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The map label for this gene is yebA [H]

Identifier: 87198087

GI number: 87198087

Start: 62365

End: 63528

Strand: Direct

Name: yebA [H]

Synonym: Saro_0061

Alternate gene names: 87198087

Gene position: 62365-63528 (Clockwise)

Preceding gene: 87198077

Following gene: 87198088

Centisome position: 1.75

GC content: 67.61

Gene sequence:

>1164_bases
ATGAAACTTGCCCCGCTGCGGCTGAGGGAAGCCGTTGCCCGCGTGCGCGGCTGGTTCCCGGATCGCGAATTCTTCATGCG
CGCCGAGGGCCAGGTGCGCTTCATCCGCATTTCCTCGCGCCTGCAGATGACCATCGCCGGGGCCATTGCCGCCGCGCTGC
TGCTGTGGGTGCTGGTGATGGCGGCGACGCTCGTGTCGCAGTTCACCGCCGCTCGCGATCATGCCGCCCTGCTCGAACGC
GAAGCAGCCGTCGCATCCGCCGAGAACCGCGTGGCGAAGTATCGCGGCGGCCTCGAAGGCGTGGCCGACGATCTCAATCG
CCGCCAGGACTTCATCGAGAAGGCCATCGAGGGAACGATCGGCGAACTGCCCAAGGACCTGCCCCGTGGCACCGTTTCGG
ACAGCACCGGCGAGGCCGCGAAGACAGTGCGGAAAGTATCCGCCGTCCTCCCAGAAGCGCGCCGCCTGGCCGAAGTCGAG
GCGCGCCAGCTTGCCTTCATCGAGCGCCTGACCCGCTTCGCCGATGCCCGCTCCGTGGCTGCCGAAACCGCCATCCGCCG
CGTCGGACTCAACCCCGCGATGATCCGCTCGGCCTCGCGGGAGGGGACCGGTGGTCCGCTGATCCACCTGTTCACCGGCC
GCGACGAAACGCTCGATCCGCGTTTCGCCCGCCTCGGCGCAAGCCTTGAGCGCATGGCATCGCTGGAAAAGGGCCTCGCC
CGCATCCCGAACACGCTTCCGGCCAGCCTGGAATACATATCGAGCGGTTTCGGCTATCGCTCGGACCCGTTCACCGGCGG
CCCTGCGTTCCACGCCGGGCTCGACTTCCGTGGCCCGGTCGGCGCGCCGATCTATGCAGCGGCGGCAGGTACGGTGAGCT
TCGTCGGCGTCCGCCAGGGCTATGGCAACGTGGTGGAAGTAAGCCACGGCAACGGCCTGCTCACCCGCTACGCCCACATG
TCGCGTACACAGGCGCGGGTCGGGCAGAAGGTGGACGCAGGCGCCGAAATCGGCAAGATCGGCAACACGGGGCGCTCTAC
CGGCCCTCATCTTCACTTCGAGGTGCGGATCAACGACCGTCCGGTCAATCCGCGCCCGTTCCTTGAGGCAAACAGGCATG
TTCAGGAAATCCGCGCCGGAGCAGGCGCACAGCACCGGGAGTAA

Upstream 100 bases:

>100_bases
CGGACCCAATCGGATTCGCCTCGGCCAGGACCGGCGGGTAGTTCCCGCGCCGACGGGATCGAATAACCAGAACAGCCGGG
GGTCGCTTTCCTTGCCAGTA

Downstream 100 bases:

>100_bases
CAGCACGATGGCCGCCACGTTCTCCGTCCTGGGCGCCGATCTTGCCGTGAAGGGCGATCTTTCGGCCACGGCCGACCTCC
ACATCGACGGCAGCGTCGAA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MKLAPLRLREAVARVRGWFPDREFFMRAEGQVRFIRISSRLQMTIAGAIAAALLLWVLVMAATLVSQFTAARDHAALLER
EAAVASAENRVAKYRGGLEGVADDLNRRQDFIEKAIEGTIGELPKDLPRGTVSDSTGEAAKTVRKVSAVLPEARRLAEVE
ARQLAFIERLTRFADARSVAAETAIRRVGLNPAMIRSASREGTGGPLIHLFTGRDETLDPRFARLGASLERMASLEKGLA
RIPNTLPASLEYISSGFGYRSDPFTGGPAFHAGLDFRGPVGAPIYAAAAGTVSFVGVRQGYGNVVEVSHGNGLLTRYAHM
SRTQARVGQKVDAGAEIGKIGNTGRSTGPHLHFEVRINDRPVNPRPFLEANRHVQEIRAGAGAQHRE

Sequences:

>Translated_387_residues
MKLAPLRLREAVARVRGWFPDREFFMRAEGQVRFIRISSRLQMTIAGAIAAALLLWVLVMAATLVSQFTAARDHAALLER
EAAVASAENRVAKYRGGLEGVADDLNRRQDFIEKAIEGTIGELPKDLPRGTVSDSTGEAAKTVRKVSAVLPEARRLAEVE
ARQLAFIERLTRFADARSVAAETAIRRVGLNPAMIRSASREGTGGPLIHLFTGRDETLDPRFARLGASLERMASLEKGLA
RIPNTLPASLEYISSGFGYRSDPFTGGPAFHAGLDFRGPVGAPIYAAAAGTVSFVGVRQGYGNVVEVSHGNGLLTRYAHM
SRTQARVGQKVDAGAEIGKIGNTGRSTGPHLHFEVRINDRPVNPRPFLEANRHVQEIRAGAGAQHRE
>Mature_387_residues
MKLAPLRLREAVARVRGWFPDREFFMRAEGQVRFIRISSRLQMTIAGAIAAALLLWVLVMAATLVSQFTAARDHAALLER
EAAVASAENRVAKYRGGLEGVADDLNRRQDFIEKAIEGTIGELPKDLPRGTVSDSTGEAAKTVRKVSAVLPEARRLAEVE
ARQLAFIERLTRFADARSVAAETAIRRVGLNPAMIRSASREGTGGPLIHLFTGRDETLDPRFARLGASLERMASLEKGLA
RIPNTLPASLEYISSGFGYRSDPFTGGPAFHAGLDFRGPVGAPIYAAAAGTVSFVGVRQGYGNVVEVSHGNGLLTRYAHM
SRTQARVGQKVDAGAEIGKIGNTGRSTGPHLHFEVRINDRPVNPRPFLEANRHVQEIRAGAGAQHRE

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=131, Percent_Identity=43.5114503816794, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI87082174, Length=107, Percent_Identity=35.5140186915888, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87082297, Length=147, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=38.3838383838384, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 41945; Mature: 41945

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLAPLRLREAVARVRGWFPDREFFMRAEGQVRFIRISSRLQMTIAGAIAAALLLWVLVM
CCCCHHHHHHHHHHHHCCCCCHHHHEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
AATLVSQFTAARDHAALLEREAAVASAENRVAKYRGGLEGVADDLNRRQDFIEKAIEGTI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHH
GELPKDLPRGTVSDSTGEAAKTVRKVSAVLPEARRLAEVEARQLAFIERLTRFADARSVA
HHCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AETAIRRVGLNPAMIRSASREGTGGPLIHLFTGRDETLDPRFARLGASLERMASLEKGLA
HHHHHHHHCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RIPNTLPASLEYISSGFGYRSDPFTGGPAFHAGLDFRGPVGAPIYAAAAGTVSFVGVRQG
HCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCCHHHEEEECCC
YGNVVEVSHGNGLLTRYAHMSRTQARVGQKVDAGAEIGKIGNTGRSTGPHLHFEVRINDR
CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCEEEEEEEECCC
PVNPRPFLEANRHVQEIRAGAGAQHRE
CCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKLAPLRLREAVARVRGWFPDREFFMRAEGQVRFIRISSRLQMTIAGAIAAALLLWVLVM
CCCCHHHHHHHHHHHHCCCCCHHHHEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
AATLVSQFTAARDHAALLEREAAVASAENRVAKYRGGLEGVADDLNRRQDFIEKAIEGTI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHH
GELPKDLPRGTVSDSTGEAAKTVRKVSAVLPEARRLAEVEARQLAFIERLTRFADARSVA
HHCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AETAIRRVGLNPAMIRSASREGTGGPLIHLFTGRDETLDPRFARLGASLERMASLEKGLA
HHHHHHHHCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RIPNTLPASLEYISSGFGYRSDPFTGGPAFHAGLDFRGPVGAPIYAAAAGTVSFVGVRQG
HCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHCCHHHEEEECCC
YGNVVEVSHGNGLLTRYAHMSRTQARVGQKVDAGAEIGKIGNTGRSTGPHLHFEVRINDR
CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCEEEEEEEECCC
PVNPRPFLEANRHVQEIRAGAGAQHRE
CCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]