| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87198735
Identifier: 87198735
GI number: 87198735
Start: 750994
End: 752226
Strand: Reverse
Name: 87198735
Synonym: Saro_0711
Alternate gene names: NA
Gene position: 752226-750994 (Counterclockwise)
Preceding gene: 87198741
Following gene: 87198734
Centisome position: 21.12
GC content: 64.8
Gene sequence:
>1233_bases ATGACCAGTCAGACCACAGGCGGGACCGGGATTGAAACCGGTGGCCATCGGAGGCCCGGTGTCGCACAGGGCCTCACCAT CGTTCTCACCGGCTTCCTGCCTATCATCGCGATCGTCTCGATGTTCCCGGCCGTTCCGGCCATGATTTCGCACTTCGCCA GCGATCCCTCCGCCCCGACCAAGGTTCCGGCGATGGTATCTGCTCCAGGACTCACCGTGGCGATTCTCGCGCTCTTCGCG GGCTTGATGGTCGACAAGTTCGGACGTCGTCGCCTTCTGCTGCTGTCAACCGGGCTCTACGGCTTCATCGGCATGGCGCC GATGTTCCTTCAGGACCTCGACCAGATCTATGCGTCGCGCCTTCTGCTGGGCGTGGCCGAGGCCGCCATCCTGACCACGG CCAACACCCTCATCGGCGACTATTGGGACGAGGCGGGGCGCCACCGCTGGCTGTCCCTGCAGGGAATCATCGGTCCGTTC TTCGGCAGTGCGGTCATTTTCACCTCCGGCTACCTCGCGTCGATGAGCTGGGACTCGGTGTTCCTGATCTACAGCGTCGG CTTTGTCGCGTTCCTCGCGATGTTTGCCTTCATCTACGAGCCCGAGAACGACGAGACCGCCCGCAAGATGCTTGGCATCG GCGCGGCGGCGAGCACCCCGTTCCCGTGGAAGGGTGTGCTGCTGTTCAGCGTCGTCACCCTGTTCGGCGGCGCGCTCTAC TATGTCTTCATCATCAATGGCGGAATCGTCTGGCAGGAACTGGGCGTGTCCGACCCGGCGGAAATCGGCCGCCTTACGAC CATCCCGAGCATGTTCGTGATCGTCGGCGCGCTTATCTTCTGGGCCACCGGCCGCTTCGGCCCGCGCATCCAGCTGACCG TATTCCTCTGCCTCCTTGGGTCAGGCCTTGCGGTCATCGGCTCCGCAAGCGACTGGAAAGGCATGGTCGCGGGCATGGCG CTGCAGCAGACCGGTGCGGGCATGGCCGTCCCGACCTTGATCGCCTGGGCGCAGAGCTACCTGCCGTTCGAGCACCGGGG CCGCGGCATGGGCGTCTGGACCTCGACATTCTTCTTCGGCCAGTTCGTCTCGCCGCTGCTCGTCAGCGTCGCGCGGACTT CGGCGGGCTCGATGCAGGGCGCGTTCGTGATTGCCGGATTGCTCGGCCTCGTGATCGCTGCCGTCACCTGGTTCATCGTC ACCCCGCGCCAACCGCAGTTGGCCACGGCCTGA
Upstream 100 bases:
>100_bases TCATCCATCGCTTTCGCTTGACTCCGGCGCGTGCGGGCAGGATACGATTTAAGAATAATGGTTCTAATAAGGTGCGCGCC TGCGTGCCGAGGGAGATTCG
Downstream 100 bases:
>100_bases CATTCCCACGTCCGTCCAAGCCGGCCAAGTCCGTCCGAACCGGCCAAGTCTGTCCAAACCGGCCAAGTCTGTCCAAACCG GAAAGTCTCCAATGTCCAAG
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; MFS Permease; Facilitator Family Protein; Facilitator Family Transporter; Facilitator Superfamily Permease; Transporter Facilitator Family; Efflux Protein; MFS Transport System Component; Facilitator Superfamily Transporter; Facilitator Superfamily Efflux Protein; Transporter-Like Membrane Protein
Number of amino acids: Translated: 410; Mature: 409
Protein sequence:
>410_residues MTSQTTGGTGIETGGHRRPGVAQGLTIVLTGFLPIIAIVSMFPAVPAMISHFASDPSAPTKVPAMVSAPGLTVAILALFA GLMVDKFGRRRLLLLSTGLYGFIGMAPMFLQDLDQIYASRLLLGVAEAAILTTANTLIGDYWDEAGRHRWLSLQGIIGPF FGSAVIFTSGYLASMSWDSVFLIYSVGFVAFLAMFAFIYEPENDETARKMLGIGAAASTPFPWKGVLLFSVVTLFGGALY YVFIINGGIVWQELGVSDPAEIGRLTTIPSMFVIVGALIFWATGRFGPRIQLTVFLCLLGSGLAVIGSASDWKGMVAGMA LQQTGAGMAVPTLIAWAQSYLPFEHRGRGMGVWTSTFFFGQFVSPLLVSVARTSAGSMQGAFVIAGLLGLVIAAVTWFIV TPRQPQLATA
Sequences:
>Translated_410_residues MTSQTTGGTGIETGGHRRPGVAQGLTIVLTGFLPIIAIVSMFPAVPAMISHFASDPSAPTKVPAMVSAPGLTVAILALFA GLMVDKFGRRRLLLLSTGLYGFIGMAPMFLQDLDQIYASRLLLGVAEAAILTTANTLIGDYWDEAGRHRWLSLQGIIGPF FGSAVIFTSGYLASMSWDSVFLIYSVGFVAFLAMFAFIYEPENDETARKMLGIGAAASTPFPWKGVLLFSVVTLFGGALY YVFIINGGIVWQELGVSDPAEIGRLTTIPSMFVIVGALIFWATGRFGPRIQLTVFLCLLGSGLAVIGSASDWKGMVAGMA LQQTGAGMAVPTLIAWAQSYLPFEHRGRGMGVWTSTFFFGQFVSPLLVSVARTSAGSMQGAFVIAGLLGLVIAAVTWFIV TPRQPQLATA >Mature_409_residues TSQTTGGTGIETGGHRRPGVAQGLTIVLTGFLPIIAIVSMFPAVPAMISHFASDPSAPTKVPAMVSAPGLTVAILALFAG LMVDKFGRRRLLLLSTGLYGFIGMAPMFLQDLDQIYASRLLLGVAEAAILTTANTLIGDYWDEAGRHRWLSLQGIIGPFF GSAVIFTSGYLASMSWDSVFLIYSVGFVAFLAMFAFIYEPENDETARKMLGIGAAASTPFPWKGVLLFSVVTLFGGALYY VFIINGGIVWQELGVSDPAEIGRLTTIPSMFVIVGALIFWATGRFGPRIQLTVFLCLLGSGLAVIGSASDWKGMVAGMAL QQTGAGMAVPTLIAWAQSYLPFEHRGRGMGVWTSTFFFGQFVSPLLVSVARTSAGSMQGAFVIAGLLGLVIAAVTWFIVT PRQPQLATA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43522; Mature: 43391
Theoretical pI: Translated: 8.92; Mature: 8.92
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSQTTGGTGIETGGHRRPGVAQGLTIVLTGFLPIIAIVSMFPAVPAMISHFASDPSAPT CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC KVPAMVSAPGLTVAILALFAGLMVDKFGRRRLLLLSTGLYGFIGMAPMFLQDLDQIYASR CCCCHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH LLLGVAEAAILTTANTLIGDYWDEAGRHRWLSLQGIIGPFFGSAVIFTSGYLASMSWDSV HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHCCHHHHHCCHHEECCCCHH FLIYSVGFVAFLAMFAFIYEPENDETARKMLGIGAAASTPFPWKGVLLFSVVTLFGGALY HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHE YVFIINGGIVWQELGVSDPAEIGRLTTIPSMFVIVGALIFWATGRFGPRIQLTVFLCLLG EEEEECCCEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC SGLAVIGSASDWKGMVAGMALQQTGAGMAVPTLIAWAQSYLPFEHRGRGMGVWTSTFFFG CCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHH QFVSPLLVSVARTSAGSMQGAFVIAGLLGLVIAAVTWFIVTPRQPQLATA HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCC >Mature Secondary Structure TSQTTGGTGIETGGHRRPGVAQGLTIVLTGFLPIIAIVSMFPAVPAMISHFASDPSAPT CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC KVPAMVSAPGLTVAILALFAGLMVDKFGRRRLLLLSTGLYGFIGMAPMFLQDLDQIYASR CCCCHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH LLLGVAEAAILTTANTLIGDYWDEAGRHRWLSLQGIIGPFFGSAVIFTSGYLASMSWDSV HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHCCHHHHHCCHHEECCCCHH FLIYSVGFVAFLAMFAFIYEPENDETARKMLGIGAAASTPFPWKGVLLFSVVTLFGGALY HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHE YVFIINGGIVWQELGVSDPAEIGRLTTIPSMFVIVGALIFWATGRFGPRIQLTVFLCLLG EEEEECCCEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC SGLAVIGSASDWKGMVAGMALQQTGAGMAVPTLIAWAQSYLPFEHRGRGMGVWTSTFFFG CCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHH QFVSPLLVSVARTSAGSMQGAFVIAGLLGLVIAAVTWFIVTPRQPQLATA HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA