| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is yihX [C]
Identifier: 87198594
GI number: 87198594
Start: 616832
End: 617476
Strand: Reverse
Name: yihX [C]
Synonym: Saro_0570
Alternate gene names: 87198594
Gene position: 617476-616832 (Counterclockwise)
Preceding gene: 87198598
Following gene: 87198592
Centisome position: 17.34
GC content: 67.29
Gene sequence:
>645_bases ATGACTTACGCAGCGGTGATCTTCGACTTCGGCGGCGTGATCACGTCCTCGCCCTTCGAGGCTTTCAACCGGCTCGAGGC CGAGCGCGGCCTTCCCCGCGATCTCGTCCGGCGGATCAATGCCCTGAACCCGGACACGAACGCATGGGCCCTGTTCGAAC GAGCCGAGATCGGCGCGGCGGAATTCGACCGGCTGTTCTCGGAAGAGGCGCGCGCGCTGGGGCACGAGCTGGACGGCGCT TCGGTGCTGGCGGTTCTCGCCGGCGCGGTGCGCCCGGCAATGGTTTCCGCGCTCGACCGCCTGGCGGCCGAAGGCTACCG CCTGGGCTGCATCACCAACAACGTGCCCGCCGGACACGGCGCTGGCATGGCCCGGAGCGCCGACGCGCACGACGAACTGG AACAGATCTTCGCCCGGTTCGAGCATGTGATCGAAAGCAGCAAGGCCGGGGTCAGGAAGCCCGATCCGCGCATTTACCTG ATGATGTGCGACGCGCTTGGCCTGGAGCCGCGCCAGTGCGTCTATCTCGACGACCTTGGCATCAACTGCAAGCCGGCCGC CGGTCTGGGGATGCATGCGATCAAGGTGACCGGCGGGGATCAGGCGCTGGCCGATCTTGGCGCAGTGCTCGGGCTGGCTT TCTGA
Upstream 100 bases:
>100_bases GTGCGCCTCACCATGATCCACGTCAAATTCCCGGCATATTGGTAGGTTGCCGGATTTCATCGTCCGGTTAAAGGAGTGGG CAGACGGCACGGGAGGATGA
Downstream 100 bases:
>100_bases AGGCCTTCTGGCTGAAGGCCTTCTGGCGCGAAGCCGAGCGAACAGGGGCTAGCCGTCGATCCGCAGATCTCCGGCGCGGC GGAACAGTTCGAGCACGAGG
Product: epoxide hydrolase domain-containing phosphatase
Products: NA
Alternate protein names: Hydrolase; HAD Family Phosphatase; Epoxide Hydrolase Domain-Containing Phosphatase; Phosphatase; HAD Superfamily Hydrolase; Hydrolase Haloacid Dehalogenase-Like Family; Phosphoglycolate Phosphatase; Epoxide Hydrolase-Like Phosphatase; Epoxide Hydrolase
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MTYAAVIFDFGGVITSSPFEAFNRLEAERGLPRDLVRRINALNPDTNAWALFERAEIGAAEFDRLFSEEARALGHELDGA SVLAVLAGAVRPAMVSALDRLAAEGYRLGCITNNVPAGHGAGMARSADAHDELEQIFARFEHVIESSKAGVRKPDPRIYL MMCDALGLEPRQCVYLDDLGINCKPAAGLGMHAIKVTGGDQALADLGAVLGLAF
Sequences:
>Translated_214_residues MTYAAVIFDFGGVITSSPFEAFNRLEAERGLPRDLVRRINALNPDTNAWALFERAEIGAAEFDRLFSEEARALGHELDGA SVLAVLAGAVRPAMVSALDRLAAEGYRLGCITNNVPAGHGAGMARSADAHDELEQIFARFEHVIESSKAGVRKPDPRIYL MMCDALGLEPRQCVYLDDLGINCKPAAGLGMHAIKVTGGDQALADLGAVLGLAF >Mature_213_residues TYAAVIFDFGGVITSSPFEAFNRLEAERGLPRDLVRRINALNPDTNAWALFERAEIGAAEFDRLFSEEARALGHELDGAS VLAVLAGAVRPAMVSALDRLAAEGYRLGCITNNVPAGHGAGMARSADAHDELEQIFARFEHVIESSKAGVRKPDPRIYLM MCDALGLEPRQCVYLDDLGINCKPAAGLGMHAIKVTGGDQALADLGAVLGLAF
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI48976061, Length=221, Percent_Identity=33.0316742081448, Blast_Score=108, Evalue=3e-24, Organism=Homo sapiens, GI211971008, Length=205, Percent_Identity=33.1707317073171, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI27597073, Length=230, Percent_Identity=28.695652173913, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17562446, Length=221, Percent_Identity=32.1266968325792, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17557590, Length=222, Percent_Identity=27.4774774774775, Blast_Score=86, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22855; Mature: 22724
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYAAVIFDFGGVITSSPFEAFNRLEAERGLPRDLVRRINALNPDTNAWALFERAEIGAA CCCEEEEEHHCCHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEHHHHHCCHH EFDRLFSEEARALGHELDGASVLAVLAGAVRPAMVSALDRLAAEGYRLGCITNNVPAGHG HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCC AGMARSADAHDELEQIFARFEHVIESSKAGVRKPDPRIYLMMCDALGLEPRQCVYLDDLG CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCC INCKPAAGLGMHAIKVTGGDQALADLGAVLGLAF CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCC >Mature Secondary Structure TYAAVIFDFGGVITSSPFEAFNRLEAERGLPRDLVRRINALNPDTNAWALFERAEIGAA CCEEEEEHHCCHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEHHHHHCCHH EFDRLFSEEARALGHELDGASVLAVLAGAVRPAMVSALDRLAAEGYRLGCITNNVPAGHG HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCC AGMARSADAHDELEQIFARFEHVIESSKAGVRKPDPRIYLMMCDALGLEPRQCVYLDDLG CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCC INCKPAAGLGMHAIKVTGGDQALADLGAVLGLAF CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA