Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

Click here to switch to the map view.

The map label for this gene is 87198734

Identifier: 87198734

GI number: 87198734

Start: 749871

End: 750902

Strand: Reverse

Name: 87198734

Synonym: Saro_0710

Alternate gene names: NA

Gene position: 750902-749871 (Counterclockwise)

Preceding gene: 87198735

Following gene: 87198733

Centisome position: 21.08

GC content: 62.5

Gene sequence:

>1032_bases
ATGTCCAAGATCAAGCGGGGCGTCAGCCTCTATTCCTTCCAGGAGGAGCTGTTCCTCGGCCGCATGAACGTGGAGGACTG
CGTGTCCTTCGCCGCATCCATCGGCGCGACAGGGATCGAGATCCTGCCCGAACAGAACATGCCGACATTCCCGAACCTGT
CCGACGCGCAGGTGGAGGAATGGAAGGCCATGGTCGCCCGCCACGGCTGCCACTTCACCGCCTATGACATGTTCCTCGAC
ACCAAGCTGCGCAAGGACCGGCTCATGTCGGACGACGAGCAGGTCGAAAGCATCGTTCGCGACCTCAGGCTCTGCAACCG
GCTGGGCATCCGCAACATGCGCGTCCTGGTCTTCGTGCGTCCCGACATCCTTGGTCGCTGCGTGCCCTATGCCGAAGAGC
TGGACGTCCACATGGGCGTCGAGGTTCACGCCCCGTGGCACCTCGAGCACGCATGGATCCTGCGCACGATCGAAGAAGCG
GACCGCCTCGGCACGAAGCACCTCGGCATCCTGCCCGACATGGGCATCTTCATGAAGCACTACCCGCCCGCATTCCGCGC
GCGCTTCGAGCGGCAGGGCGCCCGCCCCGAAGTTACGCAGTTCATCGTCGACCAGCACGAGGCCAAGATCATGGCCGAGT
ACACGATCTACGAAGTCGCGGTGAAGATGGGGGGCAACAAGGCCGAGGTTGCCATGGCCGAAACCCTGCGCCACGCGCCC
TACGCCAATCCGAAGCGGATCGCCGACTACGCGCCCTATTTCCACCACATCCAGGCCAAGTTCTACGAAATGGACGAGGA
CTGCACAGACCCGTCGATCGCCTACGACGAAGTGATCGACGCTCTGGTCGGCTGCGGATGGGAAGGAACCCTGTCGAGCG
AGTATGAAGGCAACCGCTGGATCCAGGACGTCCACGAGGTGGACAGCCGCGAACAGGTGCGTCGCCAGCACGTGATGTTC
GAACGCCTGATCGTCCAATCCGAAGCAAGACACGCCGGGAAGGAAGCCGCCTTATGTTCGACAAGTACCTGA

Upstream 100 bases:

>100_bases
ACGGCCTGACATTCCCACGTCCGTCCAAGCCGGCCAAGTCCGTCCGAACCGGCCAAGTCTGTCCAAACCGGCCAAGTCTG
TCCAAACCGGAAAGTCTCCA

Downstream 100 bases:

>100_bases
TCGACGCAGCCACCGTGCACAACACCGGCCCGGTAGACGCACCCACCGGTTTCTCGTTCCAGGCCAAGCTCGGCTATTAT
CGCGGCCTCGGCCTATCGAT

Product: xylose isomerase-like TIM barrel domain-containing protein

Products: NA

Alternate protein names: Xylose Isomerase Domain-Containing Protein

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MSKIKRGVSLYSFQEELFLGRMNVEDCVSFAASIGATGIEILPEQNMPTFPNLSDAQVEEWKAMVARHGCHFTAYDMFLD
TKLRKDRLMSDDEQVESIVRDLRLCNRLGIRNMRVLVFVRPDILGRCVPYAEELDVHMGVEVHAPWHLEHAWILRTIEEA
DRLGTKHLGILPDMGIFMKHYPPAFRARFERQGARPEVTQFIVDQHEAKIMAEYTIYEVAVKMGGNKAEVAMAETLRHAP
YANPKRIADYAPYFHHIQAKFYEMDEDCTDPSIAYDEVIDALVGCGWEGTLSSEYEGNRWIQDVHEVDSREQVRRQHVMF
ERLIVQSEARHAGKEAALCSTST

Sequences:

>Translated_343_residues
MSKIKRGVSLYSFQEELFLGRMNVEDCVSFAASIGATGIEILPEQNMPTFPNLSDAQVEEWKAMVARHGCHFTAYDMFLD
TKLRKDRLMSDDEQVESIVRDLRLCNRLGIRNMRVLVFVRPDILGRCVPYAEELDVHMGVEVHAPWHLEHAWILRTIEEA
DRLGTKHLGILPDMGIFMKHYPPAFRARFERQGARPEVTQFIVDQHEAKIMAEYTIYEVAVKMGGNKAEVAMAETLRHAP
YANPKRIADYAPYFHHIQAKFYEMDEDCTDPSIAYDEVIDALVGCGWEGTLSSEYEGNRWIQDVHEVDSREQVRRQHVMF
ERLIVQSEARHAGKEAALCSTST
>Mature_342_residues
SKIKRGVSLYSFQEELFLGRMNVEDCVSFAASIGATGIEILPEQNMPTFPNLSDAQVEEWKAMVARHGCHFTAYDMFLDT
KLRKDRLMSDDEQVESIVRDLRLCNRLGIRNMRVLVFVRPDILGRCVPYAEELDVHMGVEVHAPWHLEHAWILRTIEEAD
RLGTKHLGILPDMGIFMKHYPPAFRARFERQGARPEVTQFIVDQHEAKIMAEYTIYEVAVKMGGNKAEVAMAETLRHAPY
ANPKRIADYAPYFHHIQAKFYEMDEDCTDPSIAYDEVIDALVGCGWEGTLSSEYEGNRWIQDVHEVDSREQVRRQHVMFE
RLIVQSEARHAGKEAALCSTST

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39394; Mature: 39263

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIKRGVSLYSFQEELFLGRMNVEDCVSFAASIGATGIEILPEQNMPTFPNLSDAQVEE
CCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH
WKAMVARHGCHFTAYDMFLDTKLRKDRLMSDDEQVESIVRDLRLCNRLGIRNMRVLVFVR
HHHHHHHCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
PDILGRCVPYAEELDVHMGVEVHAPWHLEHAWILRTIEEADRLGTKHLGILPDMGIFMKH
CHHHHHHCCCHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHC
YPPAFRARFERQGARPEVTQFIVDQHEAKIMAEYTIYEVAVKMGGNKAEVAMAETLRHAP
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
YANPKRIADYAPYFHHIQAKFYEMDEDCTDPSIAYDEVIDALVGCGWEGTLSSEYEGNRW
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHH
IQDVHEVDSREQVRRQHVMFERLIVQSEARHAGKEAALCSTST
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SKIKRGVSLYSFQEELFLGRMNVEDCVSFAASIGATGIEILPEQNMPTFPNLSDAQVEE
CHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH
WKAMVARHGCHFTAYDMFLDTKLRKDRLMSDDEQVESIVRDLRLCNRLGIRNMRVLVFVR
HHHHHHHCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
PDILGRCVPYAEELDVHMGVEVHAPWHLEHAWILRTIEEADRLGTKHLGILPDMGIFMKH
CHHHHHHCCCHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHC
YPPAFRARFERQGARPEVTQFIVDQHEAKIMAEYTIYEVAVKMGGNKAEVAMAETLRHAP
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
YANPKRIADYAPYFHHIQAKFYEMDEDCTDPSIAYDEVIDALVGCGWEGTLSSEYEGNRW
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHH
IQDVHEVDSREQVRRQHVMFERLIVQSEARHAGKEAALCSTST
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA