| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is fyuA [H]
Identifier: 87198204
GI number: 87198204
Start: 181101
End: 183626
Strand: Direct
Name: fyuA [H]
Synonym: Saro_0178
Alternate gene names: 87198204
Gene position: 181101-183626 (Clockwise)
Preceding gene: 87198198
Following gene: 87198205
Centisome position: 5.08
GC content: 63.58
Gene sequence:
>2526_bases ATGCGTGCCAGCCGTCTTCTATTGAACTCATCGGCCCTTGGCCTTCTGCTGGCCGCCACGCCGGCTCTCGCCCAGGAGGT TCCGCAGGACAGCGCCGCGTCCGCAGACGGGGGCGAAACGATCATCGTCACCGCCCGTCGCCAGAACGAACGGCTTCAGG ACGTTCCGGCCTCTGTCTCCGTGCTGACCGCGACGGCACTGCAGAACACGGGCGCCACCAAGGCAGAGGATTTCACCCAG CTCACCCCCGGCGTCACCATCGTGACCGGCACGGCCGAAGCTGGTGACACGCAGATCAACATCCGCGGCATCAACGGCGC GCGCGATGCGGAAAGCTCGGTGGCCTTGGTGGTCGACGGGATTCTCAAGACCAATACCGCACAGCTCAACCAGCCCCAGG GGACGCTGACCCAGGTCGAAGTGCTGAAGGGGCCGCAGGGCGCGCTCTATGGCCGCAACGCGGCGGCCGGCGCCATCGTG CTGCAGACGCTGAAGCCCACGGACACGCTGTCGGGCGGACTGCGCGCCTCCTACGCCAACGAGGCGACCTACGAGGCGAC GGCGCATATCGCGGGGCCGCTGGGCGACAACATCGGCTTCGTGCTTTCGGGATACTATTTCACCACCGACGGCTGGTGGC GCAACACCTTGCTCAACAATTCCAAGACCGTCGACGACAAGGAGAACTGGGCGATCGACGGGCGCGTGATGGTCGGCCAG GGCACATCGACCCAGCTCGACCTCAAGGCGCGCTATGCAGAGTTCCACGGCGCTTCCCTGCCGTTCAACGCATCGTTCCA TCTGCCGCTGTTCGGCACGGTGAACCCCGCGTTCTACGAGGACGTGAACAAGCACGAGTTCAACTTCTACAACAACATCC GCGCGACCAACGACCAGAAGAGCTTCGACGTCTCGGCCAAGATCGATCACGAATTCGGCAACGGCATGAAGCTGGTTGCC TGGGCGCTCTATTCCGACGTCAAGCAGGACCTTGTCGCCGATGGCACCTCGGCGGATTTCGCGCGCTACATCTCGAATGC AGATTCGGCGGTGGACAGTTCGGTCGCGAGCTGCTTCGCCAGCACGGCGGCGCTGACCGGCTTCCCGGTCAACCAACCCG GCTTCATCGGACAGATCCCGGTTCCGTTCCTCTTCGCGCCGTCGACGGGCTCGACCTTCGGCCCATACAGCCCGACGACT TGCGACGGCATCCAGTACCAGCTTCGCAACCAGAAGGACTTCAGCACCGAAGTTCGCCTGCTGTCGGACACGGACGGGCC ACTCACCTGGCAGCTTGGCGCCTATTACCTGCACATCGACCGCAAGACCGGCGTCAGCCTCGGTGCCGATACGGGACAGG GCGTCATCAAGCAGCTCTACAACGCTCCGGACACCGCGAACCCGACATCGCTGCTGCTGGCCGACAAGTTCCGCACCAAC GTCTACGCCGCCTTCGGTGCAGCCGAGTGGAAGCCGTCCGAAGTCTTCACCGGCGGCATTGCGCTGCGCTATGACATCGA GGACCGCGTGGCCAACTCGCTGGTTCCGGACGTGACGGATCCCTTCACCGGGGGCCCGATCAACCCGGGTCTCGCGTTCG GGGCGTTCAAGCCGCAGAACGCGACGTTCAAGCAGCTCCAGCCCAAGGTCACGCTGAGCTTCCACCCAAGCCCCGCGCTC AACATTTACGCCAACTGGGGCATCGGCTTCAAATCGGGCGGCTTCAACAACCAGGGCTCTGCCGCGGTGGTGGACCAGAA CTTCAATCAGTTCATCAACGCCGGGGTGACGATCGACGACCAGTATCGCAAGGAGAAGTCGAGCGCGTTCGAGGCCGGCA TCAAGGGCGAACTGCTTGACGGACGGGTGACCTACGACCTTGCAGCCTATTACACCCGCGTCACGGACATGCAGTTCTTC GAGTTCTTCGTCGGCAGCTTCGGCCTCCTGCGTGTAGTCTCGAACATCGACCGCGTGGACATCAAGGGCGCCGAGCTGAA CCTGACCGGCAAGGTCGTGGACGGGTGGAAGGTCTTCGGATCGTTCAACGTCACCGACAGCGAGATCAAGAAGAACCGCT CGCGTCCCTACACGGTGGGCAACAAGTCCCCCTATACCGCTGACTGGACGATCAACCTTGGCACGGAAATCAACGCGCCG ATCAACGACAGCGTGAAGCTGCTGCTGCGCGCCGACTATCGCATCACCGGGCCAACGTGGTTCCATTCGGTCCAGGACCA GGAACGGCCGACGCTGTTCTCGGGTCTGCTGCCGATCTCCGAACTCAACTTCCTGCCGCCCTCGTTCGGCAATGCGCGGT ATGACGTGGCCCGGCGCGATGCCTTCGGCGTGCTGAACCTGCGTGCCGGGATCAACACCGACCGCTACCGGATCGCGGTG TTTGCCGATAACCTGCTCGATCGCAAGTACATCGCCGAGGCGATTCCCGCGATCGAGTTTGGCGGGTCGTTCATCTCGCC GGGCGCGCGCCGCCTGATCGGGGTGGAAGTCGGCGCTTCGTTCTGA
Upstream 100 bases:
>100_bases TCCACAAGAGCGCGCGTCAAGACTGAGGGAAGCGGCGCGCGCCGCACCAAAATGGACACGATCCACCGAACGTAATCGAA CCATTCAGGGAGGTTTGAGA
Downstream 100 bases:
>100_bases CAAGGCGGCAAGCCGGGCGGGCGGATCGACCGCCCCCCGGCAAGCTCAGGAGTTCATGTGTCCAAGGCCTCGCAGGAAGC CTATCGCAAGATTCGCGCCG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 841; Mature: 841
Protein sequence:
>841_residues MRASRLLLNSSALGLLLAATPALAQEVPQDSAASADGGETIIVTARRQNERLQDVPASVSVLTATALQNTGATKAEDFTQ LTPGVTIVTGTAEAGDTQINIRGINGARDAESSVALVVDGILKTNTAQLNQPQGTLTQVEVLKGPQGALYGRNAAAGAIV LQTLKPTDTLSGGLRASYANEATYEATAHIAGPLGDNIGFVLSGYYFTTDGWWRNTLLNNSKTVDDKENWAIDGRVMVGQ GTSTQLDLKARYAEFHGASLPFNASFHLPLFGTVNPAFYEDVNKHEFNFYNNIRATNDQKSFDVSAKIDHEFGNGMKLVA WALYSDVKQDLVADGTSADFARYISNADSAVDSSVASCFASTAALTGFPVNQPGFIGQIPVPFLFAPSTGSTFGPYSPTT CDGIQYQLRNQKDFSTEVRLLSDTDGPLTWQLGAYYLHIDRKTGVSLGADTGQGVIKQLYNAPDTANPTSLLLADKFRTN VYAAFGAAEWKPSEVFTGGIALRYDIEDRVANSLVPDVTDPFTGGPINPGLAFGAFKPQNATFKQLQPKVTLSFHPSPAL NIYANWGIGFKSGGFNNQGSAAVVDQNFNQFINAGVTIDDQYRKEKSSAFEAGIKGELLDGRVTYDLAAYYTRVTDMQFF EFFVGSFGLLRVVSNIDRVDIKGAELNLTGKVVDGWKVFGSFNVTDSEIKKNRSRPYTVGNKSPYTADWTINLGTEINAP INDSVKLLLRADYRITGPTWFHSVQDQERPTLFSGLLPISELNFLPPSFGNARYDVARRDAFGVLNLRAGINTDRYRIAV FADNLLDRKYIAEAIPAIEFGGSFISPGARRLIGVEVGASF
Sequences:
>Translated_841_residues MRASRLLLNSSALGLLLAATPALAQEVPQDSAASADGGETIIVTARRQNERLQDVPASVSVLTATALQNTGATKAEDFTQ LTPGVTIVTGTAEAGDTQINIRGINGARDAESSVALVVDGILKTNTAQLNQPQGTLTQVEVLKGPQGALYGRNAAAGAIV LQTLKPTDTLSGGLRASYANEATYEATAHIAGPLGDNIGFVLSGYYFTTDGWWRNTLLNNSKTVDDKENWAIDGRVMVGQ GTSTQLDLKARYAEFHGASLPFNASFHLPLFGTVNPAFYEDVNKHEFNFYNNIRATNDQKSFDVSAKIDHEFGNGMKLVA WALYSDVKQDLVADGTSADFARYISNADSAVDSSVASCFASTAALTGFPVNQPGFIGQIPVPFLFAPSTGSTFGPYSPTT CDGIQYQLRNQKDFSTEVRLLSDTDGPLTWQLGAYYLHIDRKTGVSLGADTGQGVIKQLYNAPDTANPTSLLLADKFRTN VYAAFGAAEWKPSEVFTGGIALRYDIEDRVANSLVPDVTDPFTGGPINPGLAFGAFKPQNATFKQLQPKVTLSFHPSPAL NIYANWGIGFKSGGFNNQGSAAVVDQNFNQFINAGVTIDDQYRKEKSSAFEAGIKGELLDGRVTYDLAAYYTRVTDMQFF EFFVGSFGLLRVVSNIDRVDIKGAELNLTGKVVDGWKVFGSFNVTDSEIKKNRSRPYTVGNKSPYTADWTINLGTEINAP INDSVKLLLRADYRITGPTWFHSVQDQERPTLFSGLLPISELNFLPPSFGNARYDVARRDAFGVLNLRAGINTDRYRIAV FADNLLDRKYIAEAIPAIEFGGSFISPGARRLIGVEVGASF >Mature_841_residues MRASRLLLNSSALGLLLAATPALAQEVPQDSAASADGGETIIVTARRQNERLQDVPASVSVLTATALQNTGATKAEDFTQ LTPGVTIVTGTAEAGDTQINIRGINGARDAESSVALVVDGILKTNTAQLNQPQGTLTQVEVLKGPQGALYGRNAAAGAIV LQTLKPTDTLSGGLRASYANEATYEATAHIAGPLGDNIGFVLSGYYFTTDGWWRNTLLNNSKTVDDKENWAIDGRVMVGQ GTSTQLDLKARYAEFHGASLPFNASFHLPLFGTVNPAFYEDVNKHEFNFYNNIRATNDQKSFDVSAKIDHEFGNGMKLVA WALYSDVKQDLVADGTSADFARYISNADSAVDSSVASCFASTAALTGFPVNQPGFIGQIPVPFLFAPSTGSTFGPYSPTT CDGIQYQLRNQKDFSTEVRLLSDTDGPLTWQLGAYYLHIDRKTGVSLGADTGQGVIKQLYNAPDTANPTSLLLADKFRTN VYAAFGAAEWKPSEVFTGGIALRYDIEDRVANSLVPDVTDPFTGGPINPGLAFGAFKPQNATFKQLQPKVTLSFHPSPAL NIYANWGIGFKSGGFNNQGSAAVVDQNFNQFINAGVTIDDQYRKEKSSAFEAGIKGELLDGRVTYDLAAYYTRVTDMQFF EFFVGSFGLLRVVSNIDRVDIKGAELNLTGKVVDGWKVFGSFNVTDSEIKKNRSRPYTVGNKSPYTADWTINLGTEINAP INDSVKLLLRADYRITGPTWFHSVQDQERPTLFSGLLPISELNFLPPSFGNARYDVARRDAFGVLNLRAGINTDRYRIAV FADNLLDRKYIAEAIPAIEFGGSFISPGARRLIGVEVGASF
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=204, Percent_Identity=28.4313725490196, Blast_Score=71, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 90844; Mature: 90844
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRASRLLLNSSALGLLLAATPALAQEVPQDSAASADGGETIIVTARRQNERLQDVPASVS CCCCEEEECCCCCEEEEECCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCCCE VLTATALQNTGATKAEDFTQLTPGVTIVTGTAEAGDTQINIRGINGARDAESSVALVVDG EEEEEHHHCCCCCCHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEEEEC ILKTNTAQLNQPQGTLTQVEVLKGPQGALYGRNAAAGAIVLQTLKPTDTLSGGLRASYAN HHCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCCCEEEEEECCCCHHHCCCCEECCCC EATYEATAHIAGPLGDNIGFVLSGYYFTTDGWWRNTLLNNSKTVDDKENWAIDGRVMVGQ CCCEEEEEEECCCCCCCCCEEEEEEEEECCCCEEHHHCCCCCCCCCCCCEEECCEEEEEC GTSTQLDLKARYAEFHGASLPFNASFHLPLFGTVNPAFYEDVNKHEFNFYNNIRATNDQK CCCCEEEEEEHHHHHCCCCCCCCCEECCEEEECCCHHHHHCCCCCCCEEECCCCCCCCCC SFDVSAKIDHEFGNGMKLVAWALYSDVKQDLVADGTSADFARYISNADSAVDSSVASCFA CEEEEEEECCCCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHH STAALTGFPVNQPGFIGQIPVPFLFAPSTGSTFGPYSPTTCDGIQYQLRNQKDFSTEVRL HHHHHCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEE LSDTDGPLTWQLGAYYLHIDRKTGVSLGADTGQGVIKQLYNAPDTANPTSLLLADKFRTN EECCCCCEEEEECEEEEEEECCCCCEECCCCCHHHHHHHHCCCCCCCCCEEEEEHHHCCC VYAAFGAAEWKPSEVFTGGIALRYDIEDRVANSLVPDVTDPFTGGPINPGLAFGAFKPQN EEEEECCCCCCCCCEEECCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCC ATFKQLQPKVTLSFHPSPALNIYANWGIGFKSGGFNNQGSAAVVDQNFNQFINAGVTIDD CHHHHCCCEEEEEECCCCCEEEEEECCCEECCCCCCCCCCEEEEECCHHHHHHCCCEECH QYRKEKSSAFEAGIKGELLDGRVTYDLAAYYTRVTDMQFFEFFVGSFGLLRVVSNIDRVD HHHHHHHHHHHCCCCCEEECCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEE IKGAELNLTGKVVDGWKVFGSFNVTDSEIKKNRSRPYTVGNKSPYTADWTINLGTEINAP ECCCEEEEEEEEEECEEEEEECCCCHHHHHHCCCCCEECCCCCCEEEEEEEEECCEECCC INDSVKLLLRADYRITGPTWFHSVQDQERPTLFSGLLPISELNFLPPSFGNARYDVARRD CCCCEEEEEEECEEECCCHHCCCCCCCCCCCHHHCCCCHHHCCCCCCCCCCCEEEEHHCC AFGVLNLRAGINTDRYRIAVFADNLLDRKYIAEAIPAIEFGGSFISPGARRLIGVEVGAS CCEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEEECCCC F C >Mature Secondary Structure MRASRLLLNSSALGLLLAATPALAQEVPQDSAASADGGETIIVTARRQNERLQDVPASVS CCCCEEEECCCCCEEEEECCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCCCE VLTATALQNTGATKAEDFTQLTPGVTIVTGTAEAGDTQINIRGINGARDAESSVALVVDG EEEEEHHHCCCCCCHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEEEEC ILKTNTAQLNQPQGTLTQVEVLKGPQGALYGRNAAAGAIVLQTLKPTDTLSGGLRASYAN HHCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCCCEEEEEECCCCHHHCCCCEECCCC EATYEATAHIAGPLGDNIGFVLSGYYFTTDGWWRNTLLNNSKTVDDKENWAIDGRVMVGQ CCCEEEEEEECCCCCCCCCEEEEEEEEECCCCEEHHHCCCCCCCCCCCCEEECCEEEEEC GTSTQLDLKARYAEFHGASLPFNASFHLPLFGTVNPAFYEDVNKHEFNFYNNIRATNDQK CCCCEEEEEEHHHHHCCCCCCCCCEECCEEEECCCHHHHHCCCCCCCEEECCCCCCCCCC SFDVSAKIDHEFGNGMKLVAWALYSDVKQDLVADGTSADFARYISNADSAVDSSVASCFA CEEEEEEECCCCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHH STAALTGFPVNQPGFIGQIPVPFLFAPSTGSTFGPYSPTTCDGIQYQLRNQKDFSTEVRL HHHHHCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEE LSDTDGPLTWQLGAYYLHIDRKTGVSLGADTGQGVIKQLYNAPDTANPTSLLLADKFRTN EECCCCCEEEEECEEEEEEECCCCCEECCCCCHHHHHHHHCCCCCCCCCEEEEEHHHCCC VYAAFGAAEWKPSEVFTGGIALRYDIEDRVANSLVPDVTDPFTGGPINPGLAFGAFKPQN EEEEECCCCCCCCCEEECCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCC ATFKQLQPKVTLSFHPSPALNIYANWGIGFKSGGFNNQGSAAVVDQNFNQFINAGVTIDD CHHHHCCCEEEEEECCCCCEEEEEECCCEECCCCCCCCCCEEEEECCHHHHHHCCCEECH QYRKEKSSAFEAGIKGELLDGRVTYDLAAYYTRVTDMQFFEFFVGSFGLLRVVSNIDRVD HHHHHHHHHHHCCCCCEEECCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEE IKGAELNLTGKVVDGWKVFGSFNVTDSEIKKNRSRPYTVGNKSPYTADWTINLGTEINAP ECCCEEEEEEEEEECEEEEEECCCCHHHHHHCCCCCEECCCCCCEEEEEEEEECCEECCC INDSVKLLLRADYRITGPTWFHSVQDQERPTLFSGLLPISELNFLPPSFGNARYDVARRD CCCCEEEEEEECEEECCCHHCCCCCCCCCCCHHHCCCCHHHCCCCCCCCCCCEEEEHHCC AFGVLNLRAGINTDRYRIAVFADNLLDRKYIAEAIPAIEFGGSFISPGARRLIGVEVGAS CCEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHCCHHHCCCCCCCCCCCEEEEEECCCC F C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA