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The map label for this gene is bepC [H]

Identifier: 87198271

GI number: 87198271

Start: 254975

End: 256591

Strand: Direct

Name: bepC [H]

Synonym: Saro_0246

Alternate gene names: 87198271

Gene position: 254975-256591 (Clockwise)

Preceding gene: 87198270

Following gene: 87198272

Centisome position: 7.16

GC content: 69.2

Gene sequence:

>1617_bases
ATGAGGCCAAAGGCGAACGGCGGCGTGGCATGGCTGGCTCTGCTTCTGGCGGAAACAGCCACAGGCACCGTCGTATCCAC
AGTCGCACCCACCGTCGCCCGGGCGCAGGAGATCGCGAGCACTTTCGTCGAGGCGCCGGAACTGCCACCCGAAACCCCGT
CCGACATCGCCGACCAGTTGCGGGAACCGACCCCCGTGGCGGCCCTGCCGGACGCGCTGCGCCGTGCCTACTGGTCCAAT
CCCAGCCTTCAGGCCCAGCGCGCATCGGTACGCGGGGCGGACTGGCGCATTCCCCAGGCCCGCGCCGCCTATGGACCCAA
GCTCAGCGCATCGGGCACCTATGGCTGGCAGCGCGACAACTTCGAGACCCCGGCGGGCGTCTATACCGCGTTCAATGGCT
GGACGAGCACGGCACAGGCGATCCTCACGCAGCCCCTGTTCACCTTCGGGCGAAATGTCGCGGCCGAACAGTTCGCGTCC
GCGCAAGTGGAATACCAGCGCAACGTCCTGCGCTCGACCGAGCAGCAGACCATGCTCGATGCGATTGGCGCCTATGTCGG
CGTGCTGCGCGACCGCGCCGCCGTGGGCATCGCGCGCGACAACCTTGCGCTGCTCGAACAGGAGCTTTCCGACAACCAGG
CCCGCTTCAACGCGCGCGAGGTGACGTCGACCGACGTGCAGCAGGTGGAAACCCGCGTCGATCTGGGCCGGGCACAATTG
CTCGCCGCGCAGCGTGCCGCCGCCGGAAGTGAGGCCACGTTCCTTCGTACCACCGGTGCGCCGGCCGCCGAGAATGCCGC
CGCGCCCAATCCGTTGAGCCTGCCCGTGCGGACGATCGAGGAGGCCTATCTCTTTGCCGAACTGCACAATCCCGTGCTGT
TCGCGGCCCAGGCGCGCGAGAAGGTTTCGCGGGCCCAGGCGGCCAGCGCGCGGGCGGACCTGATGCCGCGCGTCGACCTG
CGCGGATCAGCCGATTACGGCACGCTTTCGCCCTATTCGAATGCGCTTCGCCAGAACACCCTGCGCGGCGAGGTGGTGCT
GAGCGCACCGCTGTTCGAAAGCGGCGTGCGCCGCGCGCGTCTTGCCGAGGCGGATGCGGCGAACGATGCGGACTGGCGGC
TCGTCGATGCGGCCATGCGCGAAAACCGCGCCGCGATCGCCGATGCCTGGAGCGAATGGCAGGCGCAGACCGGGGGCATC
GCCCGGCTTGGCGAAGCGGTCGAATCCGCGCGCAAGGCCTATGACGGCGCGCTGCTCCAGGAACGTGCCGGTCTGCGGAC
CACGCTGGACGTGCTCGATCTTGCACGGGAACTGCTTTCGGCCCGCAACGGCTACAACAATGCCATTGCCGGGGCGACAA
TCGCCAAGGCGCGCCTGCTCTTCGCGATGGGCTCGCTCGACTATGCGTGGCTGATGCCCGACGAGGCGCGATACGATGCG
GACGGGCACCTGCAGGACGTGCGTCACAAGGGTGACGTGCCGCTGCTCACCCCGCTGTTCCGCGCGCTCGACAGCGTCGT
CGCCGGCGGCGGCAAGCCGCGCCCGCTGCGCGATCCTTCCGCCAAGGCGACCACGTCGGGCTTCACCCTGACCGAGCAGC
CCGCGCCGGGCCAGTAG

Upstream 100 bases:

>100_bases
CCGCCGAAGTCTATATCGAGACCGGCAGTCGGTCGCTCCTTTCCTATTTCACCAAGCCGCTGCGCGACCAGTTCTCGCGC
GCGTTCCGGGACAATTGAGC

Downstream 100 bases:

>100_bases
CGCGCCGCTGCCCTGCGGAAGCTGCGCTCGGACCGATCCCCGAGCTGCCGTCAGCGGGCATTGGGTACTTGGCACTGTGC
CCGTTTCCGGCAATGAGCGG

Product: Type I secretion outer membrane protein, TolC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 538; Mature: 538

Protein sequence:

>538_residues
MRPKANGGVAWLALLLAETATGTVVSTVAPTVARAQEIASTFVEAPELPPETPSDIADQLREPTPVAALPDALRRAYWSN
PSLQAQRASVRGADWRIPQARAAYGPKLSASGTYGWQRDNFETPAGVYTAFNGWTSTAQAILTQPLFTFGRNVAAEQFAS
AQVEYQRNVLRSTEQQTMLDAIGAYVGVLRDRAAVGIARDNLALLEQELSDNQARFNAREVTSTDVQQVETRVDLGRAQL
LAAQRAAAGSEATFLRTTGAPAAENAAAPNPLSLPVRTIEEAYLFAELHNPVLFAAQAREKVSRAQAASARADLMPRVDL
RGSADYGTLSPYSNALRQNTLRGEVVLSAPLFESGVRRARLAEADAANDADWRLVDAAMRENRAAIADAWSEWQAQTGGI
ARLGEAVESARKAYDGALLQERAGLRTTLDVLDLARELLSARNGYNNAIAGATIAKARLLFAMGSLDYAWLMPDEARYDA
DGHLQDVRHKGDVPLLTPLFRALDSVVAGGGKPRPLRDPSAKATTSGFTLTEQPAPGQ

Sequences:

>Translated_538_residues
MRPKANGGVAWLALLLAETATGTVVSTVAPTVARAQEIASTFVEAPELPPETPSDIADQLREPTPVAALPDALRRAYWSN
PSLQAQRASVRGADWRIPQARAAYGPKLSASGTYGWQRDNFETPAGVYTAFNGWTSTAQAILTQPLFTFGRNVAAEQFAS
AQVEYQRNVLRSTEQQTMLDAIGAYVGVLRDRAAVGIARDNLALLEQELSDNQARFNAREVTSTDVQQVETRVDLGRAQL
LAAQRAAAGSEATFLRTTGAPAAENAAAPNPLSLPVRTIEEAYLFAELHNPVLFAAQAREKVSRAQAASARADLMPRVDL
RGSADYGTLSPYSNALRQNTLRGEVVLSAPLFESGVRRARLAEADAANDADWRLVDAAMRENRAAIADAWSEWQAQTGGI
ARLGEAVESARKAYDGALLQERAGLRTTLDVLDLARELLSARNGYNNAIAGATIAKARLLFAMGSLDYAWLMPDEARYDA
DGHLQDVRHKGDVPLLTPLFRALDSVVAGGGKPRPLRDPSAKATTSGFTLTEQPAPGQ
>Mature_538_residues
MRPKANGGVAWLALLLAETATGTVVSTVAPTVARAQEIASTFVEAPELPPETPSDIADQLREPTPVAALPDALRRAYWSN
PSLQAQRASVRGADWRIPQARAAYGPKLSASGTYGWQRDNFETPAGVYTAFNGWTSTAQAILTQPLFTFGRNVAAEQFAS
AQVEYQRNVLRSTEQQTMLDAIGAYVGVLRDRAAVGIARDNLALLEQELSDNQARFNAREVTSTDVQQVETRVDLGRAQL
LAAQRAAAGSEATFLRTTGAPAAENAAAPNPLSLPVRTIEEAYLFAELHNPVLFAAQAREKVSRAQAASARADLMPRVDL
RGSADYGTLSPYSNALRQNTLRGEVVLSAPLFESGVRRARLAEADAANDADWRLVDAAMRENRAAIADAWSEWQAQTGGI
ARLGEAVESARKAYDGALLQERAGLRTTLDVLDLARELLSARNGYNNAIAGATIAKARLLFAMGSLDYAWLMPDEARYDA
DGHLQDVRHKGDVPLLTPLFRALDSVVAGGGKPRPLRDPSAKATTSGFTLTEQPAPGQ

Specific function: Involved in the efflux of toxic and relatively hydrophobic compounds. Influences survival inside the host [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

None

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010130 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 57785; Mature: 57785

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPKANGGVAWLALLLAETATGTVVSTVAPTVARAQEIASTFVEAPELPPETPSDIADQL
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
REPTPVAALPDALRRAYWSNPSLQAQRASVRGADWRIPQARAAYGPKLSASGTYGWQRDN
CCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
FETPAGVYTAFNGWTSTAQAILTQPLFTFGRNVAAEQFASAQVEYQRNVLRSTEQQTMLD
CCCCCCHHEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIGAYVGVLRDRAAVGIARDNLALLEQELSDNQARFNAREVTSTDVQQVETRVDLGRAQL
HHHHHHHHHHHHHHHEECHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LAAQRAAAGSEATFLRTTGAPAAENAAAPNPLSLPVRTIEEAYLFAELHNPVLFAAQARE
HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEHHHHHH
KVSRAQAASARADLMPRVDLRGSADYGTLSPYSNALRQNTLRGEVVLSAPLFESGVRRAR
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHHH
LAEADAANDADWRLVDAAMRENRAAIADAWSEWQAQTGGIARLGEAVESARKAYDGALLQ
HHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ERAGLRTTLDVLDLARELLSARNGYNNAIAGATIAKARLLFAMGSLDYAWLMPDEARYDA
HHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
DGHLQDVRHKGDVPLLTPLFRALDSVVAGGGKPRPLRDPSAKATTSGFTLTEQPAPGQ
CCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
>Mature Secondary Structure
MRPKANGGVAWLALLLAETATGTVVSTVAPTVARAQEIASTFVEAPELPPETPSDIADQL
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
REPTPVAALPDALRRAYWSNPSLQAQRASVRGADWRIPQARAAYGPKLSASGTYGWQRDN
CCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
FETPAGVYTAFNGWTSTAQAILTQPLFTFGRNVAAEQFASAQVEYQRNVLRSTEQQTMLD
CCCCCCHHEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIGAYVGVLRDRAAVGIARDNLALLEQELSDNQARFNAREVTSTDVQQVETRVDLGRAQL
HHHHHHHHHHHHHHHEECHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LAAQRAAAGSEATFLRTTGAPAAENAAAPNPLSLPVRTIEEAYLFAELHNPVLFAAQARE
HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEHHHHHH
KVSRAQAASARADLMPRVDLRGSADYGTLSPYSNALRQNTLRGEVVLSAPLFESGVRRAR
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHHH
LAEADAANDADWRLVDAAMRENRAAIADAWSEWQAQTGGIARLGEAVESARKAYDGALLQ
HHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ERAGLRTTLDVLDLARELLSARNGYNNAIAGATIAKARLLFAMGSLDYAWLMPDEARYDA
HHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
DGHLQDVRHKGDVPLLTPLFRALDSVVAGGGKPRPLRDPSAKATTSGFTLTEQPAPGQ
CCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12271122 [H]