| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87198887
Identifier: 87198887
GI number: 87198887
Start: 917069
End: 917890
Strand: Reverse
Name: 87198887
Synonym: Saro_0865
Alternate gene names: NA
Gene position: 917890-917069 (Counterclockwise)
Preceding gene: 87198889
Following gene: 87198886
Centisome position: 25.77
GC content: 62.9
Gene sequence:
>822_bases ATGCATGCGGCGGGTTTCACTGGGCATTCCAAGTGCTTCGCCGTGCTTGCCGGTGGACCGCCGCCTGATACAAATCGACG CATGACCCAGCAGAACGATAGCCGCCCCTGGCCCCAGGCCGGACGCGAACGCCTGATCTACCCCTCCCCGGTGGGCTGGA AGGGCACCGACTTCGTCGACAACGAAGAGGAACTGCTGCGGCGCCTGAATCCGAAGACCGTGTTCATGATGGGCGACAAC CCCGCCCTTCCCCGAATGCCCGAACGCCCGCGCCTGCTGGACTTCTTCCGGTGCAGGTTCGGCGACATCACCGTCCGCCA CCTGCTCGTCAGCGCAAAGCGCGCGCTTGACGACGGATTGCCGGAAAAAGTCGTGATCGCCTGTCTGCTCCACGACATTT CGAACGGATGCCTGATCCGCGCGGACCACGGATACTGGAGCGCGCAACTAATCGCGCCCTATGTCGATCCGGAAGTGGCC TTTGCGGTGAAATATCACCAGGCACTGCGCTATGTGCCCGACGAAAGCGTCGGCTATGCCTATCCCGACAGCTATCACAA GTTCTTCGGGCCGGACTACCAGCCGCCGGAATACCTGCTGCGCGACGCCGAGCATGCACGCGGCCACGAGTGGTACATGA CCACGCGCCAGGTGACGCTCTACGACACCTATTTCTTCGACGACTTCCCCGAAGTGGACCCGGAAGCCCTGGCCGACGTC ATCGGCCGCAATTTTCGCGAGCCCGACGAGGGCCTCGGCTTCGACGGCAGCGCGACCGCGCACATGTGGCGCACGATGAT CTGGCCCAACAATTTCCTTTAG
Upstream 100 bases:
>100_bases GGATTCGGGTCCGTTGTGGACCTTTCACAGGAGCAGTAATCAAAAATGATCGATTGTGAAAGACATAATATGATTGATTT TGATTATTCCATCCCGGACC
Downstream 100 bases:
>100_bases CCGCGTTCATCCATTTATAACGCACGTTAGGCTTGTGCGCTGCGCAAGCCCCCGCTTTAGCTGGAAAAAAGCTGAACCGG AGAGAATGTCCCGTGCGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 273; Mature: 273
Protein sequence:
>273_residues MHAAGFTGHSKCFAVLAGGPPPDTNRRMTQQNDSRPWPQAGRERLIYPSPVGWKGTDFVDNEEELLRRLNPKTVFMMGDN PALPRMPERPRLLDFFRCRFGDITVRHLLVSAKRALDDGLPEKVVIACLLHDISNGCLIRADHGYWSAQLIAPYVDPEVA FAVKYHQALRYVPDESVGYAYPDSYHKFFGPDYQPPEYLLRDAEHARGHEWYMTTRQVTLYDTYFFDDFPEVDPEALADV IGRNFREPDEGLGFDGSATAHMWRTMIWPNNFL
Sequences:
>Translated_273_residues MHAAGFTGHSKCFAVLAGGPPPDTNRRMTQQNDSRPWPQAGRERLIYPSPVGWKGTDFVDNEEELLRRLNPKTVFMMGDN PALPRMPERPRLLDFFRCRFGDITVRHLLVSAKRALDDGLPEKVVIACLLHDISNGCLIRADHGYWSAQLIAPYVDPEVA FAVKYHQALRYVPDESVGYAYPDSYHKFFGPDYQPPEYLLRDAEHARGHEWYMTTRQVTLYDTYFFDDFPEVDPEALADV IGRNFREPDEGLGFDGSATAHMWRTMIWPNNFL >Mature_273_residues MHAAGFTGHSKCFAVLAGGPPPDTNRRMTQQNDSRPWPQAGRERLIYPSPVGWKGTDFVDNEEELLRRLNPKTVFMMGDN PALPRMPERPRLLDFFRCRFGDITVRHLLVSAKRALDDGLPEKVVIACLLHDISNGCLIRADHGYWSAQLIAPYVDPEVA FAVKYHQALRYVPDESVGYAYPDSYHKFFGPDYQPPEYLLRDAEHARGHEWYMTTRQVTLYDTYFFDDFPEVDPEALADV IGRNFREPDEGLGFDGSATAHMWRTMIWPNNFL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31356; Mature: 31356
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHAAGFTGHSKCFAVLAGGPPPDTNRRMTQQNDSRPWPQAGRERLIYPSPVGWKGTDFVD CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCEECCCCCCCCCCCCCC NEEELLRRLNPKTVFMMGDNPALPRMPERPRLLDFFRCRFGDITVRHLLVSAKRALDDGL CHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC PEKVVIACLLHDISNGCLIRADHGYWSAQLIAPYVDPEVAFAVKYHQALRYVPDESVGYA CHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC YPDSYHKFFGPDYQPPEYLLRDAEHARGHEWYMTTRQVTLYDTYFFDDFPEVDPEALADV CCCCHHHHCCCCCCCHHHHHHCHHHCCCCEEEEEEEEEEEEEEEECCCCCCCCHHHHHHH IGRNFREPDEGLGFDGSATAHMWRTMIWPNNFL HHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure MHAAGFTGHSKCFAVLAGGPPPDTNRRMTQQNDSRPWPQAGRERLIYPSPVGWKGTDFVD CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCEECCCCCCCCCCCCCC NEEELLRRLNPKTVFMMGDNPALPRMPERPRLLDFFRCRFGDITVRHLLVSAKRALDDGL CHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC PEKVVIACLLHDISNGCLIRADHGYWSAQLIAPYVDPEVAFAVKYHQALRYVPDESVGYA CHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC YPDSYHKFFGPDYQPPEYLLRDAEHARGHEWYMTTRQVTLYDTYFFDDFPEVDPEALADV CCCCHHHHCCCCCCCHHHHHHCHHHCCCCEEEEEEEEEEEEEEEECCCCCCCCHHHHHHH IGRNFREPDEGLGFDGSATAHMWRTMIWPNNFL HHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA