| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is yncD [H]
Identifier: 87198886
GI number: 87198886
Start: 914694
End: 916976
Strand: Reverse
Name: yncD [H]
Synonym: Saro_0864
Alternate gene names: 87198886
Gene position: 916976-914694 (Counterclockwise)
Preceding gene: 87198887
Following gene: 87198884
Centisome position: 25.75
GC content: 68.77
Gene sequence:
>2283_bases GTGCGCCTTGCCCTGACGTCAACCTGCCTACTGCTGTCGACATGCTGCGGCTCCGCGCTGGCGCAGGAAATTGCCGAACC GCCAGTGGTTACGGTGATCGCGGCGCCCGGTGGCGCGATCGACCGGGACGATGGTCTCGCGCTCGGCAGCGGGGACATCG ACCGCGCGGGTCAGCCTGATCTCCTTTCCGCGCTTGCCCGGACGGTGGCGGGGATCAGCCTGCAGGATGCGCAGGGCAAT CCCTGGCAACCCAACCTCGTCTATCGCGGTTTCACGGCATCCCCGCTCCAGGGACAGGCGCAGGGCCTTGCCGCCTATCT CGACGGCGGCCGGTTCAACCAGCCTTTTGGCGATACGGTGGGCTTCGACCTCATACCCGAGGTCGCGCTGCGCCGGGTCG ACGTCCTCGATGCCAGCCCGGTCTACGGGCTCAACGGCCTTGGCGGCGCGATCCTGCTGACCACGCACGACGGACGGAGC GCGCCAGGCATCGAGGCGGCGCTCTCTGCCGGGGCCTATGGCGAACGCGAGGGCAGCGTATCGGCCGGGGGCAGCAAGGG CGCCATATCGTGGTACGTCGCGGGCCAGCATCGGCGCGAGGACGGATGGCGCGACTTCAGCCCGTCACGGCTGACCAACG GCCTTGCCGACGTGGGTTTCGACACAGCGGGCGGCGGGCTTCATCTCAAGCTGCTTGGCGCGGATACCGACCTTACCGGC AATGGCGTCGCGCCAGTCGAACTGCTGGCGGCGCGGCGCAAGTCGGTGCTGAGCTGGCCCGACAGGAGCAAGTCGCAATT CCAGCGCGCCAGCCTGCACCCCTGGGTCGCGCTCTCGGAGCGGACCCGCATCGAGGCGACGCTCTATGCGCAGGACCTGA AGCTGAAGACGGTGAACGGCGACATCGCCGACATCGAACCCTGCGACGACGACGAAGCCCTCCTCTGCCTGGAAGCCGGC GATGACGAGGCCTTCCTGACCGATGCCGGCGGGCAGGCCATTGCGACGCCTGCCGGGGACGGTGCCTTCGGCGTACTCAA CCGCGGCGAGGCGCAGACCAGAGCCATGGGCGTGCTGGTGCAGATCGCGGACCGCAGGCCCCTTGGCGAGGGCGAGAATC ACCTGATCGTGGGCGCCAGCTTCGACACGAGCAGGACGCGGTTCGGCACATCGGTGGAACTCGGCGTCCTGACGCCGAAC CGGAGCGTCGAAGGGCTTGGCCCGAGGATCGTCCAGTCCGATGGCGCCGTGGGTCCGGTCGGCGTCATATCCCATACCCG CTACTGGGGGCTCTTCGCCCAGAACCTGCTGCCGCTCACCTCCAGGCTCTCGGCCGAAATCGGCCTGCGCTACAACCATG CCCGCGTCCGGCTGGACGATCGCATCGGCACCGCGCTCAACGGCGAACACGTCTATGCGCGGGTCAACCCGGGGCTTGAA CTGGACTGGCAGGTCCGGCCCTCGCTGGCCTTGCGCGCGGGCTATGCTGAGAACAGCCGCAATCCCACCCCGGCGGAGCT TTCCTGCGCCGACGAGAACGCTCCGTGCAGCCTGGCCAACTTCTTCGTGGCCGATCCCCATCTGCGGCAGGTCGTGGCCC GGACCTGGGAAATCGGTGCATCGGGCCGTGGCCGCCTGGCAGGATGGCAGGCAAGCTGGCTGTTGTCGGGGTATCGCACC ACCAACACCGATGACATCCAGCACATCGCCTCGCGCATCAGGGGGCGTGCATACTTCCAGAACATCGGCAGGACCCGGCG CCAGGGCGCGGAGCTGACCGCGCGCGCCAGCAAGGGCGGCTGGCAGGTTTCGGCAAGCTATGCCTTCACCGATGCACGGT TCCTCGACCCGCTCGTCCTGTCCAGCCCTTCCAACCCCTTCGCGGCGGCGGATGGAACGATCACGGTCCGCCCGGGAGAC CGCCTGCCCGGGATCGCGCGTCACGGGCTCAGCCTTGCCGCCGACTATGCCGGCAAGGGGTGGTCTCTGGGCGCGGACAT GATCGTGCGATCGGGGGTGCGGCTCGTCGGCGACGAAGCGAACGAGGTGCCCGAGGTCCCCGGCTATGCGGTCTTCAACG CACGCGCCGCGCTTCAGATCGTGCGCGGCGTCTCGCTGTTCGGCGAAGTGCGCAACCTGTTCGACCGCAAGTACGCGACG TTCGGCACCTTTGCCGAAATCGACGAGGTCTATCTTGCCGAAGCGCCCGACGCGCAGGACCCGCGCGCCCTCGGGCCCGC CGCCCCGCGCCGGTGGAGCGTCGGGGTCAAGGCAGCGTTCTGA
Upstream 100 bases:
>100_bases TCCTTTAGCCGCGTTCATCCATTTATAACGCACGTTAGGCTTGTGCGCTGCGCAAGCCCCCGCTTTAGCTGGAAAAAAGC TGAACCGGAGAGAATGTCCC
Downstream 100 bases:
>100_bases CTACTTGGCGAACGGGTTCTTGGGGCTGCGCAGGGTCAGGCGGATCGGCACGGCATCGAAGCCCAGCTCGCGCCGGATGC CGTTGATCAGATAGCGCCGG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 760; Mature: 760
Protein sequence:
>760_residues MRLALTSTCLLLSTCCGSALAQEIAEPPVVTVIAAPGGAIDRDDGLALGSGDIDRAGQPDLLSALARTVAGISLQDAQGN PWQPNLVYRGFTASPLQGQAQGLAAYLDGGRFNQPFGDTVGFDLIPEVALRRVDVLDASPVYGLNGLGGAILLTTHDGRS APGIEAALSAGAYGEREGSVSAGGSKGAISWYVAGQHRREDGWRDFSPSRLTNGLADVGFDTAGGGLHLKLLGADTDLTG NGVAPVELLAARRKSVLSWPDRSKSQFQRASLHPWVALSERTRIEATLYAQDLKLKTVNGDIADIEPCDDDEALLCLEAG DDEAFLTDAGGQAIATPAGDGAFGVLNRGEAQTRAMGVLVQIADRRPLGEGENHLIVGASFDTSRTRFGTSVELGVLTPN RSVEGLGPRIVQSDGAVGPVGVISHTRYWGLFAQNLLPLTSRLSAEIGLRYNHARVRLDDRIGTALNGEHVYARVNPGLE LDWQVRPSLALRAGYAENSRNPTPAELSCADENAPCSLANFFVADPHLRQVVARTWEIGASGRGRLAGWQASWLLSGYRT TNTDDIQHIASRIRGRAYFQNIGRTRRQGAELTARASKGGWQVSASYAFTDARFLDPLVLSSPSNPFAAADGTITVRPGD RLPGIARHGLSLAADYAGKGWSLGADMIVRSGVRLVGDEANEVPEVPGYAVFNARAALQIVRGVSLFGEVRNLFDRKYAT FGTFAEIDEVYLAEAPDAQDPRALGPAAPRRWSVGVKAAF
Sequences:
>Translated_760_residues MRLALTSTCLLLSTCCGSALAQEIAEPPVVTVIAAPGGAIDRDDGLALGSGDIDRAGQPDLLSALARTVAGISLQDAQGN PWQPNLVYRGFTASPLQGQAQGLAAYLDGGRFNQPFGDTVGFDLIPEVALRRVDVLDASPVYGLNGLGGAILLTTHDGRS APGIEAALSAGAYGEREGSVSAGGSKGAISWYVAGQHRREDGWRDFSPSRLTNGLADVGFDTAGGGLHLKLLGADTDLTG NGVAPVELLAARRKSVLSWPDRSKSQFQRASLHPWVALSERTRIEATLYAQDLKLKTVNGDIADIEPCDDDEALLCLEAG DDEAFLTDAGGQAIATPAGDGAFGVLNRGEAQTRAMGVLVQIADRRPLGEGENHLIVGASFDTSRTRFGTSVELGVLTPN RSVEGLGPRIVQSDGAVGPVGVISHTRYWGLFAQNLLPLTSRLSAEIGLRYNHARVRLDDRIGTALNGEHVYARVNPGLE LDWQVRPSLALRAGYAENSRNPTPAELSCADENAPCSLANFFVADPHLRQVVARTWEIGASGRGRLAGWQASWLLSGYRT TNTDDIQHIASRIRGRAYFQNIGRTRRQGAELTARASKGGWQVSASYAFTDARFLDPLVLSSPSNPFAAADGTITVRPGD RLPGIARHGLSLAADYAGKGWSLGADMIVRSGVRLVGDEANEVPEVPGYAVFNARAALQIVRGVSLFGEVRNLFDRKYAT FGTFAEIDEVYLAEAPDAQDPRALGPAAPRRWSVGVKAAF >Mature_760_residues MRLALTSTCLLLSTCCGSALAQEIAEPPVVTVIAAPGGAIDRDDGLALGSGDIDRAGQPDLLSALARTVAGISLQDAQGN PWQPNLVYRGFTASPLQGQAQGLAAYLDGGRFNQPFGDTVGFDLIPEVALRRVDVLDASPVYGLNGLGGAILLTTHDGRS APGIEAALSAGAYGEREGSVSAGGSKGAISWYVAGQHRREDGWRDFSPSRLTNGLADVGFDTAGGGLHLKLLGADTDLTG NGVAPVELLAARRKSVLSWPDRSKSQFQRASLHPWVALSERTRIEATLYAQDLKLKTVNGDIADIEPCDDDEALLCLEAG DDEAFLTDAGGQAIATPAGDGAFGVLNRGEAQTRAMGVLVQIADRRPLGEGENHLIVGASFDTSRTRFGTSVELGVLTPN RSVEGLGPRIVQSDGAVGPVGVISHTRYWGLFAQNLLPLTSRLSAEIGLRYNHARVRLDDRIGTALNGEHVYARVNPGLE LDWQVRPSLALRAGYAENSRNPTPAELSCADENAPCSLANFFVADPHLRQVVARTWEIGASGRGRLAGWQASWLLSGYRT TNTDDIQHIASRIRGRAYFQNIGRTRRQGAELTARASKGGWQVSASYAFTDARFLDPLVLSSPSNPFAAADGTITVRPGD RLPGIARHGLSLAADYAGKGWSLGADMIVRSGVRLVGDEANEVPEVPGYAVFNARAALQIVRGVSLFGEVRNLFDRKYAT FGTFAEIDEVYLAEAPDAQDPRALGPAAPRRWSVGVKAAF
Specific function: Probable receptor, tonB-dependent [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787723, Length=337, Percent_Identity=25.5192878338279, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 80590; Mature: 80590
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLALTSTCLLLSTCCGSALAQEIAEPPVVTVIAAPGGAIDRDDGLALGSGDIDRAGQPD CEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCH LLSALARTVAGISLQDAQGNPWQPNLVYRGFTASPLQGQAQGLAAYLDGGRFNQPFGDTV HHHHHHHHHHCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC GFDLIPEVALRRVDVLDASPVYGLNGLGGAILLTTHDGRSAPGIEAALSAGAYGEREGSV CHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCC SAGGSKGAISWYVAGQHRREDGWRDFSPSRLTNGLADVGFDTAGGGLHLKLLGADTDLTG CCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCEEEEEEECCCCCCC NGVAPVELLAARRKSVLSWPDRSKSQFQRASLHPWVALSERTRIEATLYAQDLKLKTVNG CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEECCCCEEEEEEEEECEEEEEECC DIADIEPCDDDEALLCLEAGDDEAFLTDAGGQAIATPAGDGAFGVLNRGEAQTRAMGVLV CCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEECCCCCCCEEECCCCCHHHHHHEEEE QIADRRPLGEGENHLIVGASFDTSRTRFGTSVELGVLTPNRSVEGLGPRIVQSDGAVGPV EEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCC GVISHTRYWGLFAQNLLPLTSRLSAEIGLRYNHARVRLDDRIGTALNGEHVYARVNPGLE HHHHCCHHHHHHHHHHHHHHHHHHHHHCEEECCEEEEECCCCCCEECCCEEEEEECCCCE LDWQVRPSLALRAGYAENSRNPTPAELSCADENAPCSLANFFVADPHLRQVVARTWEIGA EEEEECCCEEEEECCCCCCCCCCCCEEEECCCCCCCCHHHEEECCHHHHHHHHHHHHCCC SGRGRLAGWQASWLLSGYRTTNTDDIQHIASRIRGRAYFQNIGRTRRQGAELTARASKGG CCCCCEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC WQVSASYAFTDARFLDPLVLSSPSNPFAAADGTITVRPGDRLPGIARHGLSLAADYAGKG EEEEEEEEECCHHHHCHHEECCCCCCCEECCCEEEECCCCCCCCHHHCCCCEEHHCCCCC WSLGADMIVRSGVRLVGDEANEVPEVPGYAVFNARAALQIVRGVSLFGEVRNLFDRKYAT CCCCHHHHHHCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHC FGTFAEIDEVYLAEAPDAQDPRALGPAAPRRWSVGVKAAF CCCHHHHHHEEEECCCCCCCCCCCCCCCCCEEECCEEECC >Mature Secondary Structure MRLALTSTCLLLSTCCGSALAQEIAEPPVVTVIAAPGGAIDRDDGLALGSGDIDRAGQPD CEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCH LLSALARTVAGISLQDAQGNPWQPNLVYRGFTASPLQGQAQGLAAYLDGGRFNQPFGDTV HHHHHHHHHHCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC GFDLIPEVALRRVDVLDASPVYGLNGLGGAILLTTHDGRSAPGIEAALSAGAYGEREGSV CHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCC SAGGSKGAISWYVAGQHRREDGWRDFSPSRLTNGLADVGFDTAGGGLHLKLLGADTDLTG CCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCEEEEEEECCCCCCC NGVAPVELLAARRKSVLSWPDRSKSQFQRASLHPWVALSERTRIEATLYAQDLKLKTVNG CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEECCCCEEEEEEEEECEEEEEECC DIADIEPCDDDEALLCLEAGDDEAFLTDAGGQAIATPAGDGAFGVLNRGEAQTRAMGVLV CCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEECCCCCCCEEECCCCCHHHHHHEEEE QIADRRPLGEGENHLIVGASFDTSRTRFGTSVELGVLTPNRSVEGLGPRIVQSDGAVGPV EEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCC GVISHTRYWGLFAQNLLPLTSRLSAEIGLRYNHARVRLDDRIGTALNGEHVYARVNPGLE HHHHCCHHHHHHHHHHHHHHHHHHHHHCEEECCEEEEECCCCCCEECCCEEEEEECCCCE LDWQVRPSLALRAGYAENSRNPTPAELSCADENAPCSLANFFVADPHLRQVVARTWEIGA EEEEECCCEEEEECCCCCCCCCCCCEEEECCCCCCCCHHHEEECCHHHHHHHHHHHHCCC SGRGRLAGWQASWLLSGYRTTNTDDIQHIASRIRGRAYFQNIGRTRRQGAELTARASKGG CCCCCEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC WQVSASYAFTDARFLDPLVLSSPSNPFAAADGTITVRPGDRLPGIARHGLSLAADYAGKG EEEEEEEEECCHHHHCHHEECCCCCCCEECCCEEEECCCCCCCCHHHCCCCEEHHCCCCC WSLGADMIVRSGVRLVGDEANEVPEVPGYAVFNARAALQIVRGVSLFGEVRNLFDRKYAT CCCCHHHHHHCCCEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHC FGTFAEIDEVYLAEAPDAQDPRALGPAAPRRWSVGVKAAF CCCHHHHHHEEEECCCCCCCCCCCCCCCCCEEECCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]