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The map label for this gene is rpe [H]

Identifier: 87198130

GI number: 87198130

Start: 106888

End: 107547

Strand: Direct

Name: rpe [H]

Synonym: Saro_0104

Alternate gene names: 87198130

Gene position: 106888-107547 (Clockwise)

Preceding gene: 87198128

Following gene: 87198131

Centisome position: 3.0

GC content: 64.09

Gene sequence:

>660_bases
ATGACTCCGCTGATCTCACCTTCCATCCTCTCAGCCGATTTTGCCCGCCTGGGCGAGGAAGTGCGCGCAATCGACGCCGC
CGGGGCCGACTGGATCCATGTCGATGTCATGGACGGCCACTTCGTGCCCAACATCACCATCGGGCCGATGGTCGTAAAGG
CGCTGCGCCCGCACACGACCAAGCCTTTTGACGTGCATCTGATGATCTCCCCGGTCGACGGCTATCTCCAGGCCTTTGCC
GATGCCGGCGCGGACATCATCACCGTCCACCCCGAGGCGGGGCCGCACATCCACCGCACCGTCCAGGCGATCAAGGCGCT
GGGCAAGAAGGCCGGCGTCTCTCTGAACCCGGGCACGCCGGCAAAGATGCTCGACTACCTGATCGACGACGTCGACCTCG
TGCTGGTGATGAGCGTGAACCCCGGTTTCGGCGGACAGAGCTTCATTTCCAGCCAGCTTCGCAAGATCGAGGCGGTGCGC
AAGATGATCGACAAGTCGGGACGGGACATCCACCTCGAGGTCGATGGCGGCGTTGATACCAGAACGATCCGCTCCTGCGT
CGACGCAGGCGCCGACGTCCTGGTCGCCGGGACCGCGACCTTCAAGGGTGGGCCTTCGCAATATGCGGCCAACATCGCCG
CGCTGAAGGGTCTCGGCTGA

Upstream 100 bases:

>100_bases
CCGATTCGCGAAAGGTAAGCGCGAAGGACGGGGTGGCCGTTAGCAGGCGCCAGAGTGTGCACCTATGTCCCTGCCGCCCG
ATGCAGGAAGACGCCGCCCG

Downstream 100 bases:

>100_bases
GATGGAAAACAGCGGCTTCCCCGTCATCGGAAGCCGCCAGGCGGCCAAGGCGCCGCACGAGTCGGCGATTCCGCTGGCAG
GCTCGAGGGAGGAACCGCTG

Product: ribulose-5-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTPLISPSILSADFARLGEEVRAIDAAGADWIHVDVMDGHFVPNITIGPMVVKALRPHTTKPFDVHLMISPVDGYLQAFA
DAGADIITVHPEAGPHIHRTVQAIKALGKKAGVSLNPGTPAKMLDYLIDDVDLVLVMSVNPGFGGQSFISSQLRKIEAVR
KMIDKSGRDIHLEVDGGVDTRTIRSCVDAGADVLVAGTATFKGGPSQYAANIAALKGLG

Sequences:

>Translated_219_residues
MTPLISPSILSADFARLGEEVRAIDAAGADWIHVDVMDGHFVPNITIGPMVVKALRPHTTKPFDVHLMISPVDGYLQAFA
DAGADIITVHPEAGPHIHRTVQAIKALGKKAGVSLNPGTPAKMLDYLIDDVDLVLVMSVNPGFGGQSFISSQLRKIEAVR
KMIDKSGRDIHLEVDGGVDTRTIRSCVDAGADVLVAGTATFKGGPSQYAANIAALKGLG
>Mature_218_residues
TPLISPSILSADFARLGEEVRAIDAAGADWIHVDVMDGHFVPNITIGPMVVKALRPHTTKPFDVHLMISPVDGYLQAFAD
AGADIITVHPEAGPHIHRTVQAIKALGKKAGVSLNPGTPAKMLDYLIDDVDLVLVMSVNPGFGGQSFISSQLRKIEAVRK
MIDKSGRDIHLEVDGGVDTRTIRSCVDAGADVLVAGTATFKGGPSQYAANIAALKGLG

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=210, Percent_Identity=38.5714285714286, Blast_Score=153, Evalue=1e-37,
Organism=Homo sapiens, GI219879828, Length=210, Percent_Identity=36.6666666666667, Blast_Score=144, Evalue=8e-35,
Organism=Homo sapiens, GI24307923, Length=156, Percent_Identity=30.1282051282051, Blast_Score=84, Evalue=9e-17,
Organism=Escherichia coli, GI1789788, Length=199, Percent_Identity=60.3015075376884, Blast_Score=236, Evalue=1e-63,
Organism=Escherichia coli, GI1790523, Length=209, Percent_Identity=39.2344497607655, Blast_Score=163, Evalue=9e-42,
Organism=Escherichia coli, GI1790754, Length=215, Percent_Identity=31.6279069767442, Blast_Score=101, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17552948, Length=214, Percent_Identity=39.2523364485981, Blast_Score=154, Evalue=4e-38,
Organism=Saccharomyces cerevisiae, GI6322341, Length=212, Percent_Identity=41.9811320754717, Blast_Score=166, Evalue=2e-42,
Organism=Drosophila melanogaster, GI24586301, Length=196, Percent_Identity=40.3061224489796, Blast_Score=154, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23082; Mature: 22951

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLISPSILSADFARLGEEVRAIDAAGADWIHVDVMDGHFVPNITIGPMVVKALRPHTT
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEHHHHHHHHCCCCC
KPFDVHLMISPVDGYLQAFADAGADIITVHPEAGPHIHRTVQAIKALGKKAGVSLNPGTP
CCEEEEEEEECHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCH
AKMLDYLIDDVDLVLVMSVNPGFGGQSFISSQLRKIEAVRKMIDKSGRDIHLEVDGGVDT
HHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH
RTIRSCVDAGADVLVAGTATFKGGPSQYAANIAALKGLG
HHHHHHHHCCCCEEEEECEECCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
TPLISPSILSADFARLGEEVRAIDAAGADWIHVDVMDGHFVPNITIGPMVVKALRPHTT
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEHHHHHHHHCCCCC
KPFDVHLMISPVDGYLQAFADAGADIITVHPEAGPHIHRTVQAIKALGKKAGVSLNPGTP
CCEEEEEEEECHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCH
AKMLDYLIDDVDLVLVMSVNPGFGGQSFISSQLRKIEAVRKMIDKSGRDIHLEVDGGVDT
HHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH
RTIRSCVDAGADVLVAGTATFKGGPSQYAANIAALKGLG
HHHHHHHHCCCCEEEEECEECCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]