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The map label for this gene is sufC [H]

Identifier: 87198223

GI number: 87198223

Start: 203940

End: 204683

Strand: Direct

Name: sufC [H]

Synonym: Saro_0197

Alternate gene names: 87198223

Gene position: 203940-204683 (Clockwise)

Preceding gene: 87198222

Following gene: 87198224

Centisome position: 5.73

GC content: 64.38

Gene sequence:

>744_bases
ATGCTCACAATCGAAAACCTTCAGGCCAACGTTGCCGACAAGCCCATCCTCAAGGGCCTTTCGCTCACCATCAATGCCGG
CGAAATTCATGCGATCATGGGGCCCAACGGCGCGGGCAAGTCGACCCTCGGCTACACGCTTGGCGGGCGTCCCGGGTATG
AAGTGACCGGCGGCAGCGCCACTCTCGATGGCGCCGACATGCTGGGGATGGAGCCCCACGAACGCGCCGCCGCAGGCCTG
TTCCTCGGCTTCCAGTACCCGGTCGAAATTCCGGGCGTTTCCTTCGTCCAGTTCCTGCGCGAGGCGGCCAACGCCCAGCG
CAAGGCGCGCGGAGAGGCCCCGCTTTCGGGCGGCGAATTCCTCAAGCTCGCCAAGGAAAAGGCCGCGCTGCTGCGCATGG
ACATGGACATGCTCAAGCGCCCGGTGAACGTCGGCTTTTCCGGCGGCGAGAAGAAGCGTGCCGAGATGGTGCAGATGGGC
ATCCTCGATCCCCGGATCGCCATCCTCGACGAGACGGATTCCGGGCTCGACATCGACGCCCTGCGCATCTGCGGCGAAGG
CATCAACGCGATCATGCGCAAGCCCGACAAGGCCGTGCTGCTCATCACCCACTACCAGCGCCTGCTGGACTACGTGAAGC
CCGACTTCGTTCACGTTCTTGCCAGTGGCCGCATCGTGAAGAGCGGCGGTCCGGAACTGGCGCTCGAACTTGAAGAACAC
GGCTACGAGGCGGTCGCCGCATGA

Upstream 100 bases:

>100_bases
TGCGCGCCGCCGCGCGCCCGCAGCGCTCCACCTATTCGCGCTCCGGTGCACGCCCCCAGCGCAGCCATTCCCCCCGGTCG
CGGGGCTGAAAGAGAAGACG

Downstream 100 bases:

>100_bases
CCGCACTCGCCCTCCCCACGCGCAAGGACGAGGCCTATCGCTACGCCGATCTCGCCGCGCTGGAAAAGCTCTGGCCGCTG
CCGGCGCAGGAAATCCGCGT

Product: FeS assembly ATPase SufC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MLTIENLQANVADKPILKGLSLTINAGEIHAIMGPNGAGKSTLGYTLGGRPGYEVTGGSATLDGADMLGMEPHERAAAGL
FLGFQYPVEIPGVSFVQFLREAANAQRKARGEAPLSGGEFLKLAKEKAALLRMDMDMLKRPVNVGFSGGEKKRAEMVQMG
ILDPRIAILDETDSGLDIDALRICGEGINAIMRKPDKAVLLITHYQRLLDYVKPDFVHVLASGRIVKSGGPELALELEEH
GYEAVAA

Sequences:

>Translated_247_residues
MLTIENLQANVADKPILKGLSLTINAGEIHAIMGPNGAGKSTLGYTLGGRPGYEVTGGSATLDGADMLGMEPHERAAAGL
FLGFQYPVEIPGVSFVQFLREAANAQRKARGEAPLSGGEFLKLAKEKAALLRMDMDMLKRPVNVGFSGGEKKRAEMVQMG
ILDPRIAILDETDSGLDIDALRICGEGINAIMRKPDKAVLLITHYQRLLDYVKPDFVHVLASGRIVKSGGPELALELEEH
GYEAVAA
>Mature_247_residues
MLTIENLQANVADKPILKGLSLTINAGEIHAIMGPNGAGKSTLGYTLGGRPGYEVTGGSATLDGADMLGMEPHERAAAGL
FLGFQYPVEIPGVSFVQFLREAANAQRKARGEAPLSGGEFLKLAKEKAALLRMDMDMLKRPVNVGFSGGEKKRAEMVQMG
ILDPRIAILDETDSGLDIDALRICGEGINAIMRKPDKAVLLITHYQRLLDYVKPDFVHVLASGRIVKSGGPELALELEEH
GYEAVAA

Specific function: Has low ATPase activity. The SufBCD complex acts synergistically with SufE to stimulate the cysteine desulfurase activity of SufS. The SufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May f

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787972, Length=242, Percent_Identity=56.6115702479339, Blast_Score=288, Evalue=3e-79,
Organism=Escherichia coli, GI87081709, Length=234, Percent_Identity=24.3589743589744, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789864, Length=231, Percent_Identity=25.1082251082251, Blast_Score=60, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17541710, Length=239, Percent_Identity=26.3598326359833, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26410; Mature: 26410

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTIENLQANVADKPILKGLSLTINAGEIHAIMGPNGAGKSTLGYTLGGRPGYEVTGGSA
CEEECCCCCCCCCCHHHCCEEEEEECCEEEEEECCCCCCCCCCCEEECCCCCCEECCCCE
TLDGADMLGMEPHERAAAGLFLGFQYPVEIPGVSFVQFLREAANAQRKARGEAPLSGGEF
EECCCHHCCCCCHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH
LKLAKEKAALLRMDMDMLKRPVNVGFSGGEKKRAEMVQMGILDPRIAILDETDSGLDIDA
HHHHHHHHHHHHHCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
LRICGEGINAIMRKPDKAVLLITHYQRLLDYVKPDFVHVLASGRIVKSGGPELALELEEH
HHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCHHHEEHHHCCEEEECCCCEEEEEEHHC
GYEAVAA
CCEECCC
>Mature Secondary Structure
MLTIENLQANVADKPILKGLSLTINAGEIHAIMGPNGAGKSTLGYTLGGRPGYEVTGGSA
CEEECCCCCCCCCCHHHCCEEEEEECCEEEEEECCCCCCCCCCCEEECCCCCCEECCCCE
TLDGADMLGMEPHERAAAGLFLGFQYPVEIPGVSFVQFLREAANAQRKARGEAPLSGGEF
EECCCHHCCCCCHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH
LKLAKEKAALLRMDMDMLKRPVNVGFSGGEKKRAEMVQMGILDPRIAILDETDSGLDIDA
HHHHHHHHHHHHHCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
LRICGEGINAIMRKPDKAVLLITHYQRLLDYVKPDFVHVLASGRIVKSGGPELALELEEH
HHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCHHHEEHHHCCEEEECCCCEEEEEEHHC
GYEAVAA
CCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]