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The map label for this gene is lpsI [H]

Identifier: 87198592

GI number: 87198592

Start: 615106

End: 615816

Strand: Reverse

Name: lpsI [H]

Synonym: Saro_0568

Alternate gene names: 87198592

Gene position: 615816-615106 (Counterclockwise)

Preceding gene: 87198594

Following gene: 87198591

Centisome position: 17.29

GC content: 64.28

Gene sequence:

>711_bases
ATGTCGAACAAGCTCTATCCGGATGCCGCCGCCGCGCTCGAAGGCCTGCTGCGCGATGGCCTGCTCATCGCCTGTGGCGG
ATTCGGCCTTTGCGGCATCCCCGAGCGGCTGCTCGATGCGGTGCGCGATTCGGGGGTGAAGGACCTGACCTTCGCGTCGA
ACAATGCCGGGATCGACAACGAAGGCATCGGCAAGCTGCTGCGCACGCGGCAGGTAAAGAAGATGATCTCCAGCTATGTC
GGCGAGAACAAGGAGTTCGAGCGGCAGTACCTTTCGGGCGAGCTTGAGGTCGAGTTCTGCCCGCAAGGCACGCTTGCCGA
GCGCATGCGCGCAGGCGGCGCGGGCATTCCGGGCTTCTACACCAAGACCGGCGTCGGCACGCTGGTGGCGGAAGGCAAGG
AAACGAAGCTCTTCGACGGGCAGGAATATGTCCTCGAACGCGGCATCTTTGCCGATCTCGCGCTGGTGAAGGCGTGGAAG
GCCGACGAAACCGGCAACGTCGTGTTCCGCAAGACTGCGCGCAACTTCAACGTTCCGGCCGCGACTTGCGGCAAGGTCTG
CGTGGTCGAGGTGGAGGAAGTTGTGCCTGCGGGCAGCCTCGATCCGGACAGCATCCACCTGCCGGGCGTCTATGTGCAGC
GCATGATCGTGGGCGCGCCCTACGACAAGAAGATCGAGTTCCGCACCGTTCGCGAGCGGGAGGCGGCGTGA

Upstream 100 bases:

>100_bases
CTTCATCCGATCAGAGCTTGTTATCGATTACGATAAAAAACAATCGCTCTTTTCGATTTATGTCCTGTGCTACCAGCGCC
TCCGAAAGGGAGAGTCCTGA

Downstream 100 bases:

>100_bases
GATTGCGCGCGCTGCCACTTGCGGCAGTGCTGGCGATGGCCGCAACGCAGCTTGGCGGCTGCGTGGCGGCGGCGGCGCTG
GTGCCGCTCGCGGCCGGTGG

Product: 3-oxoacid CoA-transferase subunit A

Products: NA

Alternate protein names: Succinyl CoA:3-oxoacid CoA-transferase; OXCT A [H]

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSNKLYPDAAAALEGLLRDGLLIACGGFGLCGIPERLLDAVRDSGVKDLTFASNNAGIDNEGIGKLLRTRQVKKMISSYV
GENKEFERQYLSGELEVEFCPQGTLAERMRAGGAGIPGFYTKTGVGTLVAEGKETKLFDGQEYVLERGIFADLALVKAWK
ADETGNVVFRKTARNFNVPAATCGKVCVVEVEEVVPAGSLDPDSIHLPGVYVQRMIVGAPYDKKIEFRTVREREAA

Sequences:

>Translated_236_residues
MSNKLYPDAAAALEGLLRDGLLIACGGFGLCGIPERLLDAVRDSGVKDLTFASNNAGIDNEGIGKLLRTRQVKKMISSYV
GENKEFERQYLSGELEVEFCPQGTLAERMRAGGAGIPGFYTKTGVGTLVAEGKETKLFDGQEYVLERGIFADLALVKAWK
ADETGNVVFRKTARNFNVPAATCGKVCVVEVEEVVPAGSLDPDSIHLPGVYVQRMIVGAPYDKKIEFRTVREREAA
>Mature_235_residues
SNKLYPDAAAALEGLLRDGLLIACGGFGLCGIPERLLDAVRDSGVKDLTFASNNAGIDNEGIGKLLRTRQVKKMISSYVG
ENKEFERQYLSGELEVEFCPQGTLAERMRAGGAGIPGFYTKTGVGTLVAEGKETKLFDGQEYVLERGIFADLALVKAWKA
DETGNVVFRKTARNFNVPAATCGKVCVVEVEEVVPAGSLDPDSIHLPGVYVQRMIVGAPYDKKIEFRTVREREAA

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG1788

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit A family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=248, Percent_Identity=55.241935483871, Blast_Score=280, Evalue=1e-75,
Organism=Homo sapiens, GI11545841, Length=249, Percent_Identity=50.2008032128514, Blast_Score=231, Evalue=4e-61,
Organism=Escherichia coli, GI1788551, Length=203, Percent_Identity=45.8128078817734, Blast_Score=189, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI17531517, Length=246, Percent_Identity=51.219512195122, Blast_Score=253, Evalue=4e-68,
Organism=Drosophila melanogaster, GI24655794, Length=249, Percent_Identity=50.6024096385542, Blast_Score=254, Evalue=4e-68,
Organism=Drosophila melanogaster, GI21358325, Length=247, Percent_Identity=51.0121457489879, Blast_Score=254, Evalue=5e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012792
- InterPro:   IPR004165
- InterPro:   IPR004163 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 25568; Mature: 25436

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKLYPDAAAALEGLLRDGLLIACGGFGLCGIPERLLDAVRDSGVKDLTFASNNAGIDN
CCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCC
EGIGKLLRTRQVKKMISSYVGENKEFERQYLSGELEVEFCPQGTLAERMRAGGAGIPGFY
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCCCC
TKTGVGTLVAEGKETKLFDGQEYVLERGIFADLALVKAWKADETGNVVFRKTARNFNVPA
HHCCCCCEEECCCCCEEECCHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCH
ATCGKVCVVEVEEVVPAGSLDPDSIHLPGVYVQRMIVGAPYDKKIEFRTVREREAA
HCCCCEEEEEHHHHCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCHHEEHHHHCCC
>Mature Secondary Structure 
SNKLYPDAAAALEGLLRDGLLIACGGFGLCGIPERLLDAVRDSGVKDLTFASNNAGIDN
CCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCC
EGIGKLLRTRQVKKMISSYVGENKEFERQYLSGELEVEFCPQGTLAERMRAGGAGIPGFY
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCCCC
TKTGVGTLVAEGKETKLFDGQEYVLERGIFADLALVKAWKADETGNVVFRKTARNFNVPA
HHCCCCCEEECCCCCEEECCHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCH
ATCGKVCVVEVEEVVPAGSLDPDSIHLPGVYVQRMIVGAPYDKKIEFRTVREREAA
HCCCCEEEEEHHHHCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCHHEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9385134; 11589581 [H]