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The map label for this gene is sufD [H]

Identifier: 87198224

GI number: 87198224

Start: 204680

End: 205414

Strand: Direct

Name: sufD [H]

Synonym: Saro_0198

Alternate gene names: 87198224

Gene position: 204680-205414 (Clockwise)

Preceding gene: 87198223

Following gene: 87198225

Centisome position: 5.75

GC content: 68.57

Gene sequence:

>735_bases
ATGACCGCACTCGCCCTCCCCACGCGCAAGGACGAGGCCTATCGCTACGCCGATCTCGCCGCGCTGGAAAAGCTCTGGCC
GCTGCCGGCGCAGGAAATCCGCGTGGCGGCGGGCGAAGAAGGCGCGCTGGCCGTGGTGCTGGACGGCGGTAACGACGCGG
CGCGCGATATCTCCATCGTGCTCGAGGATGGTGCTTCGTTCGACCTGCGCCTGCTCAACGCCGGTTCCGCCTATGGCCGC
ATCGCCGTCGCGGTCCGTCTCGGCAAGGGCGCCAGGTTCCATCTCGGAGCCGCGCAGGTCGCGGGTGGCGAACAGGTGGC
GGAAATCGTCACCGAAGTAACCCACGCAGAGCCTGACGCCGTGTCCAGCCAGGTCGTGCGCTCGGTTCTCGGCGGAAAGG
CGACCGGCACCTATCTTGGCCGCGTCGTTGTTGCCCGGGGGGCGATCGGCACCGACGGCGAACAGTCGATCCGGGCGATG
CTGCTCGACCGCAGGGCAACCGCCAATGCGCGGCCCGAGCTCGAAATCTATGCCGACGACGTGAAGTGCGCGCACGGCTG
CGCGGTGGGCGAGCTTGACGCCACCGGCCTGTTCTACCTGCAATCGCGCGGTCTTCCGCCGGCAGAGGCCAAGAAGCTCA
TGCTCCAGGCCTTCATCGCCGAGGCCTTCGTCGGCGCGGCCGACGAGGAGGTCCTGACAGATGCCGCGCTCAAGGCGCTG
GAGGCTGTGCTGTGA

Upstream 100 bases:

>100_bases
CCGACTTCGTTCACGTTCTTGCCAGTGGCCGCATCGTGAAGAGCGGCGGTCCGGAACTGGCGCTCGAACTTGAAGAACAC
GGCTACGAGGCGGTCGCCGC

Downstream 100 bases:

>100_bases
GCGTGGACACGATCACGCGCGGCGCGCAATGGCCGGGCCTGCTGAATCCCGACGGCAGCCGCTGGCACTATCTCGACACC
GCAGCCACCGCGCAGAAGCC

Product: SufBD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MTALALPTRKDEAYRYADLAALEKLWPLPAQEIRVAAGEEGALAVVLDGGNDAARDISIVLEDGASFDLRLLNAGSAYGR
IAVAVRLGKGARFHLGAAQVAGGEQVAEIVTEVTHAEPDAVSSQVVRSVLGGKATGTYLGRVVVARGAIGTDGEQSIRAM
LLDRRATANARPELEIYADDVKCAHGCAVGELDATGLFYLQSRGLPPAEAKKLMLQAFIAEAFVGAADEEVLTDAALKAL
EAVL

Sequences:

>Translated_244_residues
MTALALPTRKDEAYRYADLAALEKLWPLPAQEIRVAAGEEGALAVVLDGGNDAARDISIVLEDGASFDLRLLNAGSAYGR
IAVAVRLGKGARFHLGAAQVAGGEQVAEIVTEVTHAEPDAVSSQVVRSVLGGKATGTYLGRVVVARGAIGTDGEQSIRAM
LLDRRATANARPELEIYADDVKCAHGCAVGELDATGLFYLQSRGLPPAEAKKLMLQAFIAEAFVGAADEEVLTDAALKAL
EAVL
>Mature_243_residues
TALALPTRKDEAYRYADLAALEKLWPLPAQEIRVAAGEEGALAVVLDGGNDAARDISIVLEDGASFDLRLLNAGSAYGRI
AVAVRLGKGARFHLGAAQVAGGEQVAEIVTEVTHAEPDAVSSQVVRSVLGGKATGTYLGRVVVARGAIGTDGEQSIRAML
LDRRATANARPELEIYADDVKCAHGCAVGELDATGLFYLQSRGLPPAEAKKLMLQAFIAEAFVGAADEEVLTDAALKALE
AVL

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=181, Percent_Identity=31.4917127071823, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 25452; Mature: 25321

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALALPTRKDEAYRYADLAALEKLWPLPAQEIRVAAGEEGALAVVLDGGNDAARDISIV
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCEEEEEECCCCCCCEEEEE
LEDGASFDLRLLNAGSAYGRIAVAVRLGKGARFHLGAAQVAGGEQVAEIVTEVTHAEPDA
EECCCCEEEEEEECCCCCCEEEEEEEECCCCEEECCHHHHCCHHHHHHHHHHHHCCCCHH
VSSQVVRSVLGGKATGTYLGRVVVARGAIGTDGEQSIRAMLLDRRATANARPELEIYADD
HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECC
VKCAHGCAVGELDATGLFYLQSRGLPPAEAKKLMLQAFIAEAFVGAADEEVLTDAALKAL
CCHHCCCEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
EAVL
HHCC
>Mature Secondary Structure 
TALALPTRKDEAYRYADLAALEKLWPLPAQEIRVAAGEEGALAVVLDGGNDAARDISIV
CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCEEEEEECCCCCCCEEEEE
LEDGASFDLRLLNAGSAYGRIAVAVRLGKGARFHLGAAQVAGGEQVAEIVTEVTHAEPDA
EECCCCEEEEEEECCCCCCEEEEEEEECCCCEEECCHHHHCCHHHHHHHHHHHHCCCCHH
VSSQVVRSVLGGKATGTYLGRVVVARGAIGTDGEQSIRAMLLDRRATANARPELEIYADD
HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECC
VKCAHGCAVGELDATGLFYLQSRGLPPAEAKKLMLQAFIAEAFVGAADEEVLTDAALKAL
CCHHCCCEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
EAVL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]