATLDDAAWTRAFGRFEPLPDNMPGPLALRY
HGHQFRVYNPELGDGRGFTFAQMLDGSDRLMDLGTKGSGQTPWSRRGDGRLTLKGAVREILATEMLGALGVNTSRTLSVI
ETGESLWRGDEPSPTRSAVLVRLSHGHIRIGTFQRLSVLELDDEMAQLVAYCLANFPGSAFADAPHPAVRFYNQVIERMA
DMAASYMVAGFVHGVLNSDNMNVTGESFDYGPWRWLPTWDPGFTAAYFDHAGLYAFGRQPEAIHWNCGQLAVALRSLVEA
PPLVEALNRFPDLYQQAMARRWCWRLGVEPRGIEQDTALIGACEKVMVSEKLGPDAFFFTHRGGRGPFADSSDGAALREM
VALYEASPDDHPYWSDEAPQSLLIDEVEAIWEPIATGDDWSALHAKVAALRRMGEALGPRPEPWGHATA

Sequences:

>Translated_469_residues
MKALPQDAIYRPSPRIMALADWIGDPVQAADFPETRLRWRNDRAAAEIGLATLDDAAWTRAFGRFEPLPDNMPGPLALRY
HGHQFRVYNPELGDGRGFTFAQMLDGSDRLMDLGTKGSGQTPWSRRGDGRLTLKGAVREILATEMLGALGVNTSRTLSVI
ETGESLWRGDEPSPTRSAVLVRLSHGHIRIGTFQRLSVLELDDEMAQLVAYCLANFPGSAFADAPHPAVRFYNQVIERMA
DMAASYMVAGFVHGVLNSDNMNVTGESFDYGPWRWLPTWDPGFTAAYFDHAGLYAFGRQPEAIHWNCGQLAVALRSLVEA
PPLVEALNRFPDLYQQAMARRWCWRLGVEPRGIEQDTALIGACEKVMVSEKLGPDAFFFTHRGGRGPFADSSDGAALREM
VALYEASPDDHPYWSDEAPQSLLIDEVEAIWEPIATGDDWSALHAKVAALRRMGEALGPRPEPWGHATA
>Mature_469_residues
MKALPQDAIYRPSPRIMALADWIGDPVQAADFPETRLRWRNDRAAAEIGLATLDDAAWTRAFGRFEPLPDNMPGPLALRY
HGHQFRVYNPELGDGRGFTFAQMLDGSDRLMDLGTKGSGQTPWSRRGDGRLTLKGAVREILATEMLGALGVNTSRTLSVI
ETGESLWRGDEPSPTRSAVLVRLSHGHIRIGTFQRLSVLELDDEMAQLVAYCLANFPGSAFADAPHPAVRFYNQVIERMA
DMAASYMVAGFVHGVLNSDNMNVTGESFDYGPWRWLPTWDPGFTAAYFDHAGLYAFGRQPEAIHWNCGQLAVALRSLVEA
PPLVEALNRFPDLYQQAMARRWCWRLGVEPRGIEQDTALIGACEKVMVSEKLGPDAFFFTHRGGRGPFADSSDGAALREM
VALYEASPDDHPYWSDEAPQSLLIDEVEAIWEPIATGDDWSALHAKVAALRRMGEALGPRPEPWGHATA

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=322, Percent_Identity=31.3664596273292, Blast_Score=155, Evalue=9e-38,
Organism=Escherichia coli, GI1787999, Length=303, Percent_Identity=34.983498349835, Blast_Score=181, Evalue=1e-46,
Organism=Saccharomyces cerevisiae, GI6325034, Length=351, Percent_Identity=27.6353276353276, Blast_Score=116, Evalue=6e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 51894; Mature: 51894

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALPQDAIYRPSPRIMALADWIGDPVQAADFPETRLRWRNDRAAAEIGLATLDDAAWTR
CCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCHHHHHCCCCHHHHHHCCHHHCHHHHHH
AFGRFEPLPDNMPGPLALRYHGHQFRVYNPELGDGRGFTFAQMLDGSDRLMDLGTKGSGQ
HHHCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCCHHHHHCCCHHHEECCCCCCCC
TPWSRRGDGRLTLKGAVREILATEMLGALGVNTSRTLSVIETGESLWRGDEPSPTRSAVL
CCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCEEHHHHCCHHHHCCCCCCCCCEEEE
VRLSHGHIRIGTFQRLSVLELDDEMAQLVAYCLANFPGSAFADAPHPAVRFYNQVIERMA
EEEECCEEEECCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
DMAASYMVAGFVHGVLNSDNMNVTGESFDYGPWRWLPTWDPGFTAAYFDHAGLYAFGRQP
HHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEEECCCCCCCCCCHHHHCCCEEEECCCC
EAIHWNCGQLAVALRSLVEAPPLVEALNRFPDLYQQAMARRWCWRLGVEPRGIEQDTALI
CEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
GACEKVMVSEKLGPDAFFFTHRGGRGPFADSSDGAALREMVALYEASPDDHPYWSDEAPQ
HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCH
SLLIDEVEAIWEPIATGDDWSALHAKVAALRRMGEALGPRPEPWGHATA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKALPQDAIYRPSPRIMALADWIGDPVQAADFPETRLRWRNDRAAAEIGLATLDDAAWTR
CCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCHHHHHCCCCHHHHHHCCHHHCHHHHHH
AFGRFEPLPDNMPGPLALRYHGHQFRVYNPELGDGRGFTFAQMLDGSDRLMDLGTKGSGQ
HHHCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCCHHHHHCCCHHHEECCCCCCCC
TPWSRRGDGRLTLKGAVREILATEMLGALGVNTSRTLSVIETGESLWRGDEPSPTRSAVL
CCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCEEHHHHCCHHHHCCCCCCCCCEEEE
VRLSHGHIRIGTFQRLSVLELDDEMAQLVAYCLANFPGSAFADAPHPAVRFYNQVIERMA
EEEECCEEEECCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
DMAASYMVAGFVHGVLNSDNMNVTGESFDYGPWRWLPTWDPGFTAAYFDHAGLYAFGRQP
HHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEEECCCCCCCCCCHHHHCCCEEEECCCC
EAIHWNCGQLAVALRSLVEAPPLVEALNRFPDLYQQAMARRWCWRLGVEPRGIEQDTALI
CEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
GACEKVMVSEKLGPDAFFFTHRGGRGPFADSSDGAALREMVALYEASPDDHPYWSDEAPQ
HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCH
SLLIDEVEAIWEPIATGDDWSALHAKVAALRRMGEALGPRPEPWGHATA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]